Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Forward (+)

6982818 .. 6983951

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g08080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCAATCGAAGTTTCGTTCGTTCGTGATTGAGAACCAAATCGTCGGTTACATTCACAGTTCCACCGGTATTAAAGCTGGAGTGGGAACCGATGAAAAGACAAAACATTCTGGGGATGGAACTTCATCAATGCTAAATGATCATGGAAGCAATAGAACGGCTTCTTCACATGCTACTCATACTGAGGGTTGTCGAAGTCTTGGAATCGGTTTTCTCTATAATTTGATTAGTGGGGGTGATGATCAAGTCCTTAGCTGTCTTACATTTGAATTATCAATGTCAACATCAAGCTCTGAATTTGATAATATGACATTGGAAATAAAAAATTCAATCTCCGAATTTGGATCTGCAAAGAAGTTAATTCATTCTAACCAAGACAAGAACTATTGGATCCGATTCTTAAATCATGATAAAGTCCCCTCAGCTCACAGCTCTGCCGTAAATGGTGTTTGGACAGACGGATCTTGGGTTTTTTCAACTGGTCTAGATCAGCGTGTCAGGTGCTGGCATCTCCAAGAAGATGCTACTGCTTGTGTTGACACATCTGATGATATCTCCAAGCCCCCTACTTCTGTGGCCGCCAATTTGAGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

199

Amino Acids

21.62

Weight (kDa)

6.11

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	579
AclWI	GGATC	4 cut(s)	352, 385, 398, 469
AcoI	YGGCCR	1 cut(s)	576
AcsI	RAATTY	3 cut(s)	296, 325, 338
AgeI	ACCGGT	1 cut(s)	65
AgsI	TTSAA	3 cut(s)	269, 330, 477
AluBI	AGCT	5 cut(s)	77, 255, 291, 425, 432
AluI	AGCT	5 cut(s)	77, 255, 291, 425, 432
AlwI	GGATC	4 cut(s)	352, 385, 398, 469
AlwNI	CAGNNNCTG	1 cut(s)	504
AoxI	GGCC	1 cut(s)	576
ApoI	RAATTY	3 cut(s)	296, 325, 338
AsiGI	ACCGGT	1 cut(s)	65
Asp700I	GAANNNNTTC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	248
BamHI	GGATCC	1 cut(s)	390
BbvCI	CCTCAGC	1 cut(s)	421
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	2 cut(s)	174, 422
BclI	TGATCA	2 cut(s)	139, 241
BfaI	CTAG	1 cut(s)	485
BisI	GCNGC	1 cut(s)	579
BlsI	GCNGC	1 cut(s)	580
BmiI	GGNNCC	2 cut(s)	88, 392
BmsI	GCATC	2 cut(s)	511, 517
BpmI	CTGGAG	1 cut(s)	99
Bpu10I	CCTNAGC	2 cut(s)	251, 421
BsaWI	WCCGGW	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	484
BseGI	GGATG	1 cut(s)	121
BseMII	CTCAG	2 cut(s)	174, 435
BseNI	ACTGG	1 cut(s)	484
BshFI	GGCC	1 cut(s)	578
BshTI	ACCGGT	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	1 cut(s)	578
Bsp143I	GATC	6 cut(s)	139, 241, 344, 390, 461, 487
BspACI	CCGC	1 cut(s)	579
BspANI	GGCC	1 cut(s)	578
BspCNI	CTCAG	2 cut(s)	175, 434
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	2 cut(s)	88, 392
BspPI	GGATC	4 cut(s)	352, 385, 398, 469
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	484
BssAI	RCCGGY	1 cut(s)	65
BssMI	GATC	6 cut(s)	139, 241, 344, 390, 461, 487
Bst4CI	ACNGT	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	506
BstDEI	CTNAG	3 cut(s)	183, 251, 421
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	6 cut(s)	142, 244, 347, 393, 464, 490
BstMBI	GATC	6 cut(s)	139, 241, 344, 390, 461, 487
BstNSI	RCATGY	1 cut(s)	173
BstX2I	RGATCY	3 cut(s)	344, 390, 461
BstYI	RGATCY	3 cut(s)	344, 390, 461
BsuRI	GGCC	1 cut(s)	578
BtsCI	GGATG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	506
CaiI	CAGNNNCTG	1 cut(s)	504
CciI	TCATGA	1 cut(s)	406
Cfr10I	RCCGGY	1 cut(s)	65
CspAI	ACCGGT	1 cut(s)	65
CviAII	CATG	3 cut(s)	143, 170, 407
CviJI	RGCY	8 cut(s)	77, 161, 255, 291, 425, 432, 562, 578
CviKI_1	RGCY	8 cut(s)	77, 161, 255, 291, 425, 432, 562, 578
DdeI	CTNAG	3 cut(s)	183, 251, 421
DpnI	GATC	6 cut(s)	141, 243, 346, 392, 463, 489
DpnII	GATC	6 cut(s)	139, 241, 344, 390, 461, 487
EaeI	YGGCCR	1 cut(s)	576
Eco32I	GATATC	1 cut(s)	553
EcoRV	GATATC	1 cut(s)	553
FaeI	CATG	3 cut(s)	146, 173, 410
FaiI	YATR	6 cut(s)	144, 171, 180, 219, 308, 408
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	3 cut(s)	142, 169, 406
FbaI	TGATCA	2 cut(s)	139, 241
Fnu4HI	GCNGC	1 cut(s)	579
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	579
FspBI	CTAG	1 cut(s)	485
GluI	GCNGC	1 cut(s)	579
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	578
HapII	CCGG	1 cut(s)	66
Hin1II	CATG	3 cut(s)	146, 173, 410
HincII	GTYRAC	2 cut(s)	282, 538
HindII	GTYRAC	2 cut(s)	282, 538
HinfI	GANTC	2 cut(s)	204, 396
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	2 cut(s)	282, 538
Hpy188I	TCNGA	4 cut(s)	295, 337, 395, 547
Hpy188III	TCNNGA	3 cut(s)	25, 407, 485
Hpy8I	GTNNAC	2 cut(s)	282, 538
Hpy99I	CGWCG	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	4, 350
HpyF3I	CTNAG	3 cut(s)	183, 251, 421
Hsp92II	CATG	3 cut(s)	146, 173, 410
Ksp22I	TGATCA	2 cut(s)	139, 241
Kzo9I	GATC	6 cut(s)	139, 241, 344, 390, 461, 487
LpnPI	CCDG	6 cut(s)	63, 79, 96, 465, 484, 490
LweI	GCATC	2 cut(s)	511, 517
MaeI	CTAG	1 cut(s)	485
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	6 cut(s)	141, 243, 346, 392, 463, 489
MboI	GATC	6 cut(s)	139, 241, 344, 390, 461, 487
MboII	GAAGA	2 cut(s)	156, 530
MflI	RGATCY	3 cut(s)	344, 390, 461
MluCI	AATT	7 cut(s)	220, 269, 296, 325, 338, 360, 583
MnlI	CCTC	2 cut(s)	178, 430
MroXI	GAANNNNTTC	1 cut(s)	160
MseI	TTAA	3 cut(s)	72, 359, 401
MspI	CCGG	1 cut(s)	66
NdeII	GATC	6 cut(s)	139, 241, 344, 390, 461, 487
NlaIII	CATG	3 cut(s)	146, 173, 410
NlaIV	GGNNCC	2 cut(s)	88, 392
NspI	RCATGY	1 cut(s)	173
PagI	TCATGA	1 cut(s)	406
PdmI	GAANNNNTTC	1 cut(s)	160
PfeI	GAWTC	2 cut(s)	204, 396
PinAI	ACCGGT	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	580
PspN4I	GGNNCC	2 cut(s)	88, 392
PstNI	CAGNNNCTG	1 cut(s)	504
PsuI	RGATCY	3 cut(s)	344, 390, 461
SaqAI	TTAA	3 cut(s)	72, 359, 401
SatI	GCNGC	1 cut(s)	579
Sau3AI	GATC	6 cut(s)	139, 241, 344, 390, 461, 487
SetI	ASST	6 cut(s)	79, 257, 293, 427, 434, 503
SfaNI	GCATC	2 cut(s)	511, 517
Sse9I	AATT	7 cut(s)	220, 269, 296, 325, 338, 360, 583
SsiI	CCGC	1 cut(s)	579
SspMI	CTAG	1 cut(s)	485
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	2 cut(s)	8, 193
TasI	AATT	7 cut(s)	220, 269, 296, 325, 338, 360, 583
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	2 cut(s)	204, 396
Tru1I	TTAA	3 cut(s)	72, 359, 401
Tru9I	TTAA	3 cut(s)	72, 359, 401
TspDTI	ATGAA	3 cut(s)	108, 114, 353
TspGWI	ACGGA	1 cut(s)	474
XapI	RAATTY	3 cut(s)	296, 325, 338
XbaI	TCTAGA	1 cut(s)	484
XceI	RCATGY	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	160
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.