Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Reverse (-)

33404638 .. 33405955

Gene Structure 1318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45101

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCCTTCGCTGAATTTGAATAGATTTATCGTTAATTGTTTTTATATCCCCTCAAGTTCAAATTGCAGTGTGTTGCTGGGCACATTGGTCGCATCTGATGTCAAAATATCTCCATCAAGTTGTTTCAAAGGAGCTCATGGGATATCAAGCATCTCCAGTGTTGCTTTTGCTAGACTAAGTTCTAATCAGACTGAAATATGCTCGGCAACGCAAAATTTACTTTTTGATATAATACTTTTTTTTTTTTGTAGCATTTGTTTGAAGGATTTGGAATTTATAGGGATGAAACAAGTGAAGGAGTTGAGTCTTATTCAATCTGTCTCTGCATGCAATAGCTCTGTGAACAAGCTGTCAAACTGTCATTATGCTGCTGGTTTTGCATCAGTGGATTTTATAATTTGGAATTTATTAACTGATACCAAGGTAAATTCTCTTCCTGCTCATCATATTGCTTCCTCTAAGATGATTTATAAGATACTTGTGTTTTTTATTTTTTGGTGCCTAAGTGCATATTTGTTCCAGGTCTTCCAAATCCCATGTGGTGGATGGCGGCGTCCTCATTTCTATTATCTTGGTGATGTACCAGAGATAAAAAACTGCTTTGCATATGTTAAGGATGATATCATTTATATTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

212

Amino Acids

23.75

Weight (kDa)

8.27

Isoelectric Point (pI)

48.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	395, 471
AccB1I	GGYRCC	1 cut(s)	498
AccB7I	CCANNNNNTGG	1 cut(s)	542
AciI	CCGC	1 cut(s)	550
AcsI	RAATTY	5 cut(s)	13, 214, 272, 403, 427
AcyI	GRCGYC	1 cut(s)	553
AfaI	GTAC	1 cut(s)	582
AfiI	CCNNNNNNNGG	1 cut(s)	542
AgsI	TTSAA	5 cut(s)	19, 60, 127, 262, 314
AjnI	CCWGG	1 cut(s)	519
AluBI	AGCT	3 cut(s)	134, 336, 349
AluI	AGCT	3 cut(s)	134, 336, 349
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	325
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	5 cut(s)	13, 214, 272, 403, 427
AsuHPI	GGTGA	1 cut(s)	587
BaeGI	GKGCMC	1 cut(s)	83
BaeI	ACNNNNGTAYC	4 cut(s)	408, 441, 467, 500
BanI	GGYRCC	1 cut(s)	498
BanII	GRGCYC	1 cut(s)	136
BarI	GAAGNNNNNNTAC	2 cut(s)	417, 449
BbsI	GAAGAC	1 cut(s)	517
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	2 cut(s)	121, 540
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BciT130I	CCWGG	1 cut(s)	521
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	171
BisI	GCNGC	2 cut(s)	369, 551
BlsI	GCNGC	2 cut(s)	370, 552
Bme1390I	CCNGG	1 cut(s)	521
BmiI	GGNNCC	1 cut(s)	500
BmrFI	CCNGG	1 cut(s)	521
BmsI	GCATC	3 cut(s)	101, 159, 389
BpiI	GAAGAC	1 cut(s)	517
BpmI	CTGGAG	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	37
BsaHI	GRCGYC	1 cut(s)	553
BsaJI	CCNNGG	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	1 cut(s)	542
Bse1I	ACTGG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	1 cut(s)	420
BseGI	GGATG	3 cut(s)	288, 551, 622
BseLI	CCNNNNNNNGG	1 cut(s)	542
BseNI	ACTGG	1 cut(s)	156
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	355
BseYI	CCCAGC	1 cut(s)	76
BshNI	GGYRCC	1 cut(s)	498
BsiHKAI	GWGCWC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	542
BsmAI	GTCTC	1 cut(s)	325
Bsp1286I	GDGCHC	2 cut(s)	83, 136
BspACI	CCGC	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	500
BspT107I	GGYRCC	1 cut(s)	498
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	420
BssNI	GRCGYC	1 cut(s)	553
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	1 cut(s)	438
BstACI	GRCGYC	1 cut(s)	553
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	3 cut(s)	176, 459, 503
BstF5I	GGATG	3 cut(s)	288, 551, 622
BstMAI	GTCTC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	521
BstNSI	RCATGY	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	519
BstSLI	GKGCMC	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	355
BstV2I	GAAGAC	1 cut(s)	517
BtsCI	GGATG	3 cut(s)	288, 551, 622
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	3 cut(s)	73, 163, 390
Cac8I	GCNNGC	1 cut(s)	328
CseI	GACGC	1 cut(s)	542
Csp6I	GTAC	1 cut(s)	581
CviAII	CATG	3 cut(s)	137, 327, 537
CviJI	RGCY	3 cut(s)	134, 336, 349
CviKI_1	RGCY	3 cut(s)	134, 336, 349
CviQI	GTAC	1 cut(s)	581
DdeI	CTNAG	3 cut(s)	176, 459, 503
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Ecl136II	GAGCTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	136
Eco32I	GATATC	2 cut(s)	144, 622
Eco53kI	GAGCTC	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	519
EcoRV	GATATC	2 cut(s)	144, 622
EcoT14I	CCWWGG	1 cut(s)	420
EcoT38I	GRGCYC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	3 cut(s)	140, 330, 540
FatI	CATG	3 cut(s)	136, 326, 536
FauNDI	CATATG	1 cut(s)	607
Fnu4HI	GCNGC	2 cut(s)	369, 551
FokI	GGATG	3 cut(s)	295, 558, 629
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	2 cut(s)	369, 551
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	2 cut(s)	369, 551
GsaI	CCCAGC	1 cut(s)	80
GsuI	CTGGAG	1 cut(s)	139
HgaI	GACGC	1 cut(s)	542
Hin1I	GRCGYC	1 cut(s)	553
Hin1II	CATG	3 cut(s)	140, 330, 540
HinfI	GANTC	1 cut(s)	304
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	2 cut(s)	97, 189
Hpy8I	GTNNAC	1 cut(s)	343
HpyAV	CCTTC	3 cut(s)	15, 256, 289
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4V	TGCA	6 cut(s)	66, 326, 330, 380, 509, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	3 cut(s)	176, 459, 503
Hsp92I	GRCGYC	1 cut(s)	553
Hsp92II	CATG	3 cut(s)	140, 330, 540
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	7 cut(s)	62, 169, 357, 450, 506, 533, 597
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	3 cut(s)	101, 159, 389
MaeI	CTAG	1 cut(s)	171
MboII	GAAGA	2 cut(s)	425, 517
MhlI	GDGCHC	2 cut(s)	83, 136
MluCI	AATT	8 cut(s)	13, 34, 61, 214, 272, 396, 403, 427
MlyI	GAGTC	1 cut(s)	313
MnlI	CCTC	3 cut(s)	61, 466, 567
MseI	TTAA	3 cut(s)	33, 410, 612
MspR9I	CCNGG	1 cut(s)	521
MvaI	CCWGG	1 cut(s)	521
MwoI	GCNNNNNNNGC	1 cut(s)	377
NdeI	CATATG	1 cut(s)	607
NlaIII	CATG	3 cut(s)	140, 330, 540
NlaIV	GGNNCC	1 cut(s)	500
NmeAIII	GCCGAG	1 cut(s)	182
NspI	RCATGY	1 cut(s)	330
PaeI	GCATGC	1 cut(s)	330
PflMI	CCANNNNNTGG	1 cut(s)	542
PkrI	GCNGC	2 cut(s)	370, 552
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
PsiI	TTATAA	2 cut(s)	395, 471
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	519
PspFI	CCCAGC	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	1 cut(s)	500
RsaI	GTAC	1 cut(s)	582
RsaNI	GTAC	1 cut(s)	581
SacI	GAGCTC	1 cut(s)	136
SaqAI	TTAA	3 cut(s)	33, 410, 612
SatI	GCNGC	2 cut(s)	369, 551
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	1 cut(s)	521
SduI	GDGCHC	2 cut(s)	83, 136
SetI	ASST	5 cut(s)	136, 338, 351, 426, 525
SfaNI	GCATC	3 cut(s)	101, 159, 389
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
SphI	GCATGC	1 cut(s)	330
Sse9I	AATT	8 cut(s)	13, 34, 61, 214, 272, 396, 403, 427
SsiI	CCGC	1 cut(s)	550
SspMI	CTAG	1 cut(s)	171
SstI	GAGCTC	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	519
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	1 cut(s)	359
TasI	AATT	8 cut(s)	13, 34, 61, 214, 272, 396, 403, 427
TauI	GCSGC	1 cut(s)	553
Tru1I	TTAA	3 cut(s)	33, 410, 612
Tru9I	TTAA	3 cut(s)	33, 410, 612
TscAI	CASTG	3 cut(s)	73, 163, 390
TseI	GCWGC	1 cut(s)	368
TspDTI	ATGAA	2 cut(s)	299, 623
TspRI	CASTG	3 cut(s)	73, 163, 390
Van91I	CCANNNNNTGG	1 cut(s)	542
XapI	RAATTY	5 cut(s)	13, 214, 272, 403, 427
XceI	RCATGY	1 cut(s)	330
XcmI	CCANNNNNNNNNTGG	2 cut(s)	536, 543
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.