Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Forward (+)

34096658 .. 34096989

Gene Structure 332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1281500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGAAACAAGTAAAAGAGTTGAGTCTTATTGAATCCGTTTCTGCTGGTAATAGCTCTGTTAATGAGTTGTCAACCAGTCATTGTGCTGCTGGTTTTGCATCAGTGGATTTTGTAATTTGGAATTTAATGACTGAAACCAAGGTTGTCCAAATTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

53

Amino Acids

5.6

Weight (kDa)

4.96

Isoelectric Point (pI)

25.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	121, 150
AgsI	TTSAA	1 cut(s)	32
AluBI	AGCT	1 cut(s)	54
AluI	AGCT	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	2 cut(s)	121, 150
BbvI	GCAGC	1 cut(s)	73
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
BmsI	GCATC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	138
Bse1I	ACTGG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	108
CviAII	CATG	1 cut(s)	156
CviJI	RGCY	1 cut(s)	54
CviKI_1	RGCY	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	1 cut(s)	159
FaiI	YATR	1 cut(s)	157
FatI	CATG	1 cut(s)	155
Fnu4HI	GCNGC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	87
FspEI	CC	8 cut(s)	30, 49, 75, 88, 89, 103, 125, 151
GluI	GCNGC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HinfI	GANTC	2 cut(s)	22, 32
Hpy166II	GTNNAC	1 cut(s)	72
Hpy8I	GTNNAC	1 cut(s)	72
HpyCH4V	TGCA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
Hsp92II	CATG	1 cut(s)	159
LpnPI	CCDG	3 cut(s)	30, 75, 88
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	1 cut(s)	107
MluCI	AATT	3 cut(s)	114, 121, 150
MlyI	GAGTC	1 cut(s)	31
MseI	TTAA	2 cut(s)	60, 125
MwoI	GCNNNNNNNGC	1 cut(s)	95
NlaIII	CATG	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	88
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
SaqAI	TTAA	2 cut(s)	60, 125
SatI	GCNGC	1 cut(s)	87
SchI	GAGTC	1 cut(s)	31
SetI	ASST	2 cut(s)	56, 144
SfaNI	GCATC	1 cut(s)	107
SgeI	CNNG	5 cut(s)	20, 57, 87, 102, 151
Sse9I	AATT	3 cut(s)	114, 121, 150
StyI	CCWWGG	1 cut(s)	138
TasI	AATT	3 cut(s)	114, 121, 150
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	2 cut(s)	60, 125
Tru9I	TTAA	2 cut(s)	60, 125
TscAI	CASTG	1 cut(s)	108
TseI	GCWGC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	108
XapI	RAATTY	2 cut(s)	121, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.