Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Reverse (-)

20626900 .. 20628826

Gene Structure 1927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0224900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGGTTCCCAACCTCACGTTGTAGATGACCTCGGTGGCATTCTCCATATCTTCAGCGACGGTTCTATCTGGCGTCGCCCTTTCAAAGACATAAACTTCGGCCCTATTCGATTCATCGATGACAGTTCCGTCATCTTCAAAGACATTACTTACGATCAAAACCTCAACCTCTCCCTCCGTTTATACAAACCAAGACTAACAAACCCTACTTCCTCAGCTGCTAAGCTCCCGGTGGTGCTCTACTTTCACGGCGGCGGTTTTTGCGTCGGCTCACGTGTCTGGCCCCACTACCGCAACGTATGTGTCCGATTGGCAGCCGAACTCAAGGCCCTTGTGGTGTCACCGGACCACCGGCTTGCGCCGGAGCATAAGCTCCCTGCTGCGCTGGACGATGCGGCGTGTGTGGTGGATTGGCTGCAAAGGGAGGCCTTGATGAGTGAGAGTGGTGGTGACTGTGATGCATGGATACGTGGTGGTGTCGTTGACTTTGATAGGGTTTTTATCGTGGGTGATTCTTCCGGTGGCACCATAGCTCATCACCTGGCGGTTTCGCTAGGAGGCGGATCAGTCAAGGCGGCGCCGCTTCGGGTACGGGGGTACGTGTTGGTGGCGCCATTTTTTGGTGGAGTGGAGTGGACAAAATCAGAGCAGGAGCCTCATGAGCCACGGCTGACATTGGATGTAGTTGAAAGACTTTGGAGGCTTTCCCTGCCAGAAGGAGCAACCAGGGATCATCCGCTGGCAAACCCATTTGGACCAAACAGTCCACGCCTTGAGACGGTGGATCTTGATCCCATCTTGGTTATTGTGGGTGGCGATGAAATGTTGAAAGATAGATCGGTGATGTACTGGAGTAAACTAAAAGAATTGGGAAAGAAAATTGAATATGCGGAATTTGATGGAGAGCAACATGGGTTTTTCTCAATTAATCCATACTCAGATGTTGCAAATGAAGCATTCCACGTTGTTAAGAGATTTGTGAATGAAAACTCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

332

Amino Acids

36.86

Weight (kDa)

5.84

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	68 - 183	3.6e-10	BD-FAE
Abhydrolase_3	PF07859	79 - 307	2.1e-53	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	128, 762
AccB1I	GGYRCC	3 cut(s)	524, 577, 610
AccB7I	CCANNNNNTGG	1 cut(s)	620
AclWI	GGATC	4 cut(s)	571, 738, 785, 792
AcsI	RAATTY	1 cut(s)	893
AcuI	CTGAAG	1 cut(s)	37
AcvI	CACGTG	1 cut(s)	275
AcyI	GRCGYC	3 cut(s)	73, 578, 611
AfaI	GTAC	3 cut(s)	591, 599, 848
AfiI	CCNNNNNNNGG	2 cut(s)	620, 778
AflIII	ACRYGT	2 cut(s)	274, 600
AgsI	TTSAA	5 cut(s)	85, 139, 689, 829, 884
AjnI	CCWGG	2 cut(s)	540, 725
AluBI	AGCT	4 cut(s)	218, 226, 373, 533
AluI	AGCT	4 cut(s)	218, 226, 373, 533
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	770
AlwI	GGATC	4 cut(s)	571, 738, 785, 792
AoxI	GGCC	4 cut(s)	100, 281, 327, 426
ApeKI	GCWGC	4 cut(s)	218, 314, 380, 415
ApoI	RAATTY	1 cut(s)	893
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AseI	ATTAAT	1 cut(s)	927
AspLEI	GCGC	4 cut(s)	361, 385, 580, 613
AspS9I	GGNCC	5 cut(s)	101, 282, 328, 346, 755
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	5 cut(s)	333, 461, 521, 530, 853
AvaII	GGWCC	2 cut(s)	346, 755
BaeI	ACNNNNGTAYC	2 cut(s)	581, 614
BanI	GGYRCC	3 cut(s)	524, 577, 610
BbrPI	CACGTG	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	240
BbvCI	CCTCAGC	1 cut(s)	214
BbvI	GCAGC	4 cut(s)	205, 326, 367, 402
BccI	CCATC	2 cut(s)	803, 893
BceAI	ACGGC	2 cut(s)	265, 683
BciT130I	CCWGG	2 cut(s)	542, 727
BciVI	GTATCC	1 cut(s)	459
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	770
BfaI	CTAG	1 cut(s)	554
BfoI	RGCGCY	2 cut(s)	581, 614
BfuI	GTATCC	1 cut(s)	459
BisI	GCNGC	8 cut(s)	219, 253, 315, 381, 396, 416, 576, 581
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	8 cut(s)	220, 254, 316, 382, 397, 417, 577, 582
Bme1390I	CCNGG	3 cut(s)	230, 542, 727
Bme18I	GGWCC	2 cut(s)	346, 755
BmgT120I	GGNCC	5 cut(s)	101, 282, 328, 346, 755
BmiI	GGNNCC	6 cut(s)	7, 284, 526, 579, 612, 654
BmrFI	CCNGG	3 cut(s)	230, 542, 727
BmsI	GCATC	2 cut(s)	382, 448
BpmI	CTGGAG	1 cut(s)	871
Bpu10I	CCTNAGC	1 cut(s)	214
Bpu1102I	GCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	2 cut(s)	308, 794
BpuMI	CCSGG	1 cut(s)	230
Bsa29I	ATCGAT	1 cut(s)	117
BsaAI	YACGTR	3 cut(s)	275, 470, 601
BsaBI	GATNNNNATC	1 cut(s)	789
BsaHI	GRCGYC	3 cut(s)	73, 578, 611
BsaJI	CCNNGG	3 cut(s)	31, 665, 726
BsaWI	WCCGGW	2 cut(s)	343, 518
Bsc4I	CCNNNNNNNGG	2 cut(s)	620, 778
Bse118I	RCCGGY	1 cut(s)	351
Bse1I	ACTGG	1 cut(s)	854
Bse8I	GATNNNNATC	1 cut(s)	789
BseBI	CCWGG	2 cut(s)	542, 727
BseCI	ATCGAT	1 cut(s)	117
BseDI	CCNNGG	3 cut(s)	31, 665, 726
BseGI	GGATG	2 cut(s)	685, 733
BseJI	GATNNNNATC	1 cut(s)	789
BseLI	CCNNNNNNNGG	2 cut(s)	620, 778
BseMII	CTCAG	2 cut(s)	228, 951
BseNI	ACTGG	1 cut(s)	854
BseXI	GCAGC	4 cut(s)	205, 326, 367, 402
BshFI	GGCC	4 cut(s)	102, 283, 329, 428
BshNI	GGYRCC	3 cut(s)	524, 577, 610
BshVI	ATCGAT	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	240
BsiSI	CCGG	5 cut(s)	230, 344, 352, 362, 519
BslI	CCNNNNNNNGG	2 cut(s)	620, 778
BsmAI	GTCTC	1 cut(s)	770
BsmBI	CGTCTC	1 cut(s)	770
BsmI	GAATGC	2 cut(s)	39, 956
BsnI	GGCC	4 cut(s)	102, 283, 329, 428
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	6 cut(s)	154, 563, 730, 784, 790, 836
Bsp1720I	GCTNAGC	1 cut(s)	222
BspANI	GGCC	4 cut(s)	102, 283, 329, 428
BspCNI	CTCAG	2 cut(s)	227, 950
BspDI	ATCGAT	1 cut(s)	117
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	6 cut(s)	7, 284, 526, 579, 612, 654
BspPI	GGATC	4 cut(s)	571, 738, 785, 792
BspT107I	GGYRCC	3 cut(s)	524, 577, 610
BsrFI	RCCGGY	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	854
BssAI	RCCGGY	1 cut(s)	351
BssECI	CCNNGG	3 cut(s)	31, 665, 726
BssMI	GATC	6 cut(s)	154, 563, 730, 784, 790, 836
BssNI	GRCGYC	3 cut(s)	73, 578, 611
Bst2UI	CCWGG	2 cut(s)	542, 727
Bst4CI	ACNGT	5 cut(s)	62, 125, 455, 764, 781
BstACI	GRCGYC	3 cut(s)	73, 578, 611
BstBAI	YACGTR	3 cut(s)	275, 470, 601
BstC8I	GCNNGC	2 cut(s)	357, 741
BstDEI	CTNAG	3 cut(s)	214, 222, 937
BstDSI	CCRYGG	1 cut(s)	665
BstF5I	GGATG	2 cut(s)	685, 733
BstH2I	RGCGCY	2 cut(s)	581, 614
BstHHI	GCGC	4 cut(s)	361, 385, 580, 613
BstKTI	GATC	6 cut(s)	157, 566, 733, 787, 793, 839
BstMAI	GTCTC	1 cut(s)	770
BstMBI	GATC	6 cut(s)	154, 563, 730, 784, 790, 836
BstMWI	GCNNNNNNNGC	4 cut(s)	261, 661, 709, 953
BstNI	CCWGG	2 cut(s)	542, 727
BstSCI	CCNGG	3 cut(s)	228, 540, 725
BstV1I	GCAGC	4 cut(s)	205, 326, 367, 402
BstX2I	RGATCY	1 cut(s)	784
BstYI	RGATCY	1 cut(s)	784
Bsu15I	ATCGAT	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	459
BsuRI	GGCC	4 cut(s)	102, 283, 329, 428
BsuTUI	ATCGAT	1 cut(s)	117
BtgI	CCRYGG	1 cut(s)	665
BtgZI	GCGATG	1 cut(s)	831
BtsCI	GGATG	2 cut(s)	685, 733
Cac8I	GCNNGC	2 cut(s)	357, 741
CciI	TCATGA	1 cut(s)	658
CfoI	GCGC	4 cut(s)	361, 385, 580, 613
Cfr10I	RCCGGY	1 cut(s)	351
Cfr13I	GGNCC	5 cut(s)	101, 282, 328, 346, 755
ClaI	ATCGAT	1 cut(s)	117
CseI	GACGC	2 cut(s)	62, 253
Csp6I	GTAC	3 cut(s)	590, 598, 847
CviAII	CATG	3 cut(s)	462, 659, 911
CviQI	GTAC	3 cut(s)	590, 598, 847
DdeI	CTNAG	3 cut(s)	214, 222, 937
DinI	GGCGCC	2 cut(s)	579, 612
DpnI	GATC	6 cut(s)	156, 565, 732, 786, 792, 838
DpnII	GATC	6 cut(s)	154, 563, 730, 784, 790, 836
DrdI	GACNNNNNNGTC	2 cut(s)	128, 762
DseDI	GACNNNNNNGTC	2 cut(s)	128, 762
EciI	GGCGGA	1 cut(s)	576
Eco147I	AGGCCT	1 cut(s)	428
Eco47I	GGWCC	2 cut(s)	346, 755
Eco57I	CTGAAG	1 cut(s)	37
Eco72I	CACGTG	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	328
EcoRII	CCWGG	2 cut(s)	540, 725
EcoT22I	ATGCAT	1 cut(s)	463
EgeI	GGCGCC	2 cut(s)	579, 612
EheI	GGCGCC	2 cut(s)	579, 612
Esp3I	CGTCTC	1 cut(s)	770
FaeI	CATG	3 cut(s)	465, 662, 914
FatI	CATG	3 cut(s)	461, 658, 910
Fnu4HI	GCNGC	8 cut(s)	219, 253, 315, 381, 396, 416, 576, 581
FokI	GGATG	2 cut(s)	692, 720
Fsp4HI	GCNGC	8 cut(s)	219, 253, 315, 381, 396, 416, 576, 581
FspBI	CTAG	1 cut(s)	554
GlaI	GCGC	4 cut(s)	360, 384, 579, 612
GluI	GCNGC	8 cut(s)	219, 253, 315, 381, 396, 416, 576, 581
GsuI	CTGGAG	1 cut(s)	871
HaeII	RGCGCY	2 cut(s)	581, 614
HaeIII	GGCC	4 cut(s)	102, 283, 329, 428
HapII	CCGG	5 cut(s)	230, 344, 352, 362, 519
HgaI	GACGC	2 cut(s)	62, 253
HhaI	GCGC	4 cut(s)	361, 385, 580, 613
Hin1I	GRCGYC	3 cut(s)	73, 578, 611
Hin1II	CATG	3 cut(s)	465, 662, 914
Hin6I	GCGC	4 cut(s)	359, 383, 578, 611
HinP1I	GCGC	4 cut(s)	359, 383, 578, 611
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	2 cut(s)	111, 512
HpaII	CCGG	5 cut(s)	230, 344, 352, 362, 519
HphI	GGTGA	5 cut(s)	333, 461, 521, 530, 853
Hpy166II	GTNNAC	4 cut(s)	484, 636, 767, 857
Hpy188I	TCNGA	3 cut(s)	308, 646, 940
Hpy188III	TCNNGA	2 cut(s)	659, 788
Hpy8I	GTNNAC	4 cut(s)	484, 636, 767, 857
Hpy99I	CGWCG	3 cut(s)	62, 78, 269
HpyAV	CCTTC	1 cut(s)	710
HpyCH4III	ACNGT	5 cut(s)	62, 125, 455, 764, 781
HpyCH4IV	ACGT	6 cut(s)	18, 274, 297, 469, 600, 963
HpyCH4V	TGCA	3 cut(s)	418, 461, 947
HpyF10VI	GCNNNNNNNGC	4 cut(s)	261, 661, 709, 953
HpyF3I	CTNAG	3 cut(s)	214, 222, 937
HpySE526I	ACGT	6 cut(s)	18, 274, 297, 469, 600, 963
Hsp92I	GRCGYC	3 cut(s)	73, 578, 611
Hsp92II	CATG	3 cut(s)	465, 662, 914
HspAI	GCGC	4 cut(s)	359, 383, 578, 611
KasI	GGCGCC	2 cut(s)	577, 610
Kzo9I	GATC	6 cut(s)	154, 563, 730, 784, 790, 836
LmnI	GCTCC	5 cut(s)	231, 364, 378, 652, 719
Lsp1109I	GCAGC	4 cut(s)	205, 326, 367, 402
LweI	GCATC	2 cut(s)	382, 448
MaeI	CTAG	1 cut(s)	554
MaeII	ACGT	6 cut(s)	18, 274, 297, 469, 600, 963
MaeIII	GTNAC	2 cut(s)	339, 449
MalI	GATC	6 cut(s)	156, 565, 732, 786, 792, 838
MboI	GATC	6 cut(s)	154, 563, 730, 784, 790, 836
MboII	GAAGA	3 cut(s)	43, 127, 507
MflI	RGATCY	1 cut(s)	784
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	4 cut(s)	866, 879, 893, 924
Mly113I	GGCGCC	2 cut(s)	578, 611
Mph1103I	ATGCAT	1 cut(s)	463
MseI	TTAA	2 cut(s)	927, 969
MspA1I	CMGCKG	2 cut(s)	218, 739
MspI	CCGG	5 cut(s)	230, 344, 352, 362, 519
MspR9I	CCNGG	3 cut(s)	230, 542, 727
Mva1269I	GAATGC	2 cut(s)	39, 956
MvaI	CCWGG	2 cut(s)	542, 727
MwoI	GCNNNNNNNGC	4 cut(s)	261, 661, 709, 953
NarI	GGCGCC	2 cut(s)	578, 611
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	6 cut(s)	154, 563, 730, 784, 790, 836
NlaIII	CATG	3 cut(s)	465, 662, 914
NlaIV	GGNNCC	6 cut(s)	7, 284, 526, 579, 612, 654
NmuCI	GTSAC	2 cut(s)	339, 449
NsiI	ATGCAT	1 cut(s)	463
PagI	TCATGA	1 cut(s)	658
PceI	AGGCCT	1 cut(s)	428
PctI	GAATGC	2 cut(s)	39, 956
PfeI	GAWTC	2 cut(s)	111, 512
PflMI	CCANNNNNTGG	1 cut(s)	620
PkrI	GCNGC	8 cut(s)	220, 254, 316, 382, 397, 417, 577, 582
PluTI	GGCGCC	2 cut(s)	581, 614
PmaCI	CACGTG	1 cut(s)	275
PmlI	CACGTG	1 cut(s)	275
Ppu21I	YACGTR	3 cut(s)	275, 470, 601
PshBI	ATTAAT	1 cut(s)	927
Psp6I	CCWGG	2 cut(s)	540, 725
PspCI	CACGTG	1 cut(s)	275
PspGI	CCWGG	2 cut(s)	540, 725
PspN4I	GGNNCC	6 cut(s)	7, 284, 526, 579, 612, 654
PspPI	GGNCC	5 cut(s)	101, 282, 328, 346, 755
PsuI	RGATCY	1 cut(s)	784
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	3 cut(s)	591, 599, 848
RsaNI	GTAC	3 cut(s)	590, 598, 847
SaqAI	TTAA	2 cut(s)	927, 969
SatI	GCNGC	8 cut(s)	219, 253, 315, 381, 396, 416, 576, 581
Sau3AI	GATC	6 cut(s)	154, 563, 730, 784, 790, 836
Sau96I	GGNCC	5 cut(s)	101, 282, 328, 346, 755
ScrFI	CCNGG	3 cut(s)	230, 542, 727
SduI	GDGCHC	1 cut(s)	240
SfaNI	GCATC	2 cut(s)	382, 448
SfoI	GGCGCC	2 cut(s)	579, 612
SinI	GGWCC	2 cut(s)	346, 755
SmlI	CTYRAG	2 cut(s)	323, 773
SmoI	CTYRAG	2 cut(s)	323, 773
Sse9I	AATT	4 cut(s)	866, 879, 893, 924
SseBI	AGGCCT	1 cut(s)	428
SspDI	GGCGCC	2 cut(s)	577, 610
SspMI	CTAG	1 cut(s)	554
StuI	AGGCCT	1 cut(s)	428
StyD4I	CCNGG	3 cut(s)	228, 540, 725
TaaI	ACNGT	5 cut(s)	62, 125, 455, 764, 781
TaiI	ACGT	6 cut(s)	21, 277, 300, 472, 603, 966
TaqI	TCGA	2 cut(s)	109, 117
TasI	AATT	4 cut(s)	866, 879, 893, 924
TatI	WGTACW	1 cut(s)	846
TauI	GCSGC	4 cut(s)	255, 398, 578, 583
TfiI	GAWTC	2 cut(s)	111, 512
Tru1I	TTAA	2 cut(s)	927, 969
Tru9I	TTAA	2 cut(s)	927, 969
TseFI	GTSAC	2 cut(s)	339, 449
TseI	GCWGC	4 cut(s)	218, 314, 380, 415
Tsp45I	GTSAC	2 cut(s)	339, 449
TspDTI	ATGAA	4 cut(s)	103, 834, 966, 999
TspGWI	ACGGA	2 cut(s)	118, 167
Van91I	CCANNNNNTGG	1 cut(s)	620
VpaK11BI	GGWCC	2 cut(s)	346, 755
VspI	ATTAAT	1 cut(s)	927
XapI	RAATTY	1 cut(s)	893
XspI	CTAG	1 cut(s)	554
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.