pycom17g27900

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
25949155 .. 25952809
3655 bp
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UTR
Exon/CDS
Intron
pycom17g27900.4

Sequence Viewer

Length: 1392 bp
ATGGGAAGAATGGTGAGGTCGTTCGACGTGTTCCGAGGGATTCGAGTGCACGGGATAATCTGTTGTAGCTCTACTTCTAGTACTGAATGCGCAGATGGAACACTAGCTTCTTCTGTTGCTTTCGAAATCACGGTGTTCGGAGAAAGGAGAGTGAAGATGTTTAGTTTGCAGATTGAAACGGAGCAGCAAGTCAGTGTCAGTTTTACTCTATTGCAAACCTTGCCAAAGTTCGCGAATTGGGTCCTGGATGTTTCCTTCTTCAAGGATGATTGTCTTGCTGTAGATTGTAGTGACAACTCTGTCCATATATGGGATGTCTCAGCTTCTTCCGTGGTTCTTCAAGTTCGACATCCTGAGAGGACCCTTCTTTATTCAATGCGGTTATGGGGTGCCACTGTTCAAGCTCTCCATGTTGCATCTCGCACTATCTATAATGAGTATAATGCTGCATCTTTAACTAATCAAGTAGAAGACGGCATTGATCATATACGCAAACTTGTTGGACATGAAGGTTCAATCTTTCGGATAGCCTGGTCTTTTGATGGAACCAAATTGGTTTCTGTCTCTGATGATCGTAGTGCTCGTGTCTGGGCAGTTTGTGCGGAAACAAAGCATTCTGAAAAGCCAGGAGACCCCATTGGCCTTGTTTTGTTTGGTCACAATGCCCGAGTTTGGGACTGCTGTATTCTTGGTTCAGTAAGCTTTACAAAAGTTTTTGAAGGAAGGGGCATATGGCGATGTTTGTACAATCCAAACTCTTCACTGCTCATTACTGATGGTTTTGATTCTGCAATTAAAGTGCATCAGCTGCACACTTCCTCTGGGGGCCTTGAGGGACATGCAGAGACAAAAGAATTTACTAGAATGATTACATACACAGTTCATATCCCTACTTTTTTCAGAGAATATTGGACCTATGGACAGAAGAATTGTTTCCCTTTTCTAATTTGGCCCAGAAAAAGCGAATATGTCGGTCGCTTGCACTTTGCTTGTGAGGATACCCTTTATGTTTCAACAAACCATGGCTATCTGTACCATGCTAGATTATTGGACACTGGAGAAATAGAATGGACTGAACTTGTCCACCTCAGTGAAGAGGTCCAGATTGTTTGCATGGATTTATTTTCAGAACCGTTTGAACTTTGCTCCAACATTGAGGACTGGGTTGCTGTTGGAGACGGAAAAGGAAACGTAACAATTGTTGGGGTTATATGTGATGGTTGTACTCCTAAAGTGGGTTTCTCCCTTACTTGGTCAGCTGGAATGGAGCGACAACTCCTAGGAACACATTGGTCCAAGTCACTAGGTTCTGGGTATATCTTCACTGCTGATCCTAGAGGAACATTAAAGCTCTGGAAATTATCTGACCATTCTGCAATGTCTCTCTTATAG

Protein Analysis

464

Amino Acids

51.97

Weight (kDa)

5.9

Isoelectric Point (pI)

30.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 299
Acc16I TGCGCA 1 cut(s) 91
AccB1I GGYRCC 1 cut(s) 389
AccII CGCG 1 cut(s) 233
AciI CCGC 2 cut(s) 379, 602
AclWI GGATC 1 cut(s) 1325
AcsI RAATTY 1 cut(s) 854
AfaI GTAC 4 cut(s) 82, 746, 1034, 1225
AfiI CCNNNNNNNGG 5 cut(s) 310, 672, 673, 1235, 1251
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 9 cut(s) 176, 262, 341, 375, 401, 516, 719, 1014, 1139
AjiI CACGTC 1 cut(s) 28
AjnI CCWGG 3 cut(s) 243, 530, 625
AleI CACNNNNGTG 1 cut(s) 1089
AluBI AGCT 8 cut(s) 69, 107, 323, 404, 702, 808, 1259, 1351
AluI AGCT 8 cut(s) 69, 107, 323, 404, 702, 808, 1259, 1351
Alw21I GWGCWC 2 cut(s) 51, 583
Alw26I GTCTC 6 cut(s) 322, 568, 624, 839, 1170, 1386
Alw44I GTGCAC 1 cut(s) 47
AlwI GGATC 1 cut(s) 1325
Ama87I CYCGRG 1 cut(s) 666
AoxI GGCC 3 cut(s) 640, 826, 950
ApaLI GTGCAC 1 cut(s) 47
ApeKI GCWGC 3 cut(s) 184, 446, 808
ApoI RAATTY 1 cut(s) 854
Asp700I GAANNNNTTC 1 cut(s) 932
AspA2I CCTAGG 1 cut(s) 1279
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 7 cut(s) 241, 360, 826, 912, 951, 1099, 1293
AsuHPI GGTGA 1 cut(s) 25
AsuII TTCGAA 1 cut(s) 123
AvaI CYCGRG 1 cut(s) 666
AvaII GGWCC 5 cut(s) 241, 360, 912, 1099, 1293
AvrII CCTAGG 1 cut(s) 1279
BaeGI GKGCMC 1 cut(s) 51
BanI GGYRCC 1 cut(s) 389
BarI GAAGNNNNNNTAC 2 cut(s) 58, 90
BauI CACGAG 1 cut(s) 582
BbsI GAAGAC 1 cut(s) 477
Bbv12I GWGCWC 2 cut(s) 51, 583
BbvI GCAGC 3 cut(s) 196, 433, 795
BccI CCATC 4 cut(s) 89, 536, 770, 1211
BceAI ACGGC 1 cut(s) 490
BciT130I CCWGG 3 cut(s) 245, 532, 627
BciVI GTATCC 1 cut(s) 991
BclI TGATCA 1 cut(s) 481
BcoDI GTCTC 6 cut(s) 322, 568, 624, 839, 1170, 1386
BfaI CTAG 7 cut(s) 78, 104, 861, 1041, 1280, 1304, 1335
BfmI CTRYAG 1 cut(s) 279
BfuI GTATCC 1 cut(s) 991
BisI GCNGC 3 cut(s) 185, 447, 809
BlnI CCTAGG 1 cut(s) 1279
BlsI GCNGC 3 cut(s) 186, 448, 810
BmcAI AGTACT 1 cut(s) 82
Bme1390I CCNGG 3 cut(s) 245, 532, 627
Bme18I GGWCC 5 cut(s) 241, 360, 912, 1099, 1293
BmeT110I CYCGRG 1 cut(s) 666
BmgBI CACGTC 1 cut(s) 28
BmgT120I GGNCC 7 cut(s) 241, 360, 826, 912, 951, 1099, 1293
BmiI GGNNCC 5 cut(s) 242, 362, 391, 547, 827
BmrFI CCNGG 3 cut(s) 245, 532, 627
BmrI ACTGGG 1 cut(s) 1171
BmsI GCATC 3 cut(s) 425, 458, 811
BmuI ACTGGG 1 cut(s) 1171
BpiI GAAGAC 1 cut(s) 477
BpmI CTGGAG 1 cut(s) 1077
Bpu14I TTCGAA 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 851
BsaI GGTCTC 1 cut(s) 624
BsaJI CCNNGG 4 cut(s) 34, 330, 1021, 1279
Bsc4I CCNNNNNNNGG 5 cut(s) 310, 672, 673, 1235, 1251
Bse1I ACTGG 2 cut(s) 1060, 1166
Bse3DI GCAATG 1 cut(s) 1383
BseBI CCWGG 3 cut(s) 245, 532, 627
BseDI CCNNGG 4 cut(s) 34, 330, 1021, 1279
BseGI GGATG 4 cut(s) 253, 271, 319, 349
BseLI CCNNNNNNNGG 5 cut(s) 310, 672, 673, 1235, 1251
BseMI GCAATG 1 cut(s) 1383
BseMII CTCAG 3 cut(s) 333, 345, 1102
BseNI ACTGG 2 cut(s) 1060, 1166
BseSI GKGCMC 1 cut(s) 51
BseXI GCAGC 3 cut(s) 196, 433, 795
BsgI GTGCAG 1 cut(s) 794
Bsh1236I CGCG 1 cut(s) 233
Bsh1285I CGRYCG 1 cut(s) 976
BshFI GGCC 3 cut(s) 642, 828, 952
BshNI GGYRCC 1 cut(s) 389
BsiEI CGRYCG 1 cut(s) 976
BsiHKAI GWGCWC 2 cut(s) 51, 583
BsiHKCI CYCGRG 1 cut(s) 666
BslFI GGGAC 2 cut(s) 689, 849
BslI CCNNNNNNNGG 5 cut(s) 310, 672, 673, 1235, 1251
BsmAI GTCTC 6 cut(s) 322, 568, 624, 839, 1170, 1386
BsmBI CGTCTC 1 cut(s) 1170
BsmFI GGGAC 2 cut(s) 689, 849
BsmI GAATGC 2 cut(s) 92, 613
BsnI GGCC 3 cut(s) 642, 828, 952
Bso31I GGTCTC 1 cut(s) 624
BsoBI CYCGRG 1 cut(s) 666
Bsp119I TTCGAA 1 cut(s) 123
Bsp1286I GDGCHC 2 cut(s) 51, 583
Bsp1407I TGTACA 1 cut(s) 744
Bsp143I GATC 3 cut(s) 481, 571, 1330
Bsp19I CCATGG 1 cut(s) 1021
Bsp68I TCGCGA 1 cut(s) 233
BspACI CCGC 2 cut(s) 379, 602
BspANI GGCC 3 cut(s) 642, 828, 952
BspCNI CTCAG 3 cut(s) 332, 346, 1101
BspFNI CGCG 1 cut(s) 233
BspLI GGNNCC 5 cut(s) 242, 362, 391, 547, 827
BspPI GGATC 1 cut(s) 1325
BspT104I TTCGAA 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 389
BspTNI GGTCTC 1 cut(s) 624
BsrDI GCAATG 1 cut(s) 1383
BsrGI TGTACA 1 cut(s) 744
BsrI ACTGG 2 cut(s) 1060, 1166
BssECI CCNNGG 4 cut(s) 34, 330, 1021, 1279
BssMI GATC 3 cut(s) 481, 571, 1330
BssSI CACGAG 1 cut(s) 582
BssT1I CCWWGG 2 cut(s) 1021, 1279
Bst2BI CACGAG 1 cut(s) 582
Bst2UI CCWGG 3 cut(s) 245, 532, 627
Bst4CI ACNGT 4 cut(s) 133, 397, 880, 1134
Bst6I CTCTTC 2 cut(s) 763, 1089
BstAPI GCANNNNNTGC 3 cut(s) 220, 599, 808
BstAUI TGTACA 1 cut(s) 744
BstBI TTCGAA 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 980
BstDEI CTNAG 3 cut(s) 319, 354, 1088
BstDSI CCRYGG 2 cut(s) 330, 1021
BstF5I GGATG 4 cut(s) 253, 271, 319, 349
BstFNI CGCG 1 cut(s) 233
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 3 cut(s) 484, 574, 1333
BstMAI GTCTC 6 cut(s) 322, 568, 624, 839, 1170, 1386
BstMBI GATC 3 cut(s) 481, 571, 1330
BstMCI CGRYCG 1 cut(s) 976
BstMWI GCNNNNNNNGC 3 cut(s) 220, 599, 808
BstNI CCWGG 3 cut(s) 245, 532, 627
BstNSI RCATGY 1 cut(s) 842
BstSCI CCNGG 3 cut(s) 243, 530, 625
BstSFI CTRYAG 1 cut(s) 279
BstSLI GKGCMC 1 cut(s) 51
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 3 cut(s) 196, 433, 795
BstV2I GAAGAC 1 cut(s) 477
BsuI GTATCC 1 cut(s) 991
BsuRI GGCC 3 cut(s) 642, 828, 952
BtgI CCRYGG 2 cut(s) 330, 1021
BtgZI GCGATG 1 cut(s) 751
BtrI CACGTC 1 cut(s) 28
BtsCI GGATG 4 cut(s) 253, 271, 319, 349
BtsI GCAGTG 2 cut(s) 761, 1323
BtsIMutI CAGTG 6 cut(s) 199, 393, 761, 1053, 1096, 1323
BtuMI TCGCGA 1 cut(s) 233
Cac8I GCNNGC 1 cut(s) 980
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 7 cut(s) 241, 360, 826, 912, 951, 1099, 1293
Csp6I GTAC 4 cut(s) 81, 745, 1033, 1224
CviAII CATG 6 cut(s) 410, 506, 839, 1022, 1037, 1114
CviQI GTAC 4 cut(s) 81, 745, 1033, 1224
DdeI CTNAG 3 cut(s) 319, 354, 1088
DpnI GATC 3 cut(s) 483, 573, 1332
DpnII GATC 3 cut(s) 481, 571, 1330
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
Eam1104I CTCTTC 2 cut(s) 763, 1089
EarI CTCTTC 2 cut(s) 763, 1089
Eco130I CCWWGG 2 cut(s) 1021, 1279
Eco31I GGTCTC 1 cut(s) 624
Eco47I GGWCC 5 cut(s) 241, 360, 912, 1099, 1293
Eco88I CYCGRG 1 cut(s) 666
EcoO109I RGGNCCY 3 cut(s) 241, 360, 826
EcoRII CCWGG 3 cut(s) 243, 530, 625
EcoT14I CCWWGG 2 cut(s) 1021, 1279
ErhI CCWWGG 2 cut(s) 1021, 1279
Esp3I CGTCTC 1 cut(s) 1170
FaeI CATG 6 cut(s) 413, 509, 842, 1025, 1040, 1117
FaqI GGGAC 2 cut(s) 689, 849
FatI CATG 6 cut(s) 409, 505, 838, 1021, 1036, 1113
FauNDI CATATG 1 cut(s) 731
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 3 cut(s) 185, 447, 809
FokI GGATG 4 cut(s) 260, 278, 326, 336
Fsp4HI GCNGC 3 cut(s) 185, 447, 809
FspBI CTAG 7 cut(s) 78, 104, 861, 1041, 1280, 1304, 1335
FspI TGCGCA 1 cut(s) 91
GlaI GCGC 1 cut(s) 91
GluI GCNGC 3 cut(s) 185, 447, 809
GsuI CTGGAG 1 cut(s) 1077
HaeIII GGCC 3 cut(s) 642, 828, 952
HhaI GCGC 1 cut(s) 92
Hin1II CATG 6 cut(s) 413, 509, 842, 1025, 1040, 1117
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HindIII AAGCTT 1 cut(s) 700
HinfI GANTC 2 cut(s) 40, 785
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 2 cut(s) 49, 1084
Hpy188I TCNGA 8 cut(s) 35, 140, 525, 568, 619, 902, 1129, 1366
Hpy188III TCNNGA 4 cut(s) 232, 353, 1102, 1354
Hpy8I GTNNAC 2 cut(s) 49, 1084
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 5 cut(s) 265, 374, 503, 713, 717
HpyCH4III ACNGT 4 cut(s) 133, 397, 880, 1134
HpyCH4IV ACGT 2 cut(s) 27, 1191
HpyF10VI GCNNNNNNNGC 3 cut(s) 220, 599, 808
HpyF3I CTNAG 3 cut(s) 319, 354, 1088
HpySE526I ACGT 2 cut(s) 27, 1191
Hsp92II CATG 6 cut(s) 413, 509, 842, 1025, 1040, 1117
HspAI GCGC 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 3 cut(s) 481, 571, 1330
LmnI GCTCC 3 cut(s) 181, 1151, 1267
Lsp1109I GCAGC 3 cut(s) 196, 433, 795
LweI GCATC 3 cut(s) 425, 458, 811
MaeI CTAG 7 cut(s) 78, 104, 861, 1041, 1280, 1304, 1335
MaeII ACGT 2 cut(s) 27, 1191
MaeIII GTNAC 4 cut(s) 290, 656, 1192, 1299
MalI GATC 3 cut(s) 483, 573, 1332
MboI GATC 3 cut(s) 481, 571, 1330
MfeI CAATTG 1 cut(s) 1197
MhlI GDGCHC 2 cut(s) 51, 583
MluCI AATT 8 cut(s) 235, 551, 792, 854, 928, 945, 1197, 1358
MmeI TCCRAC 3 cut(s) 481, 1153, 1173
MroXI GAANNNNTTC 1 cut(s) 932
MseI TTAA 3 cut(s) 455, 795, 1346
MslI CAYNNNNRTG 1 cut(s) 1089
MspA1I CMGCKG 2 cut(s) 808, 1259
MspR9I CCNGG 3 cut(s) 245, 532, 627
MunI CAATTG 1 cut(s) 1197
Mva1269I GAATGC 2 cut(s) 92, 613
MvaI CCWGG 3 cut(s) 245, 532, 627
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 3 cut(s) 220, 599, 808
NcoI CCATGG 1 cut(s) 1021
NdeI CATATG 1 cut(s) 731
NdeII GATC 3 cut(s) 481, 571, 1330
NlaIII CATG 6 cut(s) 413, 509, 842, 1025, 1040, 1117
NlaIV GGNNCC 5 cut(s) 242, 362, 391, 547, 827
NmuCI GTSAC 3 cut(s) 290, 656, 1299
NruI TCGCGA 1 cut(s) 233
NsbI TGCGCA 1 cut(s) 91
NspI RCATGY 1 cut(s) 842
NspV TTCGAA 1 cut(s) 123
OliI CACNNNNGTG 1 cut(s) 1089
PcsI WCGNNNNNNNCGW 1 cut(s) 580
PctI GAATGC 2 cut(s) 92, 613
PdmI GAANNNNTTC 1 cut(s) 932
PfeI GAWTC 2 cut(s) 40, 785
PfoI TCCNGGA 1 cut(s) 243
PkrI GCNGC 3 cut(s) 186, 448, 810
PpuMI RGGWCCY 2 cut(s) 241, 360
Psp5II RGGWCCY 2 cut(s) 241, 360
Psp6I CCWGG 3 cut(s) 243, 530, 625
PspGI CCWGG 3 cut(s) 243, 530, 625
PspN4I GGNNCC 5 cut(s) 242, 362, 391, 547, 827
PspPI GGNCC 7 cut(s) 241, 360, 826, 912, 951, 1099, 1293
PspPPI RGGWCCY 2 cut(s) 241, 360
PsrI GAACNNNNNNTAC 2 cut(s) 676, 708
PvuII CAGCTG 2 cut(s) 808, 1259
RruI TCGCGA 1 cut(s) 233
RsaI GTAC 4 cut(s) 82, 746, 1034, 1225
RsaNI GTAC 4 cut(s) 81, 745, 1033, 1224
RseI CAYNNNNRTG 1 cut(s) 1089
SaqAI TTAA 3 cut(s) 455, 795, 1346
SatI GCNGC 3 cut(s) 185, 447, 809
Sau3AI GATC 3 cut(s) 481, 571, 1330
Sau96I GGNCC 7 cut(s) 241, 360, 826, 912, 951, 1099, 1293
ScaI AGTACT 1 cut(s) 82
ScrFI CCNGG 3 cut(s) 245, 532, 627
SduI GDGCHC 2 cut(s) 51, 583
SfaNI GCATC 3 cut(s) 425, 458, 811
SfcI CTRYAG 1 cut(s) 279
SfuI TTCGAA 1 cut(s) 123
SinI GGWCC 5 cut(s) 241, 360, 912, 1099, 1293
SmiMI CAYNNNNRTG 1 cut(s) 1089
SmlI CTYRAG 1 cut(s) 830
SmoI CTYRAG 1 cut(s) 830
Sse9I AATT 8 cut(s) 235, 551, 792, 854, 928, 945, 1197, 1358
SsiI CCGC 2 cut(s) 379, 602
SspI AATATT 1 cut(s) 908
SspMI CTAG 7 cut(s) 78, 104, 861, 1041, 1280, 1304, 1335
StyD4I CCNGG 3 cut(s) 243, 530, 625
StyI CCWWGG 2 cut(s) 1021, 1279
TaaI ACNGT 4 cut(s) 133, 397, 880, 1134
TaiI ACGT 2 cut(s) 30, 1194
TaqI TCGA 4 cut(s) 24, 43, 123, 346
TaqII GACCGA 1 cut(s) 962
TasI AATT 8 cut(s) 235, 551, 792, 854, 928, 945, 1197, 1358
TatI WGTACW 3 cut(s) 80, 744, 1223
TfiI GAWTC 2 cut(s) 40, 785
Tru1I TTAA 3 cut(s) 455, 795, 1346
Tru9I TTAA 3 cut(s) 455, 795, 1346
TscAI CASTG 6 cut(s) 199, 400, 768, 1060, 1096, 1330
TseFI GTSAC 3 cut(s) 290, 656, 1299
TseI GCWGC 3 cut(s) 184, 446, 808
Tsp45I GTSAC 3 cut(s) 290, 656, 1299
TspDTI ATGAA 2 cut(s) 522, 872
TspGWI ACGGA 3 cut(s) 194, 319, 1194
TspRI CASTG 6 cut(s) 199, 400, 768, 1060, 1096, 1330
VneI GTGCAC 1 cut(s) 47
VpaK11BI GGWCC 5 cut(s) 241, 360, 912, 1099, 1293
XapI RAATTY 1 cut(s) 854
XceI RCATGY 1 cut(s) 842
XmaJI CCTAGG 1 cut(s) 1279
XmnI GAANNNNTTC 1 cut(s) 932
XspI CTAG 7 cut(s) 78, 104, 861, 1041, 1280, 1304, 1335
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.