Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Reverse (-)

33402485 .. 33404478

Gene Structure 1994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45100

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGAACTGTATATGCCAGATGTTGAGAATTGGTCTGGATCAAAATTGCTTGGGGAGCATGTTGGTGGATCAGCTGTGAGATCAATATGCTCTGTGTCAAAGATAAACATACTTCAATCAGATATGACAGGCATTCCCAATTTGAGAACTGGTAACAATGGAGCAACAGAGAATAGAGAAACTCCGACGTTATTGATTTCTGTTGGTGCAAAGCGGGTCTTGACTTCTTGGCTACTAAGAAATAGGAAAGTAGACAAGAAGGAAGAAATAGTATGTGATCCGCAGCATGACAACACTGGAAATGGCAATACATGTTTGTCCCCAGAGTCGCCTTCAATGTCATTCCAGTGGCTTTCTACAGATATGCCAGCAAAATATTCTAGTATTCAAAAACTTCCGAAGAACATTGAAAAAAGAGCTGATCAAGCCGGGGATGTTTCTGATGGGAAAGATGATGCAGCATCAGAAAAGGGAAACAAAGAGTTGAACTCCTGCATTAAAGATAAATATGAAGATGACTGGAGATACATGGCTGTTACTGCTTTTCTTGTAAAGTGTGCCAATTCCAGGATAACTGTCTGTTTTATTGGTGTCGCTTGTTCTGACGCCACCCTTGCATTACGGGCTTTAGTTTTGCCCTATAGGCTATGGTTTGATGTTGCTTTTCTGTGTCCTCTATCATCACCAGTTCTGTCCCTACAGCATGTCATCCTTCCTGCATGTCTACCTTCTGAAGCAATTGGCAGATTGGAAGTTTGTATATTCTCATCAGTGGGGCCACTGATGGAAGTATTGCCTTTTGGGACATCACTAGAAGCATCGAAGCTTTTATGCAGCTGGTATCAGTACTTGATACAGAAAAGTTTATTGACTGTCAAAGGCGGCCGAGAACAGGGAGGGGAAGTCAGGGTGGACGATGGTGGAGATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

310

Amino Acids

33.94

Weight (kDa)

5.56

Isoelectric Point (pI)

49.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	252, 724
AciI	CCGC	3 cut(s)	214, 281, 882
AclWI	GGATC	3 cut(s)	46, 76, 272
AcoI	YGGCCR	1 cut(s)	883
AcuI	CTGAAG	1 cut(s)	753
AcyI	GRCGYC	1 cut(s)	606
AfaI	GTAC	1 cut(s)	848
AfiI	CCNNNNNNNGG	2 cut(s)	567, 892
AflIII	ACRYGT	1 cut(s)	311
AgsI	TTSAA	5 cut(s)	116, 336, 389, 410, 487
AjnI	CCWGG	1 cut(s)	566
AluBI	AGCT	4 cut(s)	74, 419, 826, 837
AluI	AGCT	4 cut(s)	74, 419, 826, 837
AlwI	GGATC	3 cut(s)	46, 76, 272
AoxI	GGCC	2 cut(s)	776, 883
ApeKI	GCWGC	3 cut(s)	283, 458, 834
AspS9I	GGNCC	1 cut(s)	776
AsuC2I	CCSGG	1 cut(s)	430
AsuHPI	GGTGA	1 cut(s)	675
BbvI	GCAGC	3 cut(s)	295, 470, 846
BccI	CCATC	3 cut(s)	437, 778, 911
BciT130I	CCWGG	1 cut(s)	568
BclI	TGATCA	1 cut(s)	421
BcnI	CCSGG	1 cut(s)	430
BfaI	CTAG	2 cut(s)	381, 812
BfmI	CTRYAG	3 cut(s)	357, 640, 698
BglI	GCCNNNNNGGC	1 cut(s)	643
BglII	AGATCT	1 cut(s)	925
BisI	GCNGC	4 cut(s)	284, 459, 835, 883
BlsI	GCNGC	4 cut(s)	285, 460, 836, 884
BmcAI	AGTACT	1 cut(s)	848
Bme1390I	CCNGG	2 cut(s)	430, 568
BmgT120I	GGNCC	1 cut(s)	776
BmiI	GGNNCC	1 cut(s)	777
BmrFI	CCNGG	2 cut(s)	430, 568
BmsI	GCATC	3 cut(s)	445, 470, 827
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
BpmI	CTGGAG	1 cut(s)	541
BpuMI	CCSGG	1 cut(s)	430
BsaHI	GRCGYC	1 cut(s)	606
BsaJI	CCNNGG	1 cut(s)	429
BsaXI	ACNNNNNCTCC	2 cut(s)	888, 918
Bsc4I	CCNNNNNNNGG	2 cut(s)	567, 892
Bse1I	ACTGG	5 cut(s)	154, 301, 346, 524, 686
BseBI	CCWGG	1 cut(s)	568
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	2 cut(s)	439, 708
BseLI	CCNNNNNNNGG	2 cut(s)	567, 892
BseNI	ACTGG	5 cut(s)	154, 301, 346, 524, 686
BseX3I	CGGCCG	1 cut(s)	883
BseXI	GCAGC	3 cut(s)	295, 470, 846
Bsh1285I	CGRYCG	1 cut(s)	886
BshFI	GGCC	2 cut(s)	778, 885
BsiEI	CGRYCG	1 cut(s)	886
BsiSI	CCGG	1 cut(s)	429
BslFI	GGGAC	3 cut(s)	304, 679, 817
BslI	CCNNNNNNNGG	2 cut(s)	567, 892
BsmFI	GGGAC	3 cut(s)	304, 679, 817
BsmI	GAATGC	1 cut(s)	132
BsnI	GGCC	2 cut(s)	778, 885
Bsp143I	GATC	6 cut(s)	38, 68, 80, 277, 421, 925
BspACI	CCGC	3 cut(s)	214, 281, 882
BspANI	GGCC	2 cut(s)	778, 885
BspLI	GGNNCC	1 cut(s)	777
BspPI	GGATC	3 cut(s)	46, 76, 272
BsrI	ACTGG	5 cut(s)	154, 301, 346, 524, 686
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	6 cut(s)	38, 68, 80, 277, 421, 925
BssNI	GRCGYC	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	568
Bst4CI	ACNGT	3 cut(s)	9, 577, 874
BstACI	GRCGYC	1 cut(s)	606
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	1 cut(s)	236
BstF5I	GGATG	2 cut(s)	439, 708
BstKTI	GATC	6 cut(s)	41, 71, 83, 280, 424, 928
BstMBI	GATC	6 cut(s)	38, 68, 80, 277, 421, 925
BstMCI	CGRYCG	1 cut(s)	886
BstMWI	GCNNNNNNNGC	6 cut(s)	55, 425, 539, 614, 623, 643
BstNI	CCWGG	1 cut(s)	568
BstNSI	RCATGY	4 cut(s)	62, 315, 707, 723
BstSCI	CCNGG	2 cut(s)	428, 566
BstSFI	CTRYAG	3 cut(s)	357, 640, 698
BstV1I	GCAGC	3 cut(s)	295, 470, 846
BstX2I	RGATCY	1 cut(s)	925
BstYI	RGATCY	1 cut(s)	925
BstZI	CGGCCG	1 cut(s)	883
BsuRI	GGCC	2 cut(s)	778, 885
BtsCI	GGATG	2 cut(s)	439, 708
BtsIMutI	CAGTG	4 cut(s)	294, 353, 777, 779
Cac8I	GCNNGC	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	776
CseI	GACGC	1 cut(s)	614
Csp6I	GTAC	1 cut(s)	847
CviAII	CATG	6 cut(s)	59, 287, 312, 529, 704, 720
CviQI	GTAC	1 cut(s)	847
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	6 cut(s)	40, 70, 82, 279, 423, 927
DpnII	GATC	6 cut(s)	38, 68, 80, 277, 421, 925
EaeI	YGGCCR	1 cut(s)	883
EagI	CGGCCG	1 cut(s)	883
EclXI	CGGCCG	1 cut(s)	883
Eco52I	CGGCCG	1 cut(s)	883
Eco57I	CTGAAG	1 cut(s)	753
EcoRII	CCWGG	1 cut(s)	566
FaeI	CATG	6 cut(s)	62, 290, 315, 532, 707, 723
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FaqI	GGGAC	3 cut(s)	304, 679, 817
FatI	CATG	6 cut(s)	58, 286, 311, 528, 703, 719
FauI	CCCGC	1 cut(s)	207
FbaI	TGATCA	1 cut(s)	421
FblI	GTMKAC	2 cut(s)	252, 724
Fnu4HI	GCNGC	4 cut(s)	284, 459, 835, 883
FokI	GGATG	2 cut(s)	446, 695
Fsp4HI	GCNGC	4 cut(s)	284, 459, 835, 883
FspBI	CTAG	2 cut(s)	381, 812
GluI	GCNGC	4 cut(s)	284, 459, 835, 883
GsuI	CTGGAG	1 cut(s)	541
HaeIII	GGCC	2 cut(s)	778, 885
HapII	CCGG	1 cut(s)	429
HgaI	GACGC	1 cut(s)	614
Hin1I	GRCGYC	1 cut(s)	606
Hin1II	CATG	6 cut(s)	62, 290, 315, 532, 707, 723
HindIII	AAGCTT	1 cut(s)	824
HinfI	GANTC	1 cut(s)	326
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	1 cut(s)	675
Hpy166II	GTNNAC	3 cut(s)	253, 725, 913
Hpy188I	TCNGA	7 cut(s)	121, 186, 399, 442, 466, 604, 733
Hpy188III	TCNNGA	2 cut(s)	36, 220
Hpy8I	GTNNAC	3 cut(s)	253, 725, 913
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	4 cut(s)	253, 342, 722, 738
HpyCH4III	ACNGT	3 cut(s)	9, 577, 874
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	6 cut(s)	209, 458, 495, 617, 719, 834
HpyF10VI	GCNNNNNNNGC	6 cut(s)	55, 425, 539, 614, 623, 643
HpyF3I	CTNAG	1 cut(s)	236
HpySE526I	ACGT	1 cut(s)	188
Hsp92I	GRCGYC	1 cut(s)	606
Hsp92II	CATG	6 cut(s)	62, 290, 315, 532, 707, 723
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	6 cut(s)	38, 68, 80, 277, 421, 925
LmnI	GCTCC	2 cut(s)	55, 161
Lsp1109I	GCAGC	3 cut(s)	295, 470, 846
LweI	GCATC	3 cut(s)	445, 470, 827
MaeI	CTAG	2 cut(s)	381, 812
MaeII	ACGT	1 cut(s)	188
MaeIII	GTNAC	2 cut(s)	152, 535
MalI	GATC	6 cut(s)	40, 70, 82, 279, 423, 927
MboI	GATC	6 cut(s)	38, 68, 80, 277, 421, 925
MboII	GAAGA	3 cut(s)	275, 412, 524
MfeI	CAATTG	1 cut(s)	738
MflI	RGATCY	1 cut(s)	925
MluCI	AATT	5 cut(s)	28, 44, 139, 562, 738
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	2 cut(s)	684, 890
MseI	TTAA	1 cut(s)	498
MslI	CAYNNNNRTG	2 cut(s)	63, 346
MspA1I	CMGCKG	2 cut(s)	74, 837
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	2 cut(s)	430, 568
MunI	CAATTG	1 cut(s)	738
Mva1269I	GAATGC	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	568
MwoI	GCNNNNNNNGC	6 cut(s)	55, 425, 539, 614, 623, 643
NciI	CCSGG	1 cut(s)	430
NdeII	GATC	6 cut(s)	38, 68, 80, 277, 421, 925
NlaIII	CATG	6 cut(s)	62, 290, 315, 532, 707, 723
NlaIV	GGNNCC	1 cut(s)	777
NmeAIII	GCCGAG	1 cut(s)	911
NspI	RCATGY	4 cut(s)	62, 315, 707, 723
PciI	ACATGT	1 cut(s)	311
PctI	GAATGC	1 cut(s)	132
PfoI	TCCNGGA	1 cut(s)	566
PkrI	GCNGC	4 cut(s)	285, 460, 836, 884
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PscI	ACATGT	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	566
PspGI	CCWGG	1 cut(s)	566
PspN4I	GGNNCC	1 cut(s)	777
PspPI	GGNCC	1 cut(s)	776
PsuI	RGATCY	1 cut(s)	925
PvuII	CAGCTG	2 cut(s)	74, 837
RsaI	GTAC	1 cut(s)	848
RsaNI	GTAC	1 cut(s)	847
RseI	CAYNNNNRTG	2 cut(s)	63, 346
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	4 cut(s)	284, 459, 835, 883
Sau3AI	GATC	6 cut(s)	38, 68, 80, 277, 421, 925
Sau96I	GGNCC	1 cut(s)	776
ScaI	AGTACT	1 cut(s)	848
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	2 cut(s)	430, 568
SetI	ASST	6 cut(s)	76, 191, 421, 730, 828, 839
SfaNI	GCATC	3 cut(s)	445, 470, 827
SfcI	CTRYAG	3 cut(s)	357, 640, 698
SmiMI	CAYNNNNRTG	2 cut(s)	63, 346
Sse9I	AATT	5 cut(s)	28, 44, 139, 562, 738
SsiI	CCGC	3 cut(s)	214, 281, 882
SspI	AATATT	1 cut(s)	377
SspMI	CTAG	2 cut(s)	381, 812
StyD4I	CCNGG	2 cut(s)	428, 566
TaaI	ACNGT	3 cut(s)	9, 577, 874
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	1 cut(s)	821
TasI	AATT	5 cut(s)	28, 44, 139, 562, 738
TatI	WGTACW	1 cut(s)	846
TauI	GCSGC	1 cut(s)	885
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	4 cut(s)	301, 353, 777, 786
TseI	GCWGC	3 cut(s)	283, 458, 834
TspDTI	ATGAA	1 cut(s)	525
TspRI	CASTG	4 cut(s)	301, 353, 777, 786
XceI	RCATGY	4 cut(s)	62, 315, 707, 723
XmiI	GTMKAC	2 cut(s)	252, 724
XspI	CTAG	2 cut(s)	381, 812
ZrmI	AGTACT	1 cut(s)	848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.