Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Forward (+)

25655999 .. 25668142

Gene Structure 12144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00237910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCTCGGCGGAGCAGATGGGTGTATATGCTATACGGAATATGACAAAGATAGGCATGATTTGGAATTTATAGGGATGAAACAAGTGAAGGAGTTGAGTCTTATTCAATCGATCTCTGCGTGCAATAGATGCGTGAACGAGCCATCAAACGTCATTATGCTTGCTGGTTTTGCATCGTCACTTAGTGGCCTAGTTAGCATCCTCTTAGCCAAATTAACCAACCACAACACTAGTATTAGAAAGTGGTTCCACCACTCCCCTAGCTGTTCCCTTTCTCTACAGCTCACACCCCACTTCCTCCTTCCTTTCGATTCCTCTCCCTTCCTCGGTCAAAAAAAAAAAAAAATGAAGAAGGAGAGATGCGGATCGAGCCACCATGGCATGACCTCCGAAGGCAATGACTATGGAGAAGAAGAAGAGCGGCTCATGGGGTCTGCAAAGTGGTCAATATCCGGGAGAAGTGTCAGCCCTGTGTTTCTTTCACCTACCTTCTCACCGTCGATAAGGGAGCTTCCTTATTTAGTTGCGGGTCGGGTTCGCAAATCTTGGTCTATGATTTGGAACCGGGAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

191

Amino Acids

21.37

Weight (kDa)

8.92

Isoelectric Point (pI)

55.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	421
AciI	CCGC	4 cut(s)	9, 363, 421, 527
AclWI	GGATC	1 cut(s)	373
AcsI	RAATTY	1 cut(s)	65
AdeI	CACNNNGTG	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	326
AgsI	TTSAA	1 cut(s)	107
AhlI	ACTAGT	1 cut(s)	230
AluBI	AGCT	3 cut(s)	264, 283, 511
AluI	AGCT	3 cut(s)	264, 283, 511
AlwI	GGATC	1 cut(s)	373
AoxI	GGCC	1 cut(s)	187
ApoI	RAATTY	1 cut(s)	65
AsuC2I	CCSGG	2 cut(s)	454, 566
AsuHPI	GGTGA	2 cut(s)	474, 486
BccI	CCATC	2 cut(s)	11, 151
BcnI	CCSGG	2 cut(s)	454, 566
BcuI	ACTAGT	1 cut(s)	230
BfaI	CTAG	3 cut(s)	191, 231, 261
BfmI	CTRYAG	1 cut(s)	278
BglI	GCCNNNNNGGC	1 cut(s)	378
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
Bme1390I	CCNGG	2 cut(s)	454, 566
BmiI	GGNNCC	3 cut(s)	248, 563, 570
BmrFI	CCNGG	2 cut(s)	454, 566
BmsI	GCATC	4 cut(s)	119, 182, 207, 350
BpuMI	CCSGG	2 cut(s)	454, 566
Bsa29I	ATCGAT	1 cut(s)	110
BsaBI	GATNNNNATC	1 cut(s)	364
BsaJI	CCNNGG	2 cut(s)	325, 376
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	403
Bse8I	GATNNNNATC	1 cut(s)	364
BseCI	ATCGAT	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	325, 376
BseGI	GGATG	2 cut(s)	81, 198
BseJI	GATNNNNATC	1 cut(s)	364
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMI	GCAATG	1 cut(s)	403
BshFI	GGCC	1 cut(s)	189
BshVI	ATCGAT	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	453, 565
BslI	CCNNNNNNNGG	1 cut(s)	326
BsnI	GGCC	1 cut(s)	189
Bsp143I	GATC	2 cut(s)	111, 365
Bsp19I	CCATGG	1 cut(s)	376
BspACI	CCGC	4 cut(s)	9, 363, 421, 527
BspANI	GGCC	1 cut(s)	189
BspDI	ATCGAT	1 cut(s)	110
BspLI	GGNNCC	3 cut(s)	248, 563, 570
BspPI	GGATC	1 cut(s)	373
BspQI	GCTCTTC	1 cut(s)	411
BsrBI	CCGCTC	1 cut(s)	421
BsrDI	GCAATG	1 cut(s)	403
BssECI	CCNNGG	2 cut(s)	325, 376
BssMI	GATC	2 cut(s)	111, 365
BssT1I	CCWWGG	1 cut(s)	376
Bst4CI	ACNGT	1 cut(s)	498
Bst6I	CTCTTC	1 cut(s)	411
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	121, 162
BstDEI	CTNAG	2 cut(s)	182, 205
BstDSI	CCRYGG	1 cut(s)	376
BstF5I	GGATG	2 cut(s)	81, 198
BstKTI	GATC	2 cut(s)	114, 368
BstMBI	GATC	2 cut(s)	111, 365
BstMWI	GCNNNNNNNGC	5 cut(s)	129, 170, 195, 369, 378
BstSCI	CCNGG	2 cut(s)	452, 564
BstSFI	CTRYAG	1 cut(s)	278
Bsu15I	ATCGAT	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	189
BsuTUI	ATCGAT	1 cut(s)	110
BtgI	CCRYGG	1 cut(s)	376
BtsCI	GGATG	2 cut(s)	81, 198
Cac8I	GCNNGC	2 cut(s)	121, 162
ClaI	ATCGAT	1 cut(s)	110
CviAII	CATG	5 cut(s)	56, 377, 382, 427, 573
CviJI	RGCY	9 cut(s)	142, 189, 209, 264, 283, 372, 424, 468, 511
CviKI_1	RGCY	9 cut(s)	142, 189, 209, 264, 283, 372, 424, 468, 511
DdeI	CTNAG	2 cut(s)	182, 205
DpnI	GATC	2 cut(s)	113, 367
DpnII	GATC	2 cut(s)	111, 365
DraIII	CACNNNGTG	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
EciI	GGCGGA	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	5 cut(s)	59, 380, 385, 430, 576
FatI	CATG	5 cut(s)	55, 376, 381, 426, 572
FauI	CCCGC	1 cut(s)	520
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	2 cut(s)	88, 185
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	3 cut(s)	191, 231, 261
GluI	GCNGC	1 cut(s)	422
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	2 cut(s)	453, 565
Hin1II	CATG	5 cut(s)	59, 380, 385, 430, 576
HinfI	GANTC	2 cut(s)	97, 311
HpaII	CCGG	2 cut(s)	453, 565
HphI	GGTGA	2 cut(s)	474, 486
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	391
Hpy8I	GTNNAC	1 cut(s)	136
Hpy99I	CGWCG	1 cut(s)	502
HpyAV	CCTTC	6 cut(s)	82, 311, 331, 346, 386, 499
HpyCH4III	ACNGT	1 cut(s)	498
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	123, 173, 437
HpyF10VI	GCNNNNNNNGC	5 cut(s)	129, 170, 195, 369, 378
HpyF3I	CTNAG	2 cut(s)	182, 205
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	5 cut(s)	59, 380, 385, 430, 576
Kzo9I	GATC	2 cut(s)	111, 365
LguI	GCTCTTC	1 cut(s)	411
LmnI	GCTCC	2 cut(s)	11, 508
LpnPI	CCDG	3 cut(s)	150, 466, 483
LweI	GCATC	4 cut(s)	119, 182, 207, 350
MaeI	CTAG	3 cut(s)	191, 231, 261
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	177
MalI	GATC	2 cut(s)	113, 367
MbiI	CCGCTC	1 cut(s)	421
MboI	GATC	2 cut(s)	111, 365
MboII	GAAGA	4 cut(s)	361, 422, 425, 428
MluCI	AATT	2 cut(s)	65, 212
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	5 cut(s)	212, 308, 325, 335, 397
MseI	TTAA	1 cut(s)	215
MspI	CCGG	2 cut(s)	453, 565
MspR9I	CCNGG	2 cut(s)	454, 566
MwoI	GCNNNNNNNGC	5 cut(s)	129, 170, 195, 369, 378
NciI	CCSGG	2 cut(s)	454, 566
NcoI	CCATGG	1 cut(s)	376
NdeII	GATC	2 cut(s)	111, 365
NlaIII	CATG	5 cut(s)	59, 380, 385, 430, 576
NlaIV	GGNNCC	3 cut(s)	248, 563, 570
NmuCI	GTSAC	1 cut(s)	177
PciSI	GCTCTTC	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	311
PfoI	TCCNGGA	1 cut(s)	452
PkrI	GCNGC	1 cut(s)	423
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
PspN4I	GGNNCC	3 cut(s)	248, 563, 570
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	2 cut(s)	111, 365
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	2 cut(s)	454, 566
SetI	ASST	7 cut(s)	153, 266, 285, 389, 487, 491, 513
SfaNI	GCATC	4 cut(s)	119, 182, 207, 350
SfcI	CTRYAG	1 cut(s)	278
SpeI	ACTAGT	1 cut(s)	230
Sse9I	AATT	2 cut(s)	65, 212
SsiI	CCGC	4 cut(s)	9, 363, 421, 527
SspMI	CTAG	3 cut(s)	191, 231, 261
StyD4I	CCNGG	2 cut(s)	452, 564
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	1 cut(s)	498
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	4 cut(s)	110, 309, 368, 500
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	2 cut(s)	65, 212
TauI	GCSGC	1 cut(s)	424
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TseFI	GTSAC	1 cut(s)	177
Tsp45I	GTSAC	1 cut(s)	177
TspDTI	ATGAA	2 cut(s)	92, 362
TspGWI	ACGGA	1 cut(s)	50
XapI	RAATTY	1 cut(s)	65
XspI	CTAG	3 cut(s)	191, 231, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.