Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Forward (+)

17899858 .. 17901982

Gene Structure 2125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023087

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTGTTTAGATGCATCTTTGGAGGAAGAGGTATTGGTATGTGGAGATATACGTGGAAATCTTGTTTTGTTCCCTTTGTTGAAGAGTGTGTTGTTGGGCACATTGGTTGCATCTGATGTTAAAGTATCTCCATCAAGTTGTTTCAAAGGAGCTCATGGGATATCAAGCATCTCCAGTGTTGCTGTTGCTAGACTAAGTTCTAATCAGATTGAAATATGCTCGACTGGAGCAGATGGGTGTATATGCTATCTGGAATATGACAAAGATAGGAATGATTTGGAATTTATAGGGAAGAAACAAGTGAAGGAGTTAGGTCTTATGCAATCTGTGTCTACATGCAATAGCTCTATGAACGAGCTATCAAACTGTCATTATGCTGCTGGTTTTGCATCAGTGGATTTTATAATTTGGAATTTATTAACTGAGACCAAGGTTTTCCAAATCCCATGTGGTGGATGGCGGCGTCCTCATTCCTATTATCTTGGTGATGTACCAGAGATAAAGAACTGCTTTGCATATGTTAAGGATGATATCATTTACATTCATCGATGCTGGGTACTGAATGGTGAAAGGAAGGAACTCTCTAGGAATTTGCGTATGCAATTCCATGGGAGAGAGATGCATTCCATATGCTTTGTCTCAGAAGAATTGCAACCTGGAGTAACTGGGATGCAAAAGAACTCAAAAATGTTTTTGCGTTTGCTATTTTTTTCACATTTTGTGGTTGTTTATTTGATAATTATGATTTTGTGCTTGAATTTGGAAATTTGTTTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

260

Amino Acids

29.21

Weight (kDa)

6.17

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	404
AccB7I	CCANNNNNTGG	1 cut(s)	452
AccI	GTMKAC	1 cut(s)	332
AciI	CCGC	1 cut(s)	460
AcsI	RAATTY	5 cut(s)	281, 412, 589, 757, 765
AcyI	GRCGYC	1 cut(s)	463
AfaI	GTAC	2 cut(s)	492, 558
AfiI	CCNNNNNNNGG	1 cut(s)	452
AgsI	TTSAA	4 cut(s)	82, 145, 212, 757
AjnI	CCWGG	1 cut(s)	655
AluBI	AGCT	3 cut(s)	152, 345, 358
AluI	AGCT	3 cut(s)	152, 345, 358
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	2 cut(s)	419, 643
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	5 cut(s)	281, 412, 589, 757, 765
AsuHPI	GGTGA	2 cut(s)	497, 578
BaeGI	GKGCMC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	3 cut(s)	139, 227, 450
BciT130I	CCWGG	1 cut(s)	657
BcoDI	GTCTC	2 cut(s)	419, 643
BfaI	CTAG	2 cut(s)	189, 585
BisI	GCNGC	2 cut(s)	378, 461
BlsI	GCNGC	2 cut(s)	379, 462
Bme1390I	CCNGG	1 cut(s)	657
BmrFI	CCNGG	1 cut(s)	657
BmrI	ACTGGG	1 cut(s)	675
BmsI	GCATC	7 cut(s)	23, 119, 177, 398, 539, 609, 660
BmuI	ACTGGG	1 cut(s)	675
BpmI	CTGGAG	3 cut(s)	157, 246, 678
Bsa29I	ATCGAT	1 cut(s)	547
BsaAI	YACGTR	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	463
BsaI	GGTCTC	1 cut(s)	419
BsaJI	CCNNGG	2 cut(s)	429, 607
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse1I	ACTGG	3 cut(s)	174, 229, 670
BseBI	CCWGG	1 cut(s)	657
BseCI	ATCGAT	1 cut(s)	547
BseDI	CCNNGG	2 cut(s)	429, 607
BseGI	GGATG	3 cut(s)	461, 532, 675
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMII	CTCAG	2 cut(s)	414, 654
BseNI	ACTGG	3 cut(s)	174, 229, 670
BseSI	GKGCMC	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	364
BseYI	CCCAGC	1 cut(s)	552
BshVI	ATCGAT	1 cut(s)	547
BsiHKAI	GWGCWC	1 cut(s)	154
BslI	CCNNNNNNNGG	1 cut(s)	452
BsmAI	GTCTC	2 cut(s)	419, 643
BsmI	GAATGC	1 cut(s)	622
Bso31I	GGTCTC	1 cut(s)	419
Bsp1286I	GDGCHC	2 cut(s)	101, 154
Bsp19I	CCATGG	1 cut(s)	607
BspACI	CCGC	1 cut(s)	460
BspCNI	CTCAG	2 cut(s)	415, 653
BspDI	ATCGAT	1 cut(s)	547
BspTNI	GGTCTC	1 cut(s)	419
BsrI	ACTGG	3 cut(s)	174, 229, 670
BssECI	CCNNGG	2 cut(s)	429, 607
BssNI	GRCGYC	1 cut(s)	463
BssT1I	CCWWGG	2 cut(s)	429, 607
Bst2UI	CCWGG	1 cut(s)	657
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	2 cut(s)	21, 77
BstACI	GRCGYC	1 cut(s)	463
BstBAI	YACGTR	1 cut(s)	53
BstDEI	CTNAG	3 cut(s)	194, 423, 640
BstDSI	CCRYGG	1 cut(s)	607
BstF5I	GGATG	3 cut(s)	461, 532, 675
BstMAI	GTCTC	2 cut(s)	419, 643
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	1 cut(s)	657
BstNSI	RCATGY	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	655
BstSLI	GKGCMC	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	364
Bsu15I	ATCGAT	1 cut(s)	547
BsuTUI	ATCGAT	1 cut(s)	547
BtgI	CCRYGG	1 cut(s)	607
BtsCI	GGATG	3 cut(s)	461, 532, 675
BtsIMutI	CAGTG	2 cut(s)	181, 399
ClaI	ATCGAT	1 cut(s)	547
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	2 cut(s)	491, 557
CviAII	CATG	4 cut(s)	155, 336, 447, 608
CviJI	RGCY	3 cut(s)	152, 345, 358
CviKI_1	RGCY	3 cut(s)	152, 345, 358
CviQI	GTAC	2 cut(s)	491, 557
DdeI	CTNAG	3 cut(s)	194, 423, 640
Eam1104I	CTCTTC	2 cut(s)	21, 77
EarI	CTCTTC	2 cut(s)	21, 77
Ecl136II	GAGCTC	1 cut(s)	152
Eco130I	CCWWGG	2 cut(s)	429, 607
Eco24I	GRGCYC	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	419
Eco32I	GATATC	2 cut(s)	162, 532
Eco53kI	GAGCTC	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	655
EcoRV	GATATC	2 cut(s)	162, 532
EcoT14I	CCWWGG	2 cut(s)	429, 607
EcoT22I	ATGCAT	2 cut(s)	16, 624
EcoT38I	GRGCYC	1 cut(s)	154
ErhI	CCWWGG	2 cut(s)	429, 607
FaeI	CATG	4 cut(s)	158, 339, 450, 611
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FatI	CATG	4 cut(s)	154, 335, 446, 607
FauNDI	CATATG	2 cut(s)	517, 629
FblI	GTMKAC	1 cut(s)	332
Fnu4HI	GCNGC	2 cut(s)	378, 461
FokI	GGATG	3 cut(s)	468, 539, 682
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	2 cut(s)	378, 461
FspBI	CTAG	2 cut(s)	189, 585
GluI	GCNGC	2 cut(s)	378, 461
GsaI	CCCAGC	1 cut(s)	556
GsuI	CTGGAG	3 cut(s)	157, 246, 678
HgaI	GACGC	1 cut(s)	452
Hin1I	GRCGYC	1 cut(s)	463
Hin1II	CATG	4 cut(s)	158, 339, 450, 611
HphI	GGTGA	2 cut(s)	497, 578
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	3 cut(s)	115, 207, 643
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	1 cut(s)	333
HpyAV	CCTTC	2 cut(s)	298, 568
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4IV	ACGT	1 cut(s)	52
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	3 cut(s)	194, 423, 640
HpySE526I	ACGT	1 cut(s)	52
Hsp92I	GRCGYC	1 cut(s)	463
Hsp92II	CATG	4 cut(s)	158, 339, 450, 611
LmnI	GCTCC	2 cut(s)	149, 227
LpnPI	CCDG	9 cut(s)	187, 210, 236, 366, 507, 538, 642, 651, 669
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	7 cut(s)	23, 119, 177, 398, 539, 609, 660
MaeI	CTAG	2 cut(s)	189, 585
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	661
MboII	GAAGA	4 cut(s)	38, 94, 304, 656
MhlI	GDGCHC	2 cut(s)	101, 154
MluCI	AATT	9 cut(s)	281, 405, 412, 589, 602, 647, 738, 757, 765
MnlI	CCTC	3 cut(s)	16, 22, 477
Mph1103I	ATGCAT	2 cut(s)	16, 624
MseI	TTAA	3 cut(s)	120, 419, 522
MspR9I	CCNGG	1 cut(s)	657
Mva1269I	GAATGC	1 cut(s)	622
MvaI	CCWGG	1 cut(s)	657
MwoI	GCNNNNNNNGC	1 cut(s)	386
NcoI	CCATGG	1 cut(s)	607
NdeI	CATATG	2 cut(s)	517, 629
NlaIII	CATG	4 cut(s)	158, 339, 450, 611
NsiI	ATGCAT	2 cut(s)	16, 624
NspI	RCATGY	1 cut(s)	339
PctI	GAATGC	1 cut(s)	622
PflMI	CCANNNNNTGG	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	379, 462
Ppu21I	YACGTR	1 cut(s)	53
PsiI	TTATAA	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	655
PspFI	CCCAGC	1 cut(s)	552
PspGI	CCWGG	1 cut(s)	655
RsaI	GTAC	2 cut(s)	492, 558
RsaNI	GTAC	2 cut(s)	491, 557
SacI	GAGCTC	1 cut(s)	154
SaqAI	TTAA	3 cut(s)	120, 419, 522
SatI	GCNGC	2 cut(s)	378, 461
ScrFI	CCNGG	1 cut(s)	657
SduI	GDGCHC	2 cut(s)	101, 154
SetI	ASST	8 cut(s)	33, 55, 154, 316, 347, 360, 435, 658
SfaNI	GCATC	7 cut(s)	23, 119, 177, 398, 539, 609, 660
Sse9I	AATT	9 cut(s)	281, 405, 412, 589, 602, 647, 738, 757, 765
SsiI	CCGC	1 cut(s)	460
SspMI	CTAG	2 cut(s)	189, 585
SstI	GAGCTC	1 cut(s)	154
StyD4I	CCNGG	1 cut(s)	655
StyI	CCWWGG	2 cut(s)	429, 607
TaaI	ACNGT	1 cut(s)	368
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	2 cut(s)	221, 547
TasI	AATT	9 cut(s)	281, 405, 412, 589, 602, 647, 738, 757, 765
TauI	GCSGC	1 cut(s)	463
Tru1I	TTAA	3 cut(s)	120, 419, 522
Tru9I	TTAA	3 cut(s)	120, 419, 522
TscAI	CASTG	2 cut(s)	181, 399
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	2 cut(s)	365, 533
TspRI	CASTG	2 cut(s)	181, 399
Van91I	CCANNNNNTGG	1 cut(s)	452
XapI	RAATTY	5 cut(s)	281, 412, 589, 757, 765
XceI	RCATGY	1 cut(s)	339
XcmI	CCANNNNNNNNNTGG	2 cut(s)	446, 453
XmiI	GTMKAC	1 cut(s)	332
XspI	CTAG	2 cut(s)	189, 585
Zsp2I	ATGCAT	2 cut(s)	16, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.