Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Reverse (-)

33400637 .. 33402416

Gene Structure 1780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45099

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGATTCCTCATCGGACGTGTGAAATATCACCTTTGCTTGTCTTCAAGGCCATTCACCAATCTGGTGTCAATTCTGTGCATGTTTCAGATGTAGAGGGTTGTCTAAGTCCTGAAATCGGTTTTCGCTATAATTTAATCAGTGGGGGTGATGATCAAGCCCTTAGCTGTCTTACATTTGAATTGTCAGTGTCAACATTAAGCTCTGAATTTGATAATATGACGCTGGAAATCAAAAATTCAATCACTGAACTTGGAGTTGCGAAGAATTTAATTCATTCTAACCAAGACAAGAAGAAGAACTATTGGATCCGATTCTTAAATCATGATAGAGCCCCCTCAGCTCACAGCTCTGCTGTAAAAGGTGTTTGGACAGACGGATCTTGGGTTTTTTCAACTGGTCTGGATCAGCGTGTCAGGTGCTGGCGTCTTCAGGAGGAAGGTAAATTAATCGAGTATGCTTATTTGGTCATCAGTGTGCCCGAGCCAGAAGCACTGGATGCTAAACTGTGTGGTAGGAACAAATATCAGATTGCAGTAGCTGGGAGGGGAATGCAGATGCTGGAGTTCTCTGAATTTTCTGGCATCAGTGATATAACCCAAACTAAAATGATTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

205

Amino Acids

22.91

Weight (kDa)

5.86

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	301, 314, 385, 411
AcsI	RAATTY	4 cut(s)	206, 235, 265, 572
AcuI	CTGAAG	1 cut(s)	413
AcyI	GRCGYC	1 cut(s)	424
AfiI	CCNNNNNNNGG	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	17
AgsI	TTSAA	4 cut(s)	46, 179, 240, 393
AjiI	CACGTC	1 cut(s)	18
AluBI	AGCT	5 cut(s)	165, 201, 341, 348, 539
AluI	AGCT	5 cut(s)	165, 201, 341, 348, 539
AlwI	GGATC	4 cut(s)	301, 314, 385, 411
AlwNI	CAGNNNCTG	3 cut(s)	420, 539, 559
Ama87I	CYCGRG	1 cut(s)	479
AoxI	GGCC	1 cut(s)	48
ApoI	RAATTY	4 cut(s)	206, 235, 265, 572
AseI	ATTAAT	1 cut(s)	446
AsuHPI	GGTGA	3 cut(s)	21, 47, 158
AvaI	CYCGRG	1 cut(s)	479
BaeGI	GKGCMC	1 cut(s)	480
BamHI	GGATCC	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	334
BbsI	GAAGAC	2 cut(s)	34, 419
BbvCI	CCTCAGC	1 cut(s)	337
BclI	TGATCA	1 cut(s)	151
BmeT110I	CYCGRG	1 cut(s)	479
BmgBI	CACGTC	1 cut(s)	18
BmiI	GGNNCC	1 cut(s)	308
BmsI	GCATC	3 cut(s)	487, 546, 591
BpiI	GAAGAC	2 cut(s)	34, 419
BpmI	CTGGAG	1 cut(s)	581
Bpu10I	CCTNAGC	2 cut(s)	161, 337
BsaHI	GRCGYC	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	2 cut(s)	400, 498
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	2 cut(s)	400, 498
BseSI	GKGCMC	1 cut(s)	480
BseYI	CCCAGC	1 cut(s)	539
BshFI	GGCC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	479
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	555
BsnI	GGCC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	479
Bsp1286I	GDGCHC	2 cut(s)	334, 480
Bsp143I	GATC	4 cut(s)	151, 306, 377, 403
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	350
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	1 cut(s)	308
BspPI	GGATC	4 cut(s)	301, 314, 385, 411
BsrI	ACTGG	2 cut(s)	400, 498
BssMI	GATC	4 cut(s)	151, 306, 377, 403
BssNI	GRCGYC	1 cut(s)	424
Bst4CI	ACNGT	1 cut(s)	507
BstACI	GRCGYC	1 cut(s)	424
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	3 cut(s)	104, 161, 337
BstF5I	GGATG	1 cut(s)	502
BstKTI	GATC	4 cut(s)	154, 309, 380, 406
BstMBI	GATC	4 cut(s)	151, 306, 377, 403
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 497
BstNSI	RCATGY	1 cut(s)	83
BstSLI	GKGCMC	1 cut(s)	480
BstV2I	GAAGAC	2 cut(s)	34, 419
BstX2I	RGATCY	2 cut(s)	306, 377
BstYI	RGATCY	2 cut(s)	306, 377
BsuRI	GGCC	1 cut(s)	50
BtrI	CACGTC	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	502
BtsIMutI	CAGTG	6 cut(s)	145, 192, 243, 478, 491, 592
Cac8I	GCNNGC	1 cut(s)	422
CaiI	CAGNNNCTG	3 cut(s)	420, 539, 559
CciI	TCATGA	1 cut(s)	322
CseI	GACGC	2 cut(s)	229, 413
CviAII	CATG	2 cut(s)	80, 323
CviJI	RGCY	9 cut(s)	50, 158, 165, 201, 332, 341, 348, 484, 539
CviKI_1	RGCY	9 cut(s)	50, 158, 165, 201, 332, 341, 348, 484, 539
DdeI	CTNAG	3 cut(s)	104, 161, 337
DpnI	GATC	4 cut(s)	153, 308, 379, 405
DpnII	GATC	4 cut(s)	151, 306, 377, 403
Eco24I	GRGCYC	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	413
Eco88I	CYCGRG	1 cut(s)	479
EcoT38I	GRGCYC	1 cut(s)	334
FaeI	CATG	2 cut(s)	83, 326
FaiI	YATR	8 cut(s)	81, 129, 218, 324, 456, 593, 614, 616
FatI	CATG	2 cut(s)	79, 322
FbaI	TGATCA	1 cut(s)	151
FokI	GGATG	1 cut(s)	509
FriOI	GRGCYC	1 cut(s)	334
GsaI	CCCAGC	1 cut(s)	543
GsuI	CTGGAG	1 cut(s)	581
HaeIII	GGCC	1 cut(s)	50
HgaI	GACGC	2 cut(s)	229, 413
Hin1I	GRCGYC	1 cut(s)	424
Hin1II	CATG	2 cut(s)	83, 326
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HinfI	GANTC	2 cut(s)	4, 312
HphI	GGTGA	3 cut(s)	21, 47, 158
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188I	TCNGA	6 cut(s)	15, 88, 205, 311, 528, 571
Hpy188III	TCNNGA	4 cut(s)	110, 323, 401, 431
Hpy8I	GTNNAC	1 cut(s)	192
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	1 cut(s)	507
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	3 cut(s)	79, 533, 553
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 497
HpyF3I	CTNAG	3 cut(s)	104, 161, 337
HpySE526I	ACGT	1 cut(s)	17
Hsp92I	GRCGYC	1 cut(s)	424
Hsp92II	CATG	2 cut(s)	83, 326
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	4 cut(s)	151, 306, 377, 403
LweI	GCATC	3 cut(s)	487, 546, 591
MaeII	ACGT	1 cut(s)	17
MalI	GATC	4 cut(s)	153, 308, 379, 405
MboI	GATC	4 cut(s)	151, 306, 377, 403
MboII	GAAGA	5 cut(s)	34, 274, 304, 307, 419
MflI	RGATCY	2 cut(s)	306, 377
MhlI	GDGCHC	2 cut(s)	334, 480
MluCI	AATT	9 cut(s)	70, 130, 179, 206, 235, 265, 270, 443, 572
MnlI	CCTC	5 cut(s)	18, 88, 346, 427, 537
MseI	TTAA	5 cut(s)	134, 197, 269, 317, 446
MslI	CAYNNNNRTG	1 cut(s)	473
Mva1269I	GAATGC	1 cut(s)	555
MwoI	GCNNNNNNNGC	2 cut(s)	338, 497
NdeII	GATC	4 cut(s)	151, 306, 377, 403
NlaIII	CATG	2 cut(s)	83, 326
NlaIV	GGNNCC	1 cut(s)	308
NspI	RCATGY	1 cut(s)	83
PagI	TCATGA	1 cut(s)	322
PctI	GAATGC	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	4, 312
PshBI	ATTAAT	1 cut(s)	446
PspFI	CCCAGC	1 cut(s)	539
PspN4I	GGNNCC	1 cut(s)	308
PstNI	CAGNNNCTG	3 cut(s)	420, 539, 559
PsuI	RGATCY	2 cut(s)	306, 377
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	5 cut(s)	134, 197, 269, 317, 446
Sau3AI	GATC	4 cut(s)	151, 306, 377, 403
SduI	GDGCHC	2 cut(s)	334, 480
SfaNI	GCATC	3 cut(s)	487, 546, 591
SmiMI	CAYNNNNRTG	1 cut(s)	473
Sse9I	AATT	9 cut(s)	70, 130, 179, 206, 235, 265, 270, 443, 572
TaaI	ACNGT	1 cut(s)	507
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	1 cut(s)	450
TasI	AATT	9 cut(s)	70, 130, 179, 206, 235, 265, 270, 443, 572
TfiI	GAWTC	2 cut(s)	4, 312
Tru1I	TTAA	5 cut(s)	134, 197, 269, 317, 446
Tru9I	TTAA	5 cut(s)	134, 197, 269, 317, 446
TscAI	CASTG	6 cut(s)	145, 192, 250, 478, 498, 592
TspDTI	ATGAA	1 cut(s)	263
TspGWI	ACGGA	1 cut(s)	390
TspRI	CASTG	6 cut(s)	145, 192, 250, 478, 498, 592
VspI	ATTAAT	1 cut(s)	446
XapI	RAATTY	4 cut(s)	206, 235, 265, 572
XceI	RCATGY	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.