Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Forward (+)

25873075 .. 25873491

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00237990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGGGTCCGCAAAGTGGTCAATATCCGGGAGAAGTGTCGCCCCGTGTTTCCTTCACCTACCTTCTCACCCGTCGATAAGGGAGCTTCCTTATTTAGTTGCCGGGTCGGGTTCGCAAATCTTGGTCTATGATTTGGAACCGGGAACCATGATGAGGTCGTTCGACGTTTTCCAAGGCATTCGCGTCCATGGGATTTGCTGCGGCGCTACTCATACCGATGGCCCCGAGGGAACCGTTGCTTTCGAAATCGCCGTGTTTGGGGAAAGGAGAGTCAAGGTGTTTAGATTGGAGATTAATTTGGGGCGCAAGTCGGTGTTGGTCCGAGGTCGTTGCACTTGTTGCCCAACTTTGGGAATTGGGTCTTGGATGTTTCCTTCATCAAGCATGGGAAGGTCGGTGTATTGCTATTGGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

138

Amino Acids

15.13

Weight (kDa)

8.98

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	183
AciI	CCGC	2 cut(s)	9, 201
AfiI	CCNNNNNNNGG	5 cut(s)	15, 153, 258, 349, 350
AjuI	GAANNNNNNNTTGG	2 cut(s)	346, 378
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	198
AseI	ATTAAT	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	206, 306
AspS9I	GGNCC	3 cut(s)	6, 221, 319
AsuC2I	CCSGG	3 cut(s)	28, 103, 141
AsuHPI	GGTGA	2 cut(s)	47, 59
AsuII	TTCGAA	1 cut(s)	243
AvaI	CYCGRG	1 cut(s)	224
AvaII	GGWCC	2 cut(s)	6, 319
BbvI	GCAGC	1 cut(s)	185
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	1 cut(s)	236
BcgI	CGANNNNNNTGC	2 cut(s)	312, 346
BcnI	CCSGG	3 cut(s)	28, 103, 141
BfoI	RGCGCY	1 cut(s)	207
BisI	GCNGC	2 cut(s)	199, 202
BlsI	GCNGC	2 cut(s)	200, 203
Bme1390I	CCNGG	3 cut(s)	28, 103, 141
Bme18I	GGWCC	2 cut(s)	6, 319
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	3 cut(s)	6, 221, 319
BmiI	GGNNCC	5 cut(s)	7, 138, 145, 223, 232
BmrFI	CCNGG	3 cut(s)	28, 103, 141
Bpu14I	TTCGAA	1 cut(s)	243
BpuMI	CCSGG	3 cut(s)	28, 103, 141
BsaJI	CCNNGG	4 cut(s)	172, 187, 225, 322
Bsc4I	CCNNNNNNNGG	5 cut(s)	15, 153, 258, 349, 350
BseDI	CCNNGG	4 cut(s)	172, 187, 225, 322
BseGI	GGATG	1 cut(s)	372
BseLI	CCNNNNNNNGG	5 cut(s)	15, 153, 258, 349, 350
BseXI	GCAGC	1 cut(s)	185
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	3 cut(s)	27, 102, 140
BslI	CCNNNNNNNGG	5 cut(s)	15, 153, 258, 349, 350
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	222
BsoBI	CYCGRG	1 cut(s)	224
Bsp119I	TTCGAA	1 cut(s)	243
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	2 cut(s)	9, 201
BspANI	GGCC	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	5 cut(s)	7, 138, 145, 223, 232
BspT104I	TTCGAA	1 cut(s)	243
BssECI	CCNNGG	4 cut(s)	172, 187, 225, 322
BssT1I	CCWWGG	2 cut(s)	172, 187
Bst4CI	ACNGT	1 cut(s)	235
BstAPI	GCANNNNNTGC	1 cut(s)	339
BstBI	TTCGAA	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	372
BstFNI	CGCG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	2 cut(s)	206, 306
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstSCI	CCNGG	3 cut(s)	26, 101, 139
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	222
BtgI	CCRYGG	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	372
CfoI	GCGC	2 cut(s)	206, 306
Cfr13I	GGNCC	3 cut(s)	6, 221, 319
CseI	GACGC	1 cut(s)	172
CviAII	CATG	3 cut(s)	148, 188, 385
CviJI	RGCY	2 cut(s)	85, 222
CviKI_1	RGCY	2 cut(s)	85, 222
Eco130I	CCWWGG	2 cut(s)	172, 187
Eco47I	GGWCC	2 cut(s)	6, 319
Eco88I	CYCGRG	1 cut(s)	224
EcoT14I	CCWWGG	2 cut(s)	172, 187
ErhI	CCWWGG	2 cut(s)	172, 187
FaeI	CATG	3 cut(s)	151, 191, 388
FaiI	YATR	5 cut(s)	129, 149, 189, 213, 386
FatI	CATG	3 cut(s)	147, 187, 384
Fnu4HI	GCNGC	2 cut(s)	199, 202
FokI	GGATG	1 cut(s)	379
Fsp4HI	GCNGC	2 cut(s)	199, 202
GlaI	GCGC	2 cut(s)	205, 305
GluI	GCNGC	2 cut(s)	199, 202
HaeII	RGCGCY	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	3 cut(s)	27, 102, 140
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	2 cut(s)	206, 306
Hin1II	CATG	3 cut(s)	151, 191, 388
Hin6I	GCGC	2 cut(s)	204, 304
HinP1I	GCGC	2 cut(s)	204, 304
HinfI	GANTC	1 cut(s)	270
HpaII	CCGG	3 cut(s)	27, 102, 140
HphI	GGTGA	2 cut(s)	47, 59
Hpy188I	TCNGA	1 cut(s)	323
Hpy99I	CGWCG	2 cut(s)	76, 167
HpyAV	CCTTC	4 cut(s)	62, 72, 384, 384
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	1 cut(s)	333
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	3 cut(s)	151, 191, 388
HspAI	GCGC	2 cut(s)	204, 304
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	3 cut(s)	40, 115, 153
Lsp1109I	GCAGC	1 cut(s)	185
MaeII	ACGT	1 cut(s)	165
MluCI	AATT	2 cut(s)	295, 354
MlyI	GAGTC	1 cut(s)	279
MnlI	CCTC	3 cut(s)	147, 220, 317
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	3 cut(s)	27, 102, 140
MspR9I	CCNGG	3 cut(s)	28, 103, 141
Mva1269I	GAATGC	1 cut(s)	177
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	339
NciI	CCSGG	3 cut(s)	28, 103, 141
NcoI	CCATGG	1 cut(s)	187
NlaIII	CATG	3 cut(s)	151, 191, 388
NlaIV	GGNNCC	5 cut(s)	7, 138, 145, 223, 232
NspV	TTCGAA	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PctI	GAATGC	1 cut(s)	177
PfoI	TCCNGGA	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	200, 203
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
PshBI	ATTAAT	1 cut(s)	294
PspN4I	GGNNCC	5 cut(s)	7, 138, 145, 223, 232
PspPI	GGNCC	3 cut(s)	6, 221, 319
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	2 cut(s)	199, 202
Sau96I	GGNCC	3 cut(s)	6, 221, 319
SchI	GAGTC	1 cut(s)	279
ScrFI	CCNGG	3 cut(s)	28, 103, 141
SetI	ASST	8 cut(s)	60, 64, 87, 158, 168, 279, 328, 395
SfuI	TTCGAA	1 cut(s)	243
SinI	GGWCC	2 cut(s)	6, 319
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	2 cut(s)	295, 354
SsiI	CCGC	2 cut(s)	9, 201
StyD4I	CCNGG	3 cut(s)	26, 101, 139
StyI	CCWWGG	2 cut(s)	172, 187
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	3 cut(s)	74, 162, 243
TasI	AATT	2 cut(s)	295, 354
TauI	GCSGC	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TseI	GCWGC	1 cut(s)	198
TspDTI	ATGAA	1 cut(s)	366
VpaK11BI	GGWCC	2 cut(s)	6, 319
VspI	ATTAAT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.