Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Reverse (-)

27624246 .. 27626256

Gene Structure 2011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00022380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGATTGCATGTCACAACCTACTGTCTACAGGATCAAAGACCTTCGATAGGGGTAATCAAAGACAAAGCCTCTCGAGCAAAGCGACAAACCTCTCCACAATCAACACCGCCGCCAACAAGACTCCTCAATCATCCCAATCTCTCCACCTCGCCCTCCTCTCGCGCCACCACCCACGAACCTTCTCACTGTCGATAAGGGAGCTTCCTTATTTAGTTGCCGGGTCGGGTTCGCAAATCTTGGTCTATGATTTGGAACCGGGAACCATGATGAGGTCGTTTGACGTTTTCCAAGGCATTCGCGTCCATGGGATTTGCCGCGGCGCTACTCGTACCGATGGCCCCGAGGGAACCGTTGCTTTCGAAATCGCCGTGTTTGGGGAAAGGAGAGTCAAGGTGTTTAGATTGGAGATTAATTTGGGGCAAGCAAGTCGGTGTTGGTCCGAGGTCGTTGCACTTGGTCGCCTTTGTTGGAAATCTTGGTCTATGGATTTGGGATCATCAACCATGATGAAGGTCGTTTGTATTGCTATTCTAGTGACAATTCGCATCCATGGGATGTTGCCGCGCGCTACTCGTGGTTCTTCTAGCGGGCATCCGAGGGAAACCATTGAAGCTTTCGCAATGCATCCGTTATGGGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

214

Amino Acids

23.57

Weight (kDa)

10.12

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	26
AccII	CGCG	5 cut(s)	163, 300, 318, 565, 567
AciI	CCGC	6 cut(s)	108, 111, 316, 318, 563, 588
AclWI	GGATC	2 cut(s)	40, 502
AfaI	GTAC	1 cut(s)	331
AfiI	CCNNNNNNNGG	4 cut(s)	48, 270, 375, 635
AgsI	TTSAA	1 cut(s)	611
AluBI	AGCT	2 cut(s)	202, 614
AluI	AGCT	2 cut(s)	202, 614
AlwI	GGATC	2 cut(s)	40, 502
Ama87I	CYCGRG	2 cut(s)	73, 341
AoxI	GGCC	1 cut(s)	337
AseI	ATTAAT	1 cut(s)	411
AspLEI	GCGC	4 cut(s)	165, 323, 567, 569
AspS9I	GGNCC	2 cut(s)	338, 438
AsuC2I	CCSGG	2 cut(s)	220, 258
AsuII	TTCGAA	1 cut(s)	360
AvaI	CYCGRG	2 cut(s)	73, 341
AvaII	GGWCC	1 cut(s)	438
BauI	CACGAG	1 cut(s)	573
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	1 cut(s)	353
BcgI	CGANNNNNNTGC	4 cut(s)	410, 431, 444, 465
BcnI	CCSGG	2 cut(s)	220, 258
BfaI	CTAG	2 cut(s)	533, 585
BfmI	CTRYAG	1 cut(s)	27
BfoI	RGCGCY	1 cut(s)	324
BisI	GCNGC	4 cut(s)	111, 316, 319, 563
BlsI	GCNGC	4 cut(s)	112, 317, 320, 564
Bme1390I	CCNGG	2 cut(s)	220, 258
Bme18I	GGWCC	1 cut(s)	438
BmeT110I	CYCGRG	2 cut(s)	73, 341
BmgT120I	GGNCC	2 cut(s)	338, 438
BmiI	GGNNCC	4 cut(s)	255, 262, 340, 349
BmrFI	CCNGG	2 cut(s)	220, 258
BmsI	GCATC	3 cut(s)	555, 601, 634
Bpu14I	TTCGAA	1 cut(s)	360
BpuMI	CCSGG	2 cut(s)	220, 258
BsaJI	CCNNGG	7 cut(s)	289, 304, 316, 342, 441, 550, 596
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 270, 375, 635
Bse3DI	GCAATG	1 cut(s)	627
BseDI	CCNNGG	7 cut(s)	289, 304, 316, 342, 441, 550, 596
BseGI	GGATG	5 cut(s)	131, 546, 561, 592, 625
BseLI	CCNNNNNNNGG	4 cut(s)	48, 270, 375, 635
BseMI	GCAATG	1 cut(s)	627
BsePI	GCGCGC	1 cut(s)	565
BseRI	GAGGAG	2 cut(s)	114, 146
Bsh1236I	CGCG	5 cut(s)	163, 300, 318, 565, 567
BshFI	GGCC	1 cut(s)	339
BsiHKCI	CYCGRG	2 cut(s)	73, 341
BsiSI	CCGG	2 cut(s)	219, 257
BslI	CCNNNNNNNGG	4 cut(s)	48, 270, 375, 635
BsmI	GAATGC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	339
BsoBI	CYCGRG	2 cut(s)	73, 341
Bsp119I	TTCGAA	1 cut(s)	360
Bsp143I	GATC	2 cut(s)	32, 494
Bsp19I	CCATGG	2 cut(s)	304, 550
BspACI	CCGC	6 cut(s)	108, 111, 316, 318, 563, 588
BspANI	GGCC	1 cut(s)	339
BspFNI	CGCG	5 cut(s)	163, 300, 318, 565, 567
BspLI	GGNNCC	4 cut(s)	255, 262, 340, 349
BspPI	GGATC	2 cut(s)	40, 502
BspT104I	TTCGAA	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	627
BssECI	CCNNGG	7 cut(s)	289, 304, 316, 342, 441, 550, 596
BssHII	GCGCGC	1 cut(s)	565
BssMI	GATC	2 cut(s)	32, 494
BssSI	CACGAG	1 cut(s)	573
BssT1I	CCWWGG	3 cut(s)	289, 304, 550
Bst2BI	CACGAG	1 cut(s)	573
Bst4CI	ACNGT	3 cut(s)	24, 189, 352
BstBI	TTCGAA	1 cut(s)	360
BstC8I	GCNNGC	3 cut(s)	423, 567, 590
BstDSI	CCRYGG	3 cut(s)	304, 316, 550
BstENI	CCTNNNNNAGG	1 cut(s)	46
BstF5I	GGATG	5 cut(s)	131, 546, 561, 592, 625
BstFNI	CGCG	5 cut(s)	163, 300, 318, 565, 567
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	4 cut(s)	165, 323, 567, 569
BstKTI	GATC	2 cut(s)	35, 497
BstMBI	GATC	2 cut(s)	32, 494
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNSI	RCATGY	1 cut(s)	12
BstSCI	CCNGG	2 cut(s)	218, 256
BstSFI	CTRYAG	1 cut(s)	27
BstUI	CGCG	5 cut(s)	163, 300, 318, 565, 567
BsuRI	GGCC	1 cut(s)	339
BtgI	CCRYGG	3 cut(s)	304, 316, 550
BtsCI	GGATG	5 cut(s)	131, 546, 561, 592, 625
BtsIMutI	CAGTG	1 cut(s)	185
Cac8I	GCNNGC	3 cut(s)	423, 567, 590
CfoI	GCGC	4 cut(s)	165, 323, 567, 569
Cfr13I	GGNCC	2 cut(s)	338, 438
Cfr42I	CCGCGG	1 cut(s)	319
CseI	GACGC	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	5 cut(s)	9, 265, 305, 505, 551
CviJI	RGCY	4 cut(s)	69, 202, 339, 614
CviKI_1	RGCY	4 cut(s)	69, 202, 339, 614
CviQI	GTAC	1 cut(s)	330
DpnI	GATC	2 cut(s)	34, 496
DpnII	GATC	2 cut(s)	32, 494
Eco130I	CCWWGG	3 cut(s)	289, 304, 550
Eco47I	GGWCC	1 cut(s)	438
Eco88I	CYCGRG	2 cut(s)	73, 341
EcoNI	CCTNNNNNAGG	1 cut(s)	46
EcoT14I	CCWWGG	3 cut(s)	289, 304, 550
EcoT22I	ATGCAT	1 cut(s)	627
ErhI	CCWWGG	3 cut(s)	289, 304, 550
FaeI	CATG	5 cut(s)	12, 268, 308, 508, 554
FaiI	YATR	8 cut(s)	10, 246, 266, 306, 485, 506, 552, 634
FatI	CATG	5 cut(s)	8, 264, 304, 504, 550
FauI	CCCGC	1 cut(s)	581
FblI	GTMKAC	1 cut(s)	26
Fnu4HI	GCNGC	4 cut(s)	111, 316, 319, 563
FokI	GGATG	5 cut(s)	118, 533, 568, 579, 612
Fsp4HI	GCNGC	4 cut(s)	111, 316, 319, 563
FspBI	CTAG	2 cut(s)	533, 585
GlaI	GCGC	4 cut(s)	164, 322, 566, 568
GluI	GCNGC	4 cut(s)	111, 316, 319, 563
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	339
HapII	CCGG	2 cut(s)	219, 257
HgaI	GACGC	1 cut(s)	289
HhaI	GCGC	4 cut(s)	165, 323, 567, 569
Hin1II	CATG	5 cut(s)	12, 268, 308, 508, 554
Hin6I	GCGC	4 cut(s)	163, 321, 565, 567
HinP1I	GCGC	4 cut(s)	163, 321, 565, 567
HindIII	AAGCTT	1 cut(s)	612
HinfI	GANTC	2 cut(s)	121, 387
HpaII	CCGG	2 cut(s)	219, 257
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	2 cut(s)	442, 597
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	27
HpyAV	CCTTC	3 cut(s)	52, 190, 505
HpyCH4III	ACNGT	3 cut(s)	24, 189, 352
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	3 cut(s)	8, 452, 625
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	5 cut(s)	12, 268, 308, 508, 554
HspAI	GCGC	4 cut(s)	163, 321, 565, 567
KspI	CCGCGG	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	32, 494
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	3 cut(s)	15, 232, 270
LweI	GCATC	3 cut(s)	555, 601, 634
MaeI	CTAG	2 cut(s)	533, 585
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	2 cut(s)	11, 535
MalI	GATC	2 cut(s)	34, 496
MboI	GATC	2 cut(s)	32, 494
MboII	GAAGA	1 cut(s)	573
MluCI	AATT	2 cut(s)	412, 540
MlyI	GAGTC	2 cut(s)	115, 396
MmeI	TCCRAC	1 cut(s)	449
Mph1103I	ATGCAT	1 cut(s)	627
MseI	TTAA	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	318
MspI	CCGG	2 cut(s)	219, 257
MspR9I	CCNGG	2 cut(s)	220, 258
Mva1269I	GAATGC	1 cut(s)	294
MvnI	CGCG	5 cut(s)	163, 300, 318, 565, 567
MwoI	GCNNNNNNNGC	1 cut(s)	75
NciI	CCSGG	2 cut(s)	220, 258
NcoI	CCATGG	2 cut(s)	304, 550
NdeII	GATC	2 cut(s)	32, 494
NlaIII	CATG	5 cut(s)	12, 268, 308, 508, 554
NlaIV	GGNNCC	4 cut(s)	255, 262, 340, 349
NmuCI	GTSAC	2 cut(s)	11, 535
NsiI	ATGCAT	1 cut(s)	627
NspI	RCATGY	1 cut(s)	12
NspV	TTCGAA	1 cut(s)	360
PaeR7I	CTCGAG	1 cut(s)	73
PauI	GCGCGC	1 cut(s)	565
PcsI	WCGNNNNNNNCGW	2 cut(s)	80, 366
PctI	GAATGC	1 cut(s)	294
PkrI	GCNGC	4 cut(s)	112, 317, 320, 564
PleI	GAGTC	2 cut(s)	115, 395
PpsI	GAGTC	2 cut(s)	115, 395
PshBI	ATTAAT	1 cut(s)	411
PspN4I	GGNNCC	4 cut(s)	255, 262, 340, 349
PspPI	GGNCC	2 cut(s)	338, 438
PteI	GCGCGC	1 cut(s)	565
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
SacII	CCGCGG	1 cut(s)	319
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	4 cut(s)	111, 316, 319, 563
Sau3AI	GATC	2 cut(s)	32, 494
Sau96I	GGNCC	2 cut(s)	338, 438
SchI	GAGTC	2 cut(s)	115, 396
ScrFI	CCNGG	2 cut(s)	220, 258
SfaNI	GCATC	3 cut(s)	555, 601, 634
SfcI	CTRYAG	1 cut(s)	27
Sfr274I	CTCGAG	1 cut(s)	73
Sfr303I	CCGCGG	1 cut(s)	319
SfuI	TTCGAA	1 cut(s)	360
SgrBI	CCGCGG	1 cut(s)	319
SinI	GGWCC	1 cut(s)	438
SlaI	CTCGAG	1 cut(s)	73
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
Sse9I	AATT	2 cut(s)	412, 540
SsiI	CCGC	6 cut(s)	108, 111, 316, 318, 563, 588
SspMI	CTAG	2 cut(s)	533, 585
StyD4I	CCNGG	2 cut(s)	218, 256
StyI	CCWWGG	3 cut(s)	289, 304, 550
TaaI	ACNGT	3 cut(s)	24, 189, 352
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	4 cut(s)	45, 74, 191, 360
TasI	AATT	2 cut(s)	412, 540
TauI	GCSGC	4 cut(s)	113, 318, 321, 565
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	1 cut(s)	192
TseFI	GTSAC	2 cut(s)	11, 535
Tsp45I	GTSAC	2 cut(s)	11, 535
TspDTI	ATGAA	1 cut(s)	524
TspGWI	ACGGA	1 cut(s)	618
TspRI	CASTG	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	438
VspI	ATTAAT	1 cut(s)	411
XagI	CCTNNNNNAGG	1 cut(s)	46
XceI	RCATGY	1 cut(s)	12
XhoI	CTCGAG	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	26
XspI	CTAG	2 cut(s)	533, 585
Zsp2I	ATGCAT	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.