Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Forward (+)

34097537 .. 34098918

Gene Structure 1382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1281700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTCTAATGATTTACTTAGGTATACACCAGGTGTTGAAAATTGGTCTGCATCAAAATTACTTGGGGAGCAGGTTGGTGGATCAGCTGTGAGATCAATATGTTGTGCCTCAAAGTTATACATTGTTCCATCAGATACTGCCAACATAAATGGAAAAAATGCAGCAGCAGAGAACAGAGAAACTCCAGTTCTATTGATTTCTGTTGGTGCAAAGCGGGTCTTTACTTCTTGGCTACTAAGAAGTTATAAGGTAAACAAAAAGGATGAAACACTATCTGATCAGCGGCATAACATCACTGGAAATGGAAATAAAGTTTTGTTGCAAGAGTCAACTTCGATGTCATTCCAGTGGCGTTCAACAGATATGCCAGTCAAGTATTCTAGTAATCCTAAATTTCCAGAAAATGTAGGGAATGATTCTACTGCAGAAACCAATGCAGGATCTAGATTATTGTCTTCGGAAAAGGGAAATATCGAGTTGAAATCTTCACTTAAGGATAAATATGAAGATGACTGGAGATACCTTGCTGTCACTGCGTTTCTGGTCAAATGTGCTGGTTCCAGGATTACTGTCTGTTTTATTGTTGTCGCCTGCTCAGATGCCACCCTTGCATTGCGGGCTCTAGTTTTGCCCTATAGGCTATGGTTTGATGTTGCTGTATTGCTTCCGCTGGCATCACCAGTTTTGGCATTTCAGCATGTTATCCTTCCTACATGTGTCCCTTCTGAAGATAATATTCAGATGGGGAGTATGTATATTCTCATTAGTGGAGCTACTGATGGAAGTATTGCCTTTTGTGTCAGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

270

Amino Acids

29.36

Weight (kDa)

8.11

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	246
Acc36I	ACCTGC	1 cut(s)	61
AccI	GTMKAC	1 cut(s)	23
AciI	CCGC	4 cut(s)	214, 283, 616, 668
AclWI	GGATC	2 cut(s)	88, 448
AcsI	RAATTY	1 cut(s)	392
AcuI	CTGAAG	1 cut(s)	747
AdeI	CACNNNGTG	1 cut(s)	32
AfaI	GTAC	1 cut(s)	805
AflII	CTTAAG	1 cut(s)	491
AflIII	ACRYGT	1 cut(s)	713
AgsI	TTSAA	3 cut(s)	38, 357, 481
AjnI	CCWGG	2 cut(s)	28, 560
AluBI	AGCT	2 cut(s)	86, 773
AluI	AGCT	2 cut(s)	86, 773
AlwI	GGATC	2 cut(s)	88, 448
AlwNI	CAGNNNCTG	1 cut(s)	137
ApeKI	GCWGC	2 cut(s)	161, 164
ApoI	RAATTY	1 cut(s)	392
AsuHPI	GGTGA	1 cut(s)	669
BanII	GRGCYC	1 cut(s)	622
BbsI	GAAGAC	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	173, 176
BccI	CCATC	3 cut(s)	136, 736, 773
BciT130I	CCWGG	2 cut(s)	30, 562
BclI	TGATCA	1 cut(s)	277
BfaI	CTAG	3 cut(s)	381, 444, 623
BfmI	CTRYAG	2 cut(s)	423, 634
BfrI	CTTAAG	1 cut(s)	491
BfuAI	ACCTGC	1 cut(s)	61
BglI	GCCNNNNNGGC	1 cut(s)	637
BisI	GCNGC	3 cut(s)	162, 165, 284
BlsI	GCNGC	3 cut(s)	163, 166, 285
BmcAI	AGTACT	1 cut(s)	805
Bme1390I	CCNGG	2 cut(s)	30, 562
BmiI	GGNNCC	1 cut(s)	559
BmrFI	CCNGG	2 cut(s)	30, 562
BmsI	GCATC	3 cut(s)	59, 589, 683
BpiI	GAAGAC	1 cut(s)	447
BpmI	CTGGAG	2 cut(s)	168, 535
Bse1I	ACTGG	6 cut(s)	185, 301, 346, 368, 518, 680
Bse3DI	GCAATG	1 cut(s)	611
BseBI	CCWGG	2 cut(s)	30, 562
BseGI	GGATG	1 cut(s)	268
BseMI	GCAATG	1 cut(s)	611
BseMII	CTCAG	1 cut(s)	609
BseNI	ACTGG	6 cut(s)	185, 301, 346, 368, 518, 680
BseXI	GCAGC	2 cut(s)	173, 176
BslFI	GGGAC	1 cut(s)	704
BsmFI	GGGAC	1 cut(s)	704
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp143I	GATC	4 cut(s)	80, 92, 277, 440
BspACI	CCGC	4 cut(s)	214, 283, 616, 668
BspCNI	CTCAG	1 cut(s)	608
BspLI	GGNNCC	1 cut(s)	559
BspMAI	CTGCAG	1 cut(s)	427
BspMI	ACCTGC	1 cut(s)	61
BspPI	GGATC	2 cut(s)	88, 448
BspTI	CTTAAG	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	611
BsrI	ACTGG	6 cut(s)	185, 301, 346, 368, 518, 680
BssMI	GATC	4 cut(s)	80, 92, 277, 440
BssNAI	GTATAC	1 cut(s)	24
Bst1107I	GTATAC	1 cut(s)	24
Bst2UI	CCWGG	2 cut(s)	30, 562
Bst4CI	ACNGT	1 cut(s)	571
BstAFI	CTTAAG	1 cut(s)	491
BstC8I	GCNNGC	3 cut(s)	592, 618, 672
BstDEI	CTNAG	3 cut(s)	17, 236, 595
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	4 cut(s)	83, 95, 280, 443
BstMBI	GATC	4 cut(s)	80, 92, 277, 440
BstMWI	GCNNNNNNNGC	4 cut(s)	533, 608, 617, 637
BstNI	CCWGG	2 cut(s)	30, 562
BstNSI	RCATGY	2 cut(s)	701, 717
BstSCI	CCNGG	2 cut(s)	28, 560
BstSFI	CTRYAG	2 cut(s)	423, 634
BstV1I	GCAGC	2 cut(s)	173, 176
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BstZ17I	GTATAC	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	268
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	3 cut(s)	294, 353, 531
BveI	ACCTGC	1 cut(s)	61
Cac8I	GCNNGC	3 cut(s)	592, 618, 672
CaiI	CAGNNNCTG	1 cut(s)	137
CsiI	ACCWGGT	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	804
CviAII	CATG	2 cut(s)	698, 714
CviJI	RGCY	5 cut(s)	86, 232, 620, 640, 773
CviKI_1	RGCY	5 cut(s)	86, 232, 620, 640, 773
CviQI	GTAC	1 cut(s)	804
DdeI	CTNAG	3 cut(s)	17, 236, 595
DpnI	GATC	4 cut(s)	82, 94, 279, 442
DpnII	GATC	4 cut(s)	80, 92, 277, 440
DraIII	CACNNNGTG	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	622
Eco57I	CTGAAG	1 cut(s)	747
EcoRII	CCWGG	2 cut(s)	28, 560
EcoT38I	GRGCYC	1 cut(s)	622
FaeI	CATG	2 cut(s)	701, 717
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FaqI	GGGAC	1 cut(s)	704
FatI	CATG	2 cut(s)	697, 713
FauI	CCCGC	2 cut(s)	207, 609
FbaI	TGATCA	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	23
Fnu4HI	GCNGC	3 cut(s)	162, 165, 284
FokI	GGATG	1 cut(s)	275
FriOI	GRGCYC	1 cut(s)	622
Fsp4HI	GCNGC	3 cut(s)	162, 165, 284
FspBI	CTAG	3 cut(s)	381, 444, 623
GluI	GCNGC	3 cut(s)	162, 165, 284
GsuI	CTGGAG	2 cut(s)	168, 535
Hin1II	CATG	2 cut(s)	701, 717
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	2 cut(s)	326, 416
HphI	GGTGA	1 cut(s)	669
Hpy166II	GTNNAC	3 cut(s)	24, 253, 330
Hpy188I	TCNGA	6 cut(s)	133, 277, 460, 598, 727, 741
Hpy188III	TCNNGA	2 cut(s)	398, 444
Hpy8I	GTNNAC	3 cut(s)	24, 253, 330
HpyAV	CCTTC	2 cut(s)	716, 732
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4V	TGCA	7 cut(s)	50, 161, 209, 322, 425, 437, 611
HpyF10VI	GCNNNNNNNGC	4 cut(s)	533, 608, 617, 637
HpyF3I	CTNAG	3 cut(s)	17, 236, 595
Hsp92II	CATG	2 cut(s)	701, 717
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	4 cut(s)	80, 92, 277, 440
LmnI	GCTCC	2 cut(s)	67, 770
Lsp1109I	GCAGC	2 cut(s)	173, 176
LweI	GCATC	3 cut(s)	59, 589, 683
MabI	ACCWGGT	1 cut(s)	28
MaeI	CTAG	3 cut(s)	381, 444, 623
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	4 cut(s)	82, 94, 279, 442
MboI	GATC	4 cut(s)	80, 92, 277, 440
MboII	GAAGA	4 cut(s)	447, 477, 518, 740
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	1 cut(s)	622
MluCI	AATT	3 cut(s)	40, 56, 392
MlyI	GAGTC	1 cut(s)	335
MnlI	CCTC	1 cut(s)	118
MseI	TTAA	1 cut(s)	492
MslI	CAYNNNNRTG	1 cut(s)	346
MspA1I	CMGCKG	3 cut(s)	86, 283, 670
MspCI	CTTAAG	1 cut(s)	491
MspR9I	CCNGG	2 cut(s)	30, 562
MvaI	CCWGG	2 cut(s)	30, 562
MwoI	GCNNNNNNNGC	4 cut(s)	533, 608, 617, 637
NdeII	GATC	4 cut(s)	80, 92, 277, 440
NlaIII	CATG	2 cut(s)	701, 717
NlaIV	GGNNCC	1 cut(s)	559
NmuCI	GTSAC	1 cut(s)	529
NspI	RCATGY	2 cut(s)	701, 717
PciI	ACATGT	1 cut(s)	713
PfeI	GAWTC	1 cut(s)	416
PfoI	TCCNGGA	1 cut(s)	560
PkrI	GCNGC	3 cut(s)	163, 166, 285
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PscI	ACATGT	1 cut(s)	713
PsiI	TTATAA	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	28, 560
PspGI	CCWGG	2 cut(s)	28, 560
PspN4I	GGNNCC	1 cut(s)	559
PstI	CTGCAG	1 cut(s)	427
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	440
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	1 cut(s)	805
RsaNI	GTAC	1 cut(s)	804
RseI	CAYNNNNRTG	1 cut(s)	346
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	3 cut(s)	162, 165, 284
Sau3AI	GATC	4 cut(s)	80, 92, 277, 440
ScaI	AGTACT	1 cut(s)	805
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	2 cut(s)	30, 562
SduI	GDGCHC	1 cut(s)	622
SetI	ASST	7 cut(s)	23, 34, 75, 88, 252, 525, 775
SexAI	ACCWGGT	1 cut(s)	28
SfaNI	GCATC	3 cut(s)	59, 589, 683
SfcI	CTRYAG	2 cut(s)	423, 634
SmiMI	CAYNNNNRTG	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	3 cut(s)	40, 56, 392
SsiI	CCGC	4 cut(s)	214, 283, 616, 668
SspI	AATATT	1 cut(s)	736
SspMI	CTAG	3 cut(s)	381, 444, 623
StyD4I	CCNGG	2 cut(s)	28, 560
TaaI	ACNGT	1 cut(s)	571
TaqI	TCGA	2 cut(s)	335, 474
TasI	AATT	3 cut(s)	40, 56, 392
TatI	WGTACW	1 cut(s)	803
TauI	GCSGC	1 cut(s)	286
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	3 cut(s)	301, 353, 538
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	2 cut(s)	161, 164
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	2 cut(s)	279, 519
TspRI	CASTG	3 cut(s)	301, 353, 538
Vha464I	CTTAAG	1 cut(s)	491
XapI	RAATTY	1 cut(s)	392
XbaI	TCTAGA	1 cut(s)	443
XceI	RCATGY	2 cut(s)	701, 717
XmiI	GTMKAC	1 cut(s)	23
XspI	CTAG	3 cut(s)	381, 444, 623
ZrmI	AGTACT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.