Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003801.1

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Reverse (-)

91545 .. 101691

Gene Structure 10147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003801.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4047 bp

atggagaagaagaagagcggctcgtggcgtctgcaaagtggtcggtatctgggagaagtgtcagccctttgtttccttcacctaccttctcacctgtcaataataagggagcttccttatttagtggccgggtcgggttcgcaaatcttggtctatgatttggaactgggaacaatgatgaggtcgttcgatgttttccaaggcattcgggtccatgggatttgctgcggcgctactcataccgatggccctgagggaaccgttgctttcgaaatcgctgtgtttggggaaaggagagtcaaggtgtttagattggagattaatttggggcagcaagtcagtgttggtctgaggctgttgcacttgttgcccaactttgggaattgggtcctggatgtttccttcatcatgtgtattgctattgggtgtagtgacaactctgttcatctttgggatgtatctacttctactgtggttcttctagttcagcatcctgagcggactcttctgtattcaatgcggttatggggtgaaactattgaagctctgcgcattgcatccggtactatctataatgagttaattgtcacagctggtgaggattgtacttgtcgtgtgtggggcctggatggaaaacacctagagacaatcaaggagcacacaggaaggggcatatggcgatgtttgtatgatccgaaatcttcgcttctaattactgctggctttgactctgcaattaaagtgcatcagctgcacattccattctctgggggattaaagggacatgcagagacaaaacaaatcggtggaatagttacatacacaactcgtatccctactttatccgagaatattggacctatggacagcaaaagtgaatatgttcgttgcttgcgttttacatgtgaggacaccctttatgttgccacaaaccatggttatatgtaccatgctaagctattggataccgaagtagaatggacaaaacttgttcgcgtcagtgaggaggtgccaattgtttgcatggatttattgtcagaaccattcaaactttcttctggtgttaaggattggattgctgttggagatggtaaaggaaacatgacagttgttggggttatatatggcgcttgtacccctagagttggttttgcctttacttggtcagctggaatagaaagacaactccttggagcacattggtgccagtcactaggttacgggttcatcttcactgctgatcctagaggaacattgaagctgtggaggctgtgtgatcactctgcaacgagctgtgatgtgtctctttcagctgaattcacatcaagtttcggaagtagaataatgtgtttagatgcatctttggaggaagaggtattggtatgtggagatatacgtggaaatcttgttttgttccctttgttgaagagtgtgttgctgggcacattggtcgcttctgatgttcaaatatctccatcaagttgtttcagaggagctcatgggatatcaagcatctccagtgttgctgttgctagactaagtagtaatcagattgaaatatgctcgactggagcagatgggtgtatatgctatctggaatatgacaaagataggaaggatttggaatttatagggatgaaacaagtgaaggagttgagtcttattcaatctgtctctgcgtgcaataactttgtgaatgagccatcaaactgtcattatgctgctggttttgcatcagtggattttataatttggaatttattaactgagaccaaggtcttccaaatcccatgtggtggatggcggcgtcctcattcctattatcttggtgatgtaccagagataaagaactgctttgcatatgttaaggatgatatcatttatattcatcgacgctgggtactgaatggtgaagggaaggaactctctaggaatttgcatatgcaattccatgggagagagatgcattccatatgctttgtctcagaagaattgcaacctggagtaactgggaaggaccatctgctctatagatctagttggattgcaactggctgtgaagacggaactgtgaggttgactaggtatatgccagatgttgataattggtctggatcaaaattgcttggggagcatgttggtggatcagctgtgagatcaatatgctgtgtgtcaaagataaacatacttccgtcagatatgactggcattcccaatataagaactgctaacaatggaacaacagagaatagagagactccaactttattgatttctgttggtgcaaagcgggtcttgacttcttggctactaagaagtaggaaagtagacaagaaggaagaaatggtacatgatccgcagcatgacagcactggaaagtcaccttcaatgtcattccagtggctttctacagatatgccagcaaaatattctagtattcaaaaagttccaacaaacatcaagaaaagagctgatcaagctggcgatgctgatggtaaagatgatgcagcatcagaaaagggaaacaaagactcgaactcctgcattaaagataaatatgaagatgactggagatacatggctgttactgcttttcttgtaaagtgtgccaattccaggataactgtctgttttattggtgtcgcttgttctgatgccacccttgcattacgggctctagttttgccctataggctatggtttgatgttgcttttctgtgtcctctatcatcaccagttctgtccctacagcatgtcatccttcctgcatgtctaccttctgaaggcaattggcagattggaagtttgtatattctcatcagtggggctactgatggaagtattgccttttgggacctcactagaagcattgaagcttttatgcagctggtatcagtgcttgatacagaaaagttcattgactgtcagaaacggccgagaacagggaggggaagtcagggtggaagacggtggagatctttagacagtagcgtgtcaaagaataggctaggtgccagttctactactgtcaaagctgtagtcgaaactgatgagaatttgccacagcattctggggatggaacttcatcaatgctaaatgataatgggagcagtagaacggcttcttcacatgctattcatactgcttccctagattcagaagcaggtgcttatgattcctcatcggacatatgtgaaatatcaccattacttgtcttcaaggccattcacaaatctggtgtcaattctctccacatttcaaatgtagagggttgtctaagtcctgaaatcggttttctctataatttaattagtgggggtgatgatcaagcccttagctgtcttacatttgaattgtcattgtcaacatttagctctgaatttgataatatgacactggaaatcaaaaattcaatcactgaacttggaaatgcaaagaagttagttcattctaaccaagacaagaagaagaactattggatccgattcttaaatcatgatacagtcccctcagctcacagctctgccgtaaaaggtgtttggacagacggatcttgggttttttcaactggtctggatcagcgtgtcaggtgctggcgtcttcaggaggaaggtaaattaatcgagtatgcttatttggtcatcagtgtgccagagccagaagcactggatgctaaactgtgtggcaggaacaaatatcagattgctgtagctgggaggggaatgcagatgctggagttctctgaaattctggcatcagaattgtcaaccattgatgatctacttgcaactaatgtggaacttgaaccagaaaagattgaagatgggaaaaatggaggtcctttattccattctgatctttacaacagggaattagtccacaacatagctcaaggtttcattcctggattagctgctgcttgtgttgataagacatctggagatatcttcaagacccctgcttctgtggcggccgatgtgagaaaggaaatggtggagttgtcactcaaagaaatgagaattttgttgcagaatctgttatcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

1348

Amino Acids

148.66

Weight (kDa)

5.98

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1748
AarI	CACCTGC	1 cut(s)	3155
Acc16I	TGCGCA	1 cut(s)	551
Acc36I	ACCTGC	1 cut(s)	3155
AccB1I	GGYRCC	3 cut(s)	1009, 1203, 3011
AccB7I	CCANNNNNTGG	2 cut(s)	767, 1796
AccBSI	CCGCTC	2 cut(s)	18, 499
AccI	GTMKAC	2 cut(s)	2328, 2773
AccII	CGCG	1 cut(s)	996
AciI	CCGC	8 cut(s)	18, 228, 499, 520, 1804, 2290, 2357, 3971
AclWI	GGATC	9 cut(s)	686, 1235, 2122, 2152, 2348, 3475, 3488, 3559, 3585
AcoI	YGGCCR	3 cut(s)	126, 2933, 3972
AcsI	RAATTY	9 cut(s)	1316, 1625, 1756, 1933, 3055, 3380, 3409, 3747, 4020
AcuI	CTGAAG	2 cut(s)	2802, 3587
AcyI	GRCGYC	3 cut(s)	28, 1807, 3598
AfaI	GTAC	7 cut(s)	565, 607, 947, 1135, 1836, 1902, 2349
AflIII	ACRYGT	1 cut(s)	902
AjnI	CCWGG	5 cut(s)	390, 624, 1999, 2615, 3904
AleI	CACNNNNGTG	1 cut(s)	1201
Alw21I	GWGCWC	3 cut(s)	660, 1198, 1498
Alw26I	GTCTC	7 cut(s)	638, 785, 1308, 1678, 1763, 1987, 2249
AlwI	GGATC	9 cut(s)	686, 1235, 2122, 2152, 2348, 3475, 3488, 3559, 3585
AlwNI	CAGNNNCTG	3 cut(s)	3594, 3733, 4036
AoxI	GGCC	6 cut(s)	126, 247, 622, 2933, 3222, 3972
ApeKI	GCWGC	9 cut(s)	225, 331, 751, 1721, 2359, 2507, 2884, 3914, 3917
ApoI	RAATTY	9 cut(s)	1316, 1625, 1756, 1933, 3055, 3380, 3409, 3747, 4020
ArsI	GACNNNNNNTTYG	4 cut(s)	3024, 3056, 3225, 3257
AseI	ATTAAT	2 cut(s)	321, 3620
Asp700I	GAANNNNTTC	2 cut(s)	882, 3121
AspLEI	GCGC	3 cut(s)	233, 552, 1130
AspS9I	GGNCC	8 cut(s)	211, 248, 388, 622, 857, 2017, 2854, 3839
AsuC2I	CCSGG	1 cut(s)	130
AsuII	TTCGAA	1 cut(s)	270
AvaII	GGWCC	6 cut(s)	211, 388, 857, 2017, 2854, 3839
AxyI	CCTNAGG	1 cut(s)	252
BaeGI	GKGCMC	1 cut(s)	1445
BaeI	ACNNNNGTAYC	2 cut(s)	957, 990
BamHI	GGATCC	1 cut(s)	3480
BanI	GGYRCC	3 cut(s)	1009, 1203, 3011
BanII	GRGCYC	2 cut(s)	1498, 2677
BarI	GAAGNNNNNNTAC	4 cut(s)	2331, 2363, 3106, 3138
BauI	CACGAG	1 cut(s)	22
BbsI	GAAGAC	5 cut(s)	1771, 2067, 2971, 3208, 3593
Bbv12I	GWGCWC	3 cut(s)	660, 1198, 1498
BbvCI	CCTCAGC	1 cut(s)	3511
BbvI	GCAGC	9 cut(s)	212, 343, 738, 1708, 2371, 2519, 2896, 3901, 3904
BceAI	ACGGC	3 cut(s)	2948, 3135, 3512
BcgI	CGANNNNNNTGC	4 cut(s)	23, 57, 1432, 1466
BciT130I	CCWGG	5 cut(s)	392, 626, 2001, 2617, 3906
BciVI	GTATCC	2 cut(s)	842, 958
BclI	TGATCA	3 cut(s)	1276, 2473, 3325
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	7 cut(s)	638, 785, 1308, 1678, 1763, 1987, 2249
BfmI	CTRYAG	6 cut(s)	2029, 2409, 2689, 2747, 3036, 3708
BfoI	RGCGCY	2 cut(s)	234, 1131
BfuAI	ACCTGC	1 cut(s)	3155
BfuI	GTATCC	2 cut(s)	842, 958
BglI	GCCNNNNNGGC	1 cut(s)	2692
BglII	AGATCT	2 cut(s)	2033, 2975
BlpI	GCTNAGC	1 cut(s)	954
Bme1390I	CCNGG	6 cut(s)	130, 392, 626, 2001, 2617, 3906
Bme18I	GGWCC	6 cut(s)	211, 388, 857, 2017, 2854, 3839
BmgT120I	GGNCC	8 cut(s)	211, 248, 388, 622, 857, 2017, 2854, 3839
BmiI	GGNNCC	9 cut(s)	212, 259, 389, 623, 1011, 1205, 2855, 3013, 3482
BmrFI	CCNGG	6 cut(s)	130, 392, 626, 2001, 2617, 3906
BmrI	ACTGGG	2 cut(s)	176, 2019
BmuI	ACTGGG	2 cut(s)	176, 2019
BoxI	GACNNNNGTC	1 cut(s)	1775
BpiI	GAAGAC	5 cut(s)	1771, 2067, 2971, 3208, 3593
BpmI	CTGGAG	6 cut(s)	1501, 1590, 2022, 2590, 3755, 3960
Bpu10I	CCTNAGC	3 cut(s)	495, 3335, 3511
Bpu1102I	GCTNAGC	1 cut(s)	954
Bpu14I	TTCGAA	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	3876
BpuMI	CCSGG	1 cut(s)	130
BsaAI	YACGTR	1 cut(s)	1397
BsaHI	GRCGYC	3 cut(s)	28, 1807, 3598
BsaI	GGTCTC	1 cut(s)	1763
BsaJI	CCNNGG	6 cut(s)	199, 214, 934, 1189, 1773, 1951
BsaWI	WCCGGW	1 cut(s)	560
BsaXI	ACNNNNNCTCC	6 cut(s)	1258, 1288, 2522, 2552, 2938, 2968
Bse21I	CCTNAGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	552
BseBI	CCWGG	5 cut(s)	392, 626, 2001, 2617, 3906
BseDI	CCNNGG	6 cut(s)	199, 214, 934, 1189, 1773, 1951
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	6 cut(s)	243, 341, 486, 1758, 1998, 3525
BseRI	GAGGAG	2 cut(s)	1019, 1506
BseSI	GKGCMC	1 cut(s)	1445
BseX3I	CGGCCG	2 cut(s)	2933, 3972
BseXI	GCAGC	9 cut(s)	212, 343, 738, 1708, 2371, 2519, 2896, 3901, 3904
BseYI	CCCAGC	3 cut(s)	1438, 1896, 3713
BsgI	GTGCAG	1 cut(s)	737
Bsh1236I	CGCG	1 cut(s)	996
Bsh1285I	CGRYCG	2 cut(s)	2936, 3975
BshFI	GGCC	6 cut(s)	128, 249, 624, 2935, 3224, 3974
BshNI	GGYRCC	3 cut(s)	1009, 1203, 3011
BsiEI	CGRYCG	2 cut(s)	2936, 3975
BsiHKAI	GWGCWC	3 cut(s)	660, 1198, 1498
BsiSI	CCGG	2 cut(s)	129, 561
BslFI	GGGAC	4 cut(s)	795, 2728, 2867, 3491
BsmAI	GTCTC	7 cut(s)	638, 785, 1308, 1678, 1763, 1987, 2249
BsmFI	GGGAC	4 cut(s)	795, 2728, 2867, 3491
BsmI	GAATGC	5 cut(s)	204, 1966, 2208, 3067, 3729
BsnI	GGCC	6 cut(s)	128, 249, 624, 2935, 3224, 3974
Bso31I	GGTCTC	1 cut(s)	1763
Bsp119I	TTCGAA	1 cut(s)	270
Bsp1286I	GDGCHC	5 cut(s)	660, 1198, 1445, 1498, 2677
Bsp1720I	GCTNAGC	1 cut(s)	954
Bsp19I	CCATGG	3 cut(s)	214, 934, 1951
BspACI	CCGC	8 cut(s)	18, 228, 499, 520, 1804, 2290, 2357, 3971
BspANI	GGCC	6 cut(s)	128, 249, 624, 2935, 3224, 3974
BspCNI	CTCAG	6 cut(s)	244, 342, 487, 1759, 1997, 3524
BspFNI	CGCG	1 cut(s)	996
BspHI	TCATGA	1 cut(s)	3496
BspLI	GGNNCC	9 cut(s)	212, 259, 389, 623, 1011, 1205, 2855, 3013, 3482
BspMI	ACCTGC	1 cut(s)	3155
BspPI	GGATC	9 cut(s)	686, 1235, 2122, 2152, 2348, 3475, 3488, 3559, 3585
BspQI	GCTCTTC	1 cut(s)	8
BspT104I	TTCGAA	1 cut(s)	270
BspT107I	GGYRCC	3 cut(s)	1009, 1203, 3011
BspTNI	GGTCTC	1 cut(s)	1763
BsrBI	CCGCTC	2 cut(s)	18, 499
BsrDI	GCAATG	1 cut(s)	552
BssECI	CCNNGG	6 cut(s)	199, 214, 934, 1189, 1773, 1951
BssNI	GRCGYC	3 cut(s)	28, 1807, 3598
BssSI	CACGAG	1 cut(s)	22
BssT1I	CCWWGG	6 cut(s)	199, 214, 934, 1189, 1773, 1951
Bst2BI	CACGAG	1 cut(s)	22
Bst2UI	CCWGG	5 cut(s)	392, 626, 2001, 2617, 3906
Bst6I	CTCTTC	4 cut(s)	8, 510, 1365, 1421
BstACI	GRCGYC	3 cut(s)	28, 1807, 3598
BstAPI	GCANNNNNTGC	3 cut(s)	367, 751, 3671
BstBAI	YACGTR	1 cut(s)	1397
BstBI	TTCGAA	1 cut(s)	270
BstC8I	GCNNGC	6 cut(s)	721, 893, 1681, 2421, 2482, 3596
BstDSI	CCRYGG	3 cut(s)	214, 934, 1951
BstENI	CCTNNNNNAGG	1 cut(s)	2781
BstFNI	CGCG	1 cut(s)	996
BstH2I	RGCGCY	2 cut(s)	234, 1131
BstHHI	GCGC	3 cut(s)	233, 552, 1130
BstMAI	GTCTC	7 cut(s)	638, 785, 1308, 1678, 1763, 1987, 2249
BstMCI	CGRYCG	2 cut(s)	2936, 3975
BstNI	CCWGG	5 cut(s)	392, 626, 2001, 2617, 3906
BstNSI	RCATGY	6 cut(s)	788, 906, 2138, 2756, 2772, 3134
BstPAI	GACNNNNGTC	1 cut(s)	1775
BstSCI	CCNGG	6 cut(s)	128, 390, 624, 1999, 2615, 3904
BstSFI	CTRYAG	6 cut(s)	2029, 2409, 2689, 2747, 3036, 3708
BstSLI	GKGCMC	1 cut(s)	1445
BstUI	CGCG	1 cut(s)	996
BstV1I	GCAGC	9 cut(s)	212, 343, 738, 1708, 2371, 2519, 2896, 3901, 3904
BstV2I	GAAGAC	5 cut(s)	1771, 2067, 2971, 3208, 3593
BstX2I	RGATCY	4 cut(s)	2033, 2975, 3480, 3551
BstYI	RGATCY	4 cut(s)	2033, 2975, 3480, 3551
BstZI	CGGCCG	2 cut(s)	2933, 3972
Bsu36I	CCTNAGG	1 cut(s)	252
BsuI	GTATCC	2 cut(s)	842, 958
BsuRI	GGCC	6 cut(s)	128, 249, 624, 2935, 3224, 3974
BtgI	CCRYGG	3 cut(s)	214, 934, 1951
BtgZI	GCGATG	2 cut(s)	694, 2499
BtsI	GCAGTG	1 cut(s)	1233
BveI	ACCTGC	1 cut(s)	3155
Cac8I	GCNNGC	6 cut(s)	721, 893, 1681, 2421, 2482, 3596
CaiI	CAGNNNCTG	3 cut(s)	3594, 3733, 4036
CciI	TCATGA	1 cut(s)	3496
CfoI	GCGC	3 cut(s)	233, 552, 1130
Cfr13I	GGNCC	8 cut(s)	211, 248, 388, 622, 857, 2017, 2854, 3839
CseI	GACGC	5 cut(s)	17, 985, 1796, 1902, 3587
Csp6I	GTAC	7 cut(s)	564, 606, 946, 1134, 1835, 1901, 2348
CspCI	CAANNNNNGTGG	2 cut(s)	3777, 3812
CviQI	GTAC	7 cut(s)	564, 606, 946, 1134, 1835, 1901, 2348
EaeI	YGGCCR	3 cut(s)	126, 2933, 3972
EagI	CGGCCG	2 cut(s)	2933, 3972
Eam1104I	CTCTTC	4 cut(s)	8, 510, 1365, 1421
EarI	CTCTTC	4 cut(s)	8, 510, 1365, 1421
Ecl136II	GAGCTC	1 cut(s)	1496
EclXI	CGGCCG	2 cut(s)	2933, 3972
Eco130I	CCWWGG	6 cut(s)	199, 214, 934, 1189, 1773, 1951
Eco24I	GRGCYC	2 cut(s)	1498, 2677
Eco31I	GGTCTC	1 cut(s)	1763
Eco32I	GATATC	3 cut(s)	1506, 1876, 3946
Eco47I	GGWCC	6 cut(s)	211, 388, 857, 2017, 2854, 3839
Eco52I	CGGCCG	2 cut(s)	2933, 3972
Eco53kI	GAGCTC	1 cut(s)	1496
Eco57I	CTGAAG	2 cut(s)	2802, 3587
Eco81I	CCTNAGG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	1496
EcoNI	CCTNNNNNAGG	1 cut(s)	2781
EcoO109I	RGGNCCY	4 cut(s)	388, 622, 2854, 3839
EcoRI	GAATTC	1 cut(s)	1316
EcoRII	CCWGG	5 cut(s)	390, 624, 1999, 2615, 3904
EcoRV	GATATC	3 cut(s)	1506, 1876, 3946
EcoT14I	CCWWGG	6 cut(s)	199, 214, 934, 1189, 1773, 1951
EcoT22I	ATGCAT	2 cut(s)	1360, 1968
EcoT38I	GRGCYC	2 cut(s)	1498, 2677
ErhI	CCWWGG	6 cut(s)	199, 214, 934, 1189, 1773, 1951
FalI	AAGNNNNNCTT	4 cut(s)	1838, 1870, 2279, 2311
FaqI	GGGAC	4 cut(s)	795, 2728, 2867, 3491
FauI	CCCGC	1 cut(s)	2283
FauNDI	CATATG	5 cut(s)	674, 1861, 1941, 1973, 3191
FbaI	TGATCA	3 cut(s)	1276, 2473, 3325
FblI	GTMKAC	2 cut(s)	2328, 2773
FriOI	GRGCYC	2 cut(s)	1498, 2677
FspI	TGCGCA	1 cut(s)	551
GlaI	GCGC	3 cut(s)	232, 551, 1129
GsaI	CCCAGC	3 cut(s)	1442, 1900, 3717
GsuI	CTGGAG	6 cut(s)	1501, 1590, 2022, 2590, 3755, 3960
HaeII	RGCGCY	2 cut(s)	234, 1131
HaeIII	GGCC	6 cut(s)	128, 249, 624, 2935, 3224, 3974
HapII	CCGG	2 cut(s)	129, 561
HgaI	GACGC	5 cut(s)	17, 985, 1796, 1902, 3587
HhaI	GCGC	3 cut(s)	233, 552, 1130
Hin1I	GRCGYC	3 cut(s)	28, 1807, 3598
Hin6I	GCGC	3 cut(s)	231, 550, 1128
HinP1I	GCGC	3 cut(s)	231, 550, 1128
HincII	GTYRAC	3 cut(s)	2079, 3366, 3768
HindII	GTYRAC	3 cut(s)	2079, 3366, 3768
HindIII	AAGCTT	1 cut(s)	2874
HpaII	CCGG	2 cut(s)	129, 561
Hpy166II	GTNNAC	6 cut(s)	2079, 2329, 2774, 3366, 3768, 3880
Hpy8I	GTNNAC	6 cut(s)	2079, 2329, 2774, 3366, 3768, 3880
Hpy99I	CGWCG	1 cut(s)	1896
HpyCH4IV	ACGT	1 cut(s)	1396
HpySE526I	ACGT	1 cut(s)	1396
Hsp92I	GRCGYC	3 cut(s)	28, 1807, 3598
HspAI	GCGC	3 cut(s)	231, 550, 1128
Ksp22I	TGATCA	3 cut(s)	1276, 2473, 3325
LguI	GCTCTTC	1 cut(s)	8
LmnI	GCTCC	7 cut(s)	109, 655, 1193, 1493, 1571, 2131, 3108
Lsp1109I	GCAGC	9 cut(s)	212, 343, 738, 1708, 2371, 2519, 2896, 3901, 3904
MaeII	ACGT	1 cut(s)	1396
MaeIII	GTNAC	9 cut(s)	431, 586, 814, 1209, 1217, 2005, 2379, 2584, 4002
MbiI	CCGCTC	2 cut(s)	18, 499
MfeI	CAATTG	2 cut(s)	1014, 2788
MflI	RGATCY	4 cut(s)	2033, 2975, 3480, 3551
MhlI	GDGCHC	5 cut(s)	660, 1198, 1445, 1498, 2677
MlyI	GAGTC	6 cut(s)	306, 496, 722, 1666, 2251, 2525
MmeI	TCCRAC	4 cut(s)	1063, 2021, 2285, 2474
Mph1103I	ATGCAT	2 cut(s)	1360, 1968
MroXI	GAANNNNTTC	2 cut(s)	882, 3121
MslI	CAYNNNNRTG	5 cut(s)	243, 1201, 2139, 2398, 3647
MspA1I	CMGCKG	6 cut(s)	593, 751, 1169, 1313, 2150, 2887
MspI	CCGG	2 cut(s)	129, 561
MspR9I	CCNGG	6 cut(s)	130, 392, 626, 2001, 2617, 3906
MunI	CAATTG	2 cut(s)	1014, 2788
Mva1269I	GAATGC	5 cut(s)	204, 1966, 2208, 3067, 3729
MvaI	CCWGG	5 cut(s)	392, 626, 2001, 2617, 3906
MvnI	CGCG	1 cut(s)	996
NciI	CCSGG	1 cut(s)	130
NcoI	CCATGG	3 cut(s)	214, 934, 1951
NdeI	CATATG	5 cut(s)	674, 1861, 1941, 1973, 3191
NlaIV	GGNNCC	9 cut(s)	212, 259, 389, 623, 1011, 1205, 2855, 3013, 3482
NmeAIII	GCCGAG	1 cut(s)	2961
NmuCI	GTSAC	5 cut(s)	431, 586, 1209, 2379, 4002
NsbI	TGCGCA	1 cut(s)	551
NsiI	ATGCAT	2 cut(s)	1360, 1968
NspI	RCATGY	6 cut(s)	788, 906, 2138, 2756, 2772, 3134
NspV	TTCGAA	1 cut(s)	270
OliI	CACNNNNGTG	1 cut(s)	1201
PagI	TCATGA	1 cut(s)	3496
PaqCI	CACCTGC	1 cut(s)	3155
PciI	ACATGT	1 cut(s)	902
PciSI	GCTCTTC	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	892
PctI	GAATGC	5 cut(s)	204, 1966, 2208, 3067, 3729
PdmI	GAANNNNTTC	2 cut(s)	882, 3121
PfeI	GAWTC	4 cut(s)	3155, 3176, 3486, 4033
PflMI	CCANNNNNTGG	2 cut(s)	767, 1796
PfoI	TCCNGGA	3 cut(s)	390, 2615, 3904
PleI	GAGTC	6 cut(s)	305, 496, 722, 1665, 2251, 2525
PpsI	GAGTC	6 cut(s)	305, 496, 722, 1665, 2251, 2525
Ppu21I	YACGTR	1 cut(s)	1397
PpuMI	RGGWCCY	3 cut(s)	388, 2854, 3839
PscI	ACATGT	1 cut(s)	902
PshAI	GACNNNNGTC	1 cut(s)	1775
PshBI	ATTAAT	2 cut(s)	321, 3620
PsiI	TTATAA	1 cut(s)	1748
Psp124BI	GAGCTC	1 cut(s)	1498
Psp5II	RGGWCCY	3 cut(s)	388, 2854, 3839
Psp6I	CCWGG	5 cut(s)	390, 624, 1999, 2615, 3904
PspFI	CCCAGC	3 cut(s)	1438, 1896, 3713
PspGI	CCWGG	5 cut(s)	390, 624, 1999, 2615, 3904
PspN4I	GGNNCC	9 cut(s)	212, 259, 389, 623, 1011, 1205, 2855, 3013, 3482
PspPI	GGNCC	8 cut(s)	211, 248, 388, 622, 857, 2017, 2854, 3839
PspPPI	RGGWCCY	3 cut(s)	388, 2854, 3839
PstNI	CAGNNNCTG	3 cut(s)	3594, 3733, 4036
PsuI	RGATCY	4 cut(s)	2033, 2975, 3480, 3551
PvuII	CAGCTG	6 cut(s)	593, 751, 1169, 1313, 2150, 2887
RsaI	GTAC	7 cut(s)	565, 607, 947, 1135, 1836, 1902, 2349
RsaNI	GTAC	7 cut(s)	564, 606, 946, 1134, 1835, 1901, 2348
RseI	CAYNNNNRTG	5 cut(s)	243, 1201, 2139, 2398, 3647
SacI	GAGCTC	1 cut(s)	1498
SapI	GCTCTTC	1 cut(s)	8
Sau96I	GGNCC	8 cut(s)	211, 248, 388, 622, 857, 2017, 2854, 3839
SchI	GAGTC	6 cut(s)	306, 496, 722, 1666, 2251, 2525
ScrFI	CCNGG	6 cut(s)	130, 392, 626, 2001, 2617, 3906
SduI	GDGCHC	5 cut(s)	660, 1198, 1445, 1498, 2677
SfcI	CTRYAG	6 cut(s)	2029, 2409, 2689, 2747, 3036, 3708
SfuI	TTCGAA	1 cut(s)	270
SinI	GGWCC	6 cut(s)	211, 388, 857, 2017, 2854, 3839
SmiMI	CAYNNNNRTG	5 cut(s)	243, 1201, 2139, 2398, 3647
SmlI	CTYRAG	1 cut(s)	3891
SmoI	CTYRAG	1 cut(s)	3891
SsiI	CCGC	8 cut(s)	18, 228, 499, 520, 1804, 2290, 2357, 3971
SspI	AATATT	2 cut(s)	853, 2429
SstI	GAGCTC	1 cut(s)	1498
StyD4I	CCNGG	6 cut(s)	128, 390, 624, 1999, 2615, 3904
StyI	CCWWGG	6 cut(s)	199, 214, 934, 1189, 1773, 1951
TaiI	ACGT	1 cut(s)	1399
TaqI	TCGA	7 cut(s)	189, 270, 1565, 1891, 2534, 3042, 3624
TatI	WGTACW	1 cut(s)	605
TauI	GCSGC	4 cut(s)	21, 231, 1807, 3974
TfiI	GAWTC	4 cut(s)	3155, 3176, 3486, 4033
TseFI	GTSAC	5 cut(s)	431, 586, 1209, 2379, 4002
TseI	GCWGC	9 cut(s)	225, 331, 751, 1721, 2359, 2507, 2884, 3914, 3917
Tsp45I	GTSAC	5 cut(s)	431, 586, 1209, 2379, 4002
TspGWI	ACGGA	3 cut(s)	2079, 2181, 3564
Van91I	CCANNNNNTGG	2 cut(s)	767, 1796
VpaK11BI	GGWCC	6 cut(s)	211, 388, 857, 2017, 2854, 3839
VspI	ATTAAT	2 cut(s)	321, 3620
XagI	CCTNNNNNAGG	1 cut(s)	2781
XapI	RAATTY	9 cut(s)	1316, 1625, 1756, 1933, 3055, 3380, 3409, 3747, 4020
XceI	RCATGY	6 cut(s)	788, 906, 2138, 2756, 2772, 3134
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1790, 1797
XmiI	GTMKAC	2 cut(s)	2328, 2773
XmnI	GAANNNNTTC	2 cut(s)	882, 3121
Zsp2I	ATGCAT	2 cut(s)	1360, 1968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.