Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001857.1

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Forward (+)

14813 .. 16994

Gene Structure 2182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001857.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

atgactggcattcccaatataagaactgctaacaatggaacaacagagaatatagagactccgactttgttgatttctgttggtgcaaagcgggtcttgacttcttggctactaagaagtaggaaagtagacaagaaggaagaagtagtatgtgatccgcagcatgacaacactggaaatggcaatacatgttcgtccccagagtcgccttcaatgtcattccagtggctttctacagatatgccagcaaaatattctagtattcaaaaagttccaacaaacatcaagaaaagagctgatcaagctggcgatgctgatggtaaagatgatgcagcatcagaaaagggaaacaaagagtcgaactcctgcattaaagataaacatgaagatgactggagatacatggctgttactgcttttcttctaaagtgtgccaattccaggataactgtctgttttattggtgtcgcttgttctgatgccacccttgcattacgggctctggttttgccctataggctatggtttgatgttgcttttctctgtcctctatcatcaccagttctgtccctacagcatgtcatccttcctgcatgtctaccttctgaagaaacggccgagaacagggaggggaagtcagggtggacgatggtggagatcttgaggcagtgcatgtcaacgagtaggctaggtgccagttccaccactgttaaagctggagtggaaactgatgagaatttgccaaagcattctggggatggaacttcatcaacgctaaatgataatgggagcactagaacggcttcttcacatgccattcatactgcttccctagattcagaagcaagtgcttatgattcctcatcggacatatgtgaaatattaccattacttgtcttcaaggccgttcacaaatctggtgtcaattctgtccacagttcaaatgtagagggttgtctatgtcctgaaatcggttttctctataatttaattagtgggggtgatgatcaagcccttagctgtcttacatttgaattgtcagtgtcaacatttagttctgaatttgataatatgacactggaaatcaaaaattcaatcactgaacttggaaatgcaaagaagttagttcattctaaccaagacaagaagaagaactattggatccgattcttaaatcatgataaagtcccctcagctcacagctctgccgtaaaaggtaaaggcatatattcaatcctaatttcacaatgccgtctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

419

Amino Acids

45.51

Weight (kDa)

6.14

Isoelectric Point (pI)

52.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	692
AccI	GTMKAC	2 cut(s)	129, 598
AciI	CCGC	2 cut(s)	91, 158
AclWI	GGATC	3 cut(s)	149, 1156, 1169
AcoI	YGGCCR	1 cut(s)	615
AcsI	RAATTY	3 cut(s)	736, 1061, 1090
AcuI	CTGAAG	1 cut(s)	627
AfiI	CCNNNNNNNGG	3 cut(s)	441, 624, 971
AflIII	ACRYGT	1 cut(s)	188
AgsI	TTSAA	7 cut(s)	213, 266, 901, 942, 1034, 1095, 1233
AjnI	CCWGG	1 cut(s)	440
AluBI	AGCT	6 cut(s)	296, 305, 716, 1020, 1196, 1203
AluI	AGCT	6 cut(s)	296, 305, 716, 1020, 1196, 1203
Alw21I	GWGCWC	1 cut(s)	794
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	3 cut(s)	149, 1156, 1169
AoxI	GGCC	2 cut(s)	615, 903
ApeKI	GCWGC	2 cut(s)	160, 332
ApoI	RAATTY	3 cut(s)	736, 1061, 1090
ArsI	GACNNNNNNTTYG	4 cut(s)	49, 81, 906, 938
Asp700I	GAANNNNTTC	1 cut(s)	802
AsuHPI	GGTGA	2 cut(s)	549, 1013
BamHI	GGATCC	1 cut(s)	1161
BanI	GGYRCC	1 cut(s)	692
BanII	GRGCYC	1 cut(s)	502
BbsI	GAAGAC	1 cut(s)	889
Bbv12I	GWGCWC	1 cut(s)	794
BbvCI	CCTCAGC	1 cut(s)	1192
BbvI	GCAGC	2 cut(s)	172, 344
BccI	CCATC	3 cut(s)	311, 643, 752
BceAI	ACGGC	5 cut(s)	630, 816, 890, 1193, 1236
BciT130I	CCWGG	1 cut(s)	442
BclI	TGATCA	2 cut(s)	298, 1006
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	4 cut(s)	258, 689, 795, 833
BfmI	CTRYAG	3 cut(s)	234, 514, 572
BglI	GCCNNNNNGGC	1 cut(s)	517
BglII	AGATCT	1 cut(s)	657
BisI	GCNGC	2 cut(s)	161, 333
BlsI	GCNGC	2 cut(s)	162, 334
Bme1390I	CCNGG	1 cut(s)	442
BmiI	GGNNCC	2 cut(s)	694, 1163
BmrFI	CCNGG	1 cut(s)	442
BmsI	GCATC	4 cut(s)	301, 319, 344, 469
BpiI	GAAGAC	1 cut(s)	889
BplI	GAGNNNNNCTC	2 cut(s)	347, 379
BpmI	CTGGAG	2 cut(s)	415, 738
Bpu10I	CCTNAGC	2 cut(s)	1016, 1192
BpuEI	CTTGAG	1 cut(s)	682
BsaXI	ACNNNNNCTCC	2 cut(s)	620, 650
Bsc4I	CCNNNNNNNGG	3 cut(s)	441, 624, 971
Bse1I	ACTGG	7 cut(s)	10, 178, 223, 398, 560, 696, 1083
BseBI	CCWGG	1 cut(s)	442
BseGI	GGATG	2 cut(s)	582, 763
BseLI	CCNNNNNNNGG	3 cut(s)	441, 624, 971
BseMII	CTCAG	1 cut(s)	1206
BseNI	ACTGG	7 cut(s)	10, 178, 223, 398, 560, 696, 1083
BseX3I	CGGCCG	1 cut(s)	615
BseXI	GCAGC	2 cut(s)	172, 344
Bsh1285I	CGRYCG	1 cut(s)	618
BshFI	GGCC	2 cut(s)	617, 905
BshNI	GGYRCC	1 cut(s)	692
BsiEI	CGRYCG	1 cut(s)	618
BsiHKAI	GWGCWC	1 cut(s)	794
BslFI	GGGAC	3 cut(s)	181, 553, 1172
BslI	CCNNNNNNNGG	3 cut(s)	441, 624, 971
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	3 cut(s)	181, 553, 1172
BsmI	GAATGC	2 cut(s)	9, 748
BsnI	GGCC	2 cut(s)	617, 905
Bsp1286I	GDGCHC	2 cut(s)	502, 794
Bsp143I	GATC	5 cut(s)	154, 298, 657, 1006, 1161
BspACI	CCGC	2 cut(s)	91, 158
BspANI	GGCC	2 cut(s)	617, 905
BspCNI	CTCAG	1 cut(s)	1205
BspHI	TCATGA	1 cut(s)	1177
BspLI	GGNNCC	2 cut(s)	694, 1163
BspPI	GGATC	3 cut(s)	149, 1156, 1169
BspT107I	GGYRCC	1 cut(s)	692
BsrI	ACTGG	7 cut(s)	10, 178, 223, 398, 560, 696, 1083
BssMI	GATC	5 cut(s)	154, 298, 657, 1006, 1161
Bst2UI	CCWGG	1 cut(s)	442
Bst4CI	ACNGT	3 cut(s)	451, 709, 938
BstC8I	GCNNGC	2 cut(s)	246, 307
BstDEI	CTNAG	3 cut(s)	113, 1016, 1192
BstF5I	GGATG	2 cut(s)	582, 763
BstKTI	GATC	5 cut(s)	157, 301, 660, 1009, 1164
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	5 cut(s)	154, 298, 657, 1006, 1161
BstMCI	CGRYCG	1 cut(s)	618
BstMWI	GCNNNNNNNGC	6 cut(s)	302, 311, 413, 488, 497, 517
BstNI	CCWGG	1 cut(s)	442
BstNSI	RCATGY	5 cut(s)	192, 581, 597, 676, 815
BstSCI	CCNGG	1 cut(s)	440
BstSFI	CTRYAG	3 cut(s)	234, 514, 572
BstV1I	GCAGC	2 cut(s)	172, 344
BstV2I	GAAGAC	1 cut(s)	889
BstX2I	RGATCY	2 cut(s)	657, 1161
BstYI	RGATCY	2 cut(s)	657, 1161
BstZI	CGGCCG	1 cut(s)	615
BsuRI	GGCC	2 cut(s)	617, 905
BtgZI	GCGATG	1 cut(s)	324
BtsCI	GGATG	2 cut(s)	582, 763
BtsI	GCAGTG	1 cut(s)	674
BtsIMutI	CAGTG	7 cut(s)	171, 230, 674, 705, 1047, 1076, 1098
Cac8I	GCNNGC	2 cut(s)	246, 307
CciI	TCATGA	1 cut(s)	1177
CviAII	CATG	9 cut(s)	164, 189, 383, 403, 578, 594, 673, 812, 1178
DdeI	CTNAG	3 cut(s)	113, 1016, 1192
DpnI	GATC	5 cut(s)	156, 300, 659, 1008, 1163
DpnII	GATC	5 cut(s)	154, 298, 657, 1006, 1161
EaeI	YGGCCR	1 cut(s)	615
EagI	CGGCCG	1 cut(s)	615
EclXI	CGGCCG	1 cut(s)	615
Eco24I	GRGCYC	1 cut(s)	502
Eco52I	CGGCCG	1 cut(s)	615
Eco57I	CTGAAG	1 cut(s)	627
EcoRII	CCWGG	1 cut(s)	440
EcoT38I	GRGCYC	1 cut(s)	502
FaeI	CATG	9 cut(s)	167, 192, 386, 406, 581, 597, 676, 815, 1181
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	3 cut(s)	181, 553, 1172
FatI	CATG	9 cut(s)	163, 188, 382, 402, 577, 593, 672, 811, 1177
FauI	CCCGC	1 cut(s)	84
FauNDI	CATATG	1 cut(s)	872
FbaI	TGATCA	2 cut(s)	298, 1006
FblI	GTMKAC	2 cut(s)	129, 598
Fnu4HI	GCNGC	2 cut(s)	161, 333
FokI	GGATG	2 cut(s)	569, 770
FriOI	GRGCYC	1 cut(s)	502
Fsp4HI	GCNGC	2 cut(s)	161, 333
FspBI	CTAG	4 cut(s)	258, 689, 795, 833
GluI	GCNGC	2 cut(s)	161, 333
GsuI	CTGGAG	2 cut(s)	415, 738
HaeIII	GGCC	2 cut(s)	617, 905
Hin1II	CATG	9 cut(s)	167, 192, 386, 406, 581, 597, 676, 815, 1181
HincII	GTYRAC	2 cut(s)	678, 1047
HindII	GTYRAC	2 cut(s)	678, 1047
HinfI	GANTC	6 cut(s)	58, 203, 356, 836, 857, 1167
HphI	GGTGA	2 cut(s)	549, 1013
Hpy166II	GTNNAC	7 cut(s)	130, 599, 645, 678, 910, 934, 1047
Hpy188I	TCNGA	8 cut(s)	63, 340, 478, 607, 841, 868, 1060, 1166
Hpy188III	TCNNGA	5 cut(s)	97, 286, 661, 965, 1178
Hpy8I	GTNNAC	7 cut(s)	130, 599, 645, 678, 910, 934, 1047
HpyAV	CCTTC	4 cut(s)	130, 219, 596, 612
HpyCH4III	ACNGT	3 cut(s)	451, 709, 938
HpyCH4V	TGCA	7 cut(s)	86, 332, 369, 491, 593, 672, 1115
HpyF10VI	GCNNNNNNNGC	6 cut(s)	302, 311, 413, 488, 497, 517
HpyF3I	CTNAG	3 cut(s)	113, 1016, 1192
Hsp92II	CATG	9 cut(s)	167, 192, 386, 406, 581, 597, 676, 815, 1181
Ksp22I	TGATCA	2 cut(s)	298, 1006
Kzo9I	GATC	5 cut(s)	154, 298, 657, 1006, 1161
LmnI	GCTCC	1 cut(s)	789
Lsp1109I	GCAGC	2 cut(s)	172, 344
LweI	GCATC	4 cut(s)	301, 319, 344, 469
MaeI	CTAG	4 cut(s)	258, 689, 795, 833
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	5 cut(s)	156, 300, 659, 1008, 1163
MboI	GATC	5 cut(s)	154, 298, 657, 1006, 1161
MboII	GAAGA	8 cut(s)	152, 398, 413, 620, 798, 889, 1159, 1162
MflI	RGATCY	2 cut(s)	657, 1161
MhlI	GDGCHC	2 cut(s)	502, 794
MluCI	AATT	9 cut(s)	436, 736, 925, 985, 990, 1034, 1061, 1090, 1239
MlyI	GAGTC	3 cut(s)	52, 212, 365
MmeI	TCCRAC	2 cut(s)	86, 299
MnlI	CCTC	6 cut(s)	558, 622, 657, 871, 943, 1201
MroXI	GAANNNNTTC	1 cut(s)	802
MseI	TTAA	4 cut(s)	372, 711, 989, 1172
MslI	CAYNNNNRTG	2 cut(s)	223, 387
MspR9I	CCNGG	1 cut(s)	442
Mva1269I	GAATGC	2 cut(s)	9, 748
MvaI	CCWGG	1 cut(s)	442
MwoI	GCNNNNNNNGC	6 cut(s)	302, 311, 413, 488, 497, 517
NdeI	CATATG	1 cut(s)	872
NdeII	GATC	5 cut(s)	154, 298, 657, 1006, 1161
NlaIII	CATG	9 cut(s)	167, 192, 386, 406, 581, 597, 676, 815, 1181
NlaIV	GGNNCC	2 cut(s)	694, 1163
NmeAIII	GCCGAG	1 cut(s)	643
NspI	RCATGY	5 cut(s)	192, 581, 597, 676, 815
PagI	TCATGA	1 cut(s)	1177
PciI	ACATGT	1 cut(s)	188
PctI	GAATGC	2 cut(s)	9, 748
PdmI	GAANNNNTTC	1 cut(s)	802
PfeI	GAWTC	3 cut(s)	836, 857, 1167
PfoI	TCCNGGA	1 cut(s)	440
PkrI	GCNGC	2 cut(s)	162, 334
PleI	GAGTC	3 cut(s)	52, 211, 364
PpsI	GAGTC	3 cut(s)	52, 211, 364
PscI	ACATGT	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	440
PspN4I	GGNNCC	2 cut(s)	694, 1163
PsuI	RGATCY	2 cut(s)	657, 1161
RseI	CAYNNNNRTG	2 cut(s)	223, 387
SaqAI	TTAA	4 cut(s)	372, 711, 989, 1172
SatI	GCNGC	2 cut(s)	161, 333
Sau3AI	GATC	5 cut(s)	154, 298, 657, 1006, 1161
SchI	GAGTC	3 cut(s)	52, 212, 365
ScrFI	CCNGG	1 cut(s)	442
SduI	GDGCHC	2 cut(s)	502, 794
SetI	ASST	9 cut(s)	298, 307, 604, 694, 718, 1022, 1198, 1205, 1219
SfaNI	GCATC	4 cut(s)	301, 319, 344, 469
SfcI	CTRYAG	3 cut(s)	234, 514, 572
SmiMI	CAYNNNNRTG	2 cut(s)	223, 387
SmlI	CTYRAG	1 cut(s)	661
SmoI	CTYRAG	1 cut(s)	661
Sse9I	AATT	9 cut(s)	436, 736, 925, 985, 990, 1034, 1061, 1090, 1239
SsiI	CCGC	2 cut(s)	91, 158
SspI	AATATT	2 cut(s)	254, 882
SspMI	CTAG	4 cut(s)	258, 689, 795, 833
StyD4I	CCNGG	1 cut(s)	440
TaaI	ACNGT	3 cut(s)	451, 709, 938
TaqI	TCGA	1 cut(s)	359
TasI	AATT	9 cut(s)	436, 736, 925, 985, 990, 1034, 1061, 1090, 1239
TfiI	GAWTC	3 cut(s)	836, 857, 1167
Tru1I	TTAA	4 cut(s)	372, 711, 989, 1172
Tru9I	TTAA	4 cut(s)	372, 711, 989, 1172
TscAI	CASTG	7 cut(s)	178, 230, 674, 712, 1047, 1083, 1105
TseI	GCWGC	2 cut(s)	160, 332
TspDTI	ATGAA	4 cut(s)	399, 756, 809, 1118
TspRI	CASTG	7 cut(s)	178, 230, 674, 712, 1047, 1083, 1105
XapI	RAATTY	3 cut(s)	736, 1061, 1090
XceI	RCATGY	5 cut(s)	192, 581, 597, 676, 815
XmiI	GTMKAC	2 cut(s)	129, 598
XmnI	GAANNNNTTC	1 cut(s)	802
XspI	CTAG	4 cut(s)	258, 689, 795, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.