Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Forward (+)

20466816 .. 20470359

Gene Structure 3544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g19620.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGGACAGCAAAAGTGAATACGTCCGTTGCTTGAGCTTTGCATGTGAGGATACCCTTTATGTTTCAACAAACCACGGCTATCTGTACCATGCTAGATTATTGGACACTGGAGAAGTTGAATGGACTGAACTCGTCCGCCTCAGTCAGGAGGTCCAGATTGTTTGTATGGATTTGTTGTCAGAACCACTTGAACTTTGCTCCAGCATTGAGGACTGGGTTTCTGTTGGAGACGGAAAAGGAAACGTAACAATAGTTGGCGTTATACGTGATGCTTGTACTCCTAAAGTGGGTTTCTCCCTTACTTGGTCAGCTGGGATAGAGAGGCAACTCCTAGGAACACTTTGGTCCAAGTCACTAGGTTCTGGGTATATCTTCACCACTGATCCCAGAGGAACATTAAAGCTCTGGAGGTTGTCTGACCATTCTGCAAGGAGCTGCAATGTCTCTCTTATGGCAGAGTTCAAATCAATTTTCGGAACTCGAATAATGTGTTTGGATGCATTGTTGGAGGAAGAGGTATTGGTATGTGGAGATATACGTGGGAATCTTGTTTTGTTCCCCCTGTTGAAGAGTGTCTTGCATGGAACGGTAGAACCTAACATGAAAATATCTCCGTCCAATTACTTCAAAGGAGCTCATGGAATATCAAGTGTTTCAAGTCTGGCTGTTGCTAGACTAAGCTCCGAAAAGATTGAAATACGCTCGACAGGAGCAGATGGGTGTATATGCTATCTGGAGTATGAAAGAGATATGAAGAGTTTGCAATTTATAGGGATGAAACAAGTGAAAGAGTTGAGTCTTATTGAATCCGTTTCTGATAATAGCTCTGTTAATGAGTTGTCAACCTGTCATTGTGCTGCTGGTTTTGCATCAGTGGATTTTATAATTTGGAATTTAATAACTGAAACCAAGGTTGTCCAAATTCCATGTGGTGGATGGAGGCGGCCACATTCCTATTATCTTGGTGATATACCAGAAATAAAGAACTGTTTTGCATATGTTAAGGATGAGATCATTTATATCCGTAGGCGATGGGTTCTTGATGGTGAAAGGAAGATGCTCTCCAGGAATTTGCATATGCAATTTCATGGGAGAGAGATGCATTCCGTATGCTTTGTCTCTGAAGATTTGCAACCTGGAGTAGATGAGAAGTACAGCCTATTCACTGGATCTAGTTGGATGGCTAGTGGGTGTGAAGATGGAACTGTGAGGTTGACTAGGTATACGCCAGGTATTGAAAATTGGTCTGCATCAAAATTGCTTGGGGAGCATGTTGGTGGATCATCGGTGAGATCAATATGCTGTGTGTCAAAGTTATACATTGTTTCATCAGATGCGGCCAGCATAAATGAAAAAAATGCAGCAGCGGAGAACAGAGAAACTCCAGTTTTATTGATTTCAGTTGGTGCAAAGCGGGTCTTAACTTCTTGGCTACTAAGAAGTAATAAGGTGAACAAAAAGGATGAAATACTATCTGATCGAGCAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

497

Amino Acids

55.18

Weight (kDa)

5.95

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	884
AccB7I	CCANNNNNTGG	1 cut(s)	932
AccI	GTMKAC	1 cut(s)	1223
AciI	CCGC	5 cut(s)	136, 943, 1337, 1367, 1414
AclWI	GGATC	3 cut(s)	377, 1177, 1288
AcoI	YGGCCR	2 cut(s)	944, 1338
AcsI	RAATTY	3 cut(s)	892, 921, 1069
AcuI	CTGAAG	1 cut(s)	1143
AfaI	GTAC	3 cut(s)	86, 277, 1154
AfiI	CCNNNNNNNGG	4 cut(s)	145, 287, 303, 932
AjnI	CCWGG	3 cut(s)	1064, 1135, 1228
AluBI	AGCT	7 cut(s)	36, 311, 403, 435, 635, 681, 825
AluI	AGCT	7 cut(s)	36, 311, 403, 435, 635, 681, 825
Alw21I	GWGCWC	1 cut(s)	637
Alw26I	GTCTC	3 cut(s)	222, 448, 1123
AlwI	GGATC	3 cut(s)	377, 1177, 1288
AoxI	GGCC	2 cut(s)	944, 1338
ApeKI	GCWGC	5 cut(s)	435, 857, 1361, 1364, 1484
ApoI	RAATTY	3 cut(s)	892, 921, 1069
AspA2I	CCTAGG	1 cut(s)	331
AspS9I	GGNCC	2 cut(s)	151, 345
AsuHPI	GGTGA	5 cut(s)	367, 977, 1058, 1300, 1462
AvaII	GGWCC	2 cut(s)	151, 345
AvrII	CCTAGG	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	637
Bbv12I	GWGCWC	1 cut(s)	637
BbvI	GCAGC	4 cut(s)	422, 844, 1373, 1376
BccI	CCATC	6 cut(s)	710, 930, 1026, 1037, 1174, 1193
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	3 cut(s)	1066, 1137, 1230
BciVI	GTATCC	1 cut(s)	43
BcoDI	GTCTC	3 cut(s)	222, 448, 1123
BfaI	CTAG	7 cut(s)	93, 332, 356, 672, 1173, 1185, 1218
BfuI	GTATCC	1 cut(s)	43
BisI	GCNGC	7 cut(s)	436, 858, 944, 1338, 1362, 1365, 1485
BlnI	CCTAGG	1 cut(s)	331
BlsI	GCNGC	7 cut(s)	437, 859, 945, 1339, 1363, 1366, 1486
Bme1390I	CCNGG	3 cut(s)	1066, 1137, 1230
Bme18I	GGWCC	2 cut(s)	151, 345
BmgT120I	GGNCC	2 cut(s)	151, 345
BmrFI	CCNGG	3 cut(s)	1066, 1137, 1230
BmrI	ACTGGG	1 cut(s)	223
BmsI	GCATC	7 cut(s)	259, 487, 878, 1047, 1089, 1259, 1324
BmuI	ACTGGG	1 cut(s)	223
BpmI	CTGGAG	7 cut(s)	129, 184, 427, 755, 1048, 1158, 1368
BpuEI	CTTGAG	1 cut(s)	52
BsaAI	YACGTR	2 cut(s)	266, 539
BsaJI	CCNNGG	3 cut(s)	73, 331, 909
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 287, 303, 932
Bse1I	ACTGG	4 cut(s)	112, 218, 1171, 1385
Bse3DI	GCAATG	1 cut(s)	445
BseBI	CCWGG	3 cut(s)	1066, 1137, 1230
BseDI	CCNNGG	3 cut(s)	73, 331, 909
BseGI	GGATG	6 cut(s)	502, 780, 941, 1012, 1185, 1468
BseLI	CCNNNNNNNGG	4 cut(s)	145, 287, 303, 932
BseMI	GCAATG	1 cut(s)	445
BseMII	CTCAG	1 cut(s)	154
BseNI	ACTGG	4 cut(s)	112, 218, 1171, 1385
BseXI	GCAGC	4 cut(s)	422, 844, 1373, 1376
BseYI	CCCAGC	1 cut(s)	311
BshFI	GGCC	2 cut(s)	946, 1340
BsiHKAI	GWGCWC	1 cut(s)	637
BslI	CCNNNNNNNGG	4 cut(s)	145, 287, 303, 932
BsmAI	GTCTC	3 cut(s)	222, 448, 1123
BsmBI	CGTCTC	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	1102
BsnI	GGCC	2 cut(s)	946, 1340
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp143I	GATC	6 cut(s)	382, 1011, 1169, 1280, 1292, 1477
BspACI	CCGC	5 cut(s)	136, 943, 1337, 1367, 1414
BspANI	GGCC	2 cut(s)	946, 1340
BspCNI	CTCAG	1 cut(s)	153
BspPI	GGATC	3 cut(s)	377, 1177, 1288
BsrDI	GCAATG	1 cut(s)	445
BsrI	ACTGG	4 cut(s)	112, 218, 1171, 1385
BssECI	CCNNGG	3 cut(s)	73, 331, 909
BssMI	GATC	6 cut(s)	382, 1011, 1169, 1280, 1292, 1477
BssNAI	GTATAC	1 cut(s)	1224
BssT1I	CCWWGG	2 cut(s)	331, 909
Bst1107I	GTATAC	1 cut(s)	1224
Bst2UI	CCWGG	3 cut(s)	1066, 1137, 1230
Bst4CI	ACNGT	3 cut(s)	589, 989, 1207
Bst6I	CTCTTC	3 cut(s)	507, 563, 749
BstBAI	YACGTR	2 cut(s)	266, 539
BstC8I	GCNNGC	1 cut(s)	1342
BstDEI	CTNAG	3 cut(s)	140, 677, 1436
BstDSI	CCRYGG	1 cut(s)	73
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	6 cut(s)	502, 780, 941, 1012, 1185, 1468
BstKTI	GATC	6 cut(s)	385, 1014, 1172, 1283, 1295, 1480
BstMAI	GTCTC	3 cut(s)	222, 448, 1123
BstMBI	GATC	6 cut(s)	382, 1011, 1169, 1280, 1292, 1477
BstMWI	GCNNNNNNNGC	2 cut(s)	866, 1267
BstNI	CCWGG	3 cut(s)	1066, 1137, 1230
BstNSI	RCATGY	2 cut(s)	45, 1274
BstSCI	CCNGG	3 cut(s)	1064, 1135, 1228
BstV1I	GCAGC	4 cut(s)	422, 844, 1373, 1376
BstX2I	RGATCY	1 cut(s)	1169
BstYI	RGATCY	1 cut(s)	1169
BstZ17I	GTATAC	1 cut(s)	1224
BsuI	GTATCC	1 cut(s)	43
BsuRI	GGCC	2 cut(s)	946, 1340
BtgI	CCRYGG	1 cut(s)	73
BtgZI	GCGATG	1 cut(s)	1045
BtsCI	GGATG	6 cut(s)	502, 780, 941, 1012, 1185, 1468
BtsIMutI	CAGTG	4 cut(s)	105, 378, 879, 1164
Cac8I	GCNNGC	1 cut(s)	1342
Cfr13I	GGNCC	2 cut(s)	151, 345
Csp6I	GTAC	3 cut(s)	85, 276, 1153
CviAII	CATG	8 cut(s)	42, 89, 581, 601, 638, 927, 1088, 1271
CviQI	GTAC	3 cut(s)	85, 276, 1153
DdeI	CTNAG	3 cut(s)	140, 677, 1436
DpnI	GATC	6 cut(s)	384, 1013, 1171, 1282, 1294, 1479
DpnII	GATC	6 cut(s)	382, 1011, 1169, 1280, 1292, 1477
EaeI	YGGCCR	2 cut(s)	944, 1338
Eam1104I	CTCTTC	3 cut(s)	507, 563, 749
EarI	CTCTTC	3 cut(s)	507, 563, 749
EciI	GGCGGA	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	635
Eco130I	CCWWGG	2 cut(s)	331, 909
Eco24I	GRGCYC	1 cut(s)	637
Eco47I	GGWCC	2 cut(s)	151, 345
Eco53kI	GAGCTC	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	1143
EcoICRI	GAGCTC	1 cut(s)	635
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoRII	CCWGG	3 cut(s)	1064, 1135, 1228
EcoT14I	CCWWGG	2 cut(s)	331, 909
EcoT22I	ATGCAT	2 cut(s)	502, 1104
EcoT38I	GRGCYC	1 cut(s)	637
ErhI	CCWWGG	2 cut(s)	331, 909
Esp3I	CGTCTC	1 cut(s)	222
FaeI	CATG	8 cut(s)	45, 92, 584, 604, 641, 930, 1091, 1274
FalI	AAGNNNNNCTT	4 cut(s)	560, 592, 1403, 1435
FatI	CATG	8 cut(s)	41, 88, 580, 600, 637, 926, 1087, 1270
FauI	CCCGC	1 cut(s)	1407
FauNDI	CATATG	2 cut(s)	997, 1077
FblI	GTMKAC	1 cut(s)	1223
Fnu4HI	GCNGC	7 cut(s)	436, 858, 944, 1338, 1362, 1365, 1485
FokI	GGATG	6 cut(s)	509, 787, 948, 1019, 1192, 1475
FriOI	GRGCYC	1 cut(s)	637
Fsp4HI	GCNGC	7 cut(s)	436, 858, 944, 1338, 1362, 1365, 1485
FspBI	CTAG	7 cut(s)	93, 332, 356, 672, 1173, 1185, 1218
GluI	GCNGC	7 cut(s)	436, 858, 944, 1338, 1362, 1365, 1485
GsaI	CCCAGC	1 cut(s)	315
GsuI	CTGGAG	7 cut(s)	129, 184, 427, 755, 1048, 1158, 1368
HaeIII	GGCC	2 cut(s)	946, 1340
Hin1II	CATG	8 cut(s)	45, 92, 584, 604, 641, 930, 1091, 1274
HincII	GTYRAC	2 cut(s)	843, 1215
HindII	GTYRAC	2 cut(s)	843, 1215
HinfI	GANTC	3 cut(s)	544, 796, 806
HphI	GGTGA	5 cut(s)	367, 977, 1058, 1300, 1462
Hpy166II	GTNNAC	4 cut(s)	843, 1215, 1224, 1453
Hpy188I	TCNGA	8 cut(s)	181, 418, 476, 685, 817, 1123, 1333, 1477
Hpy188III	TCNNGA	5 cut(s)	146, 154, 406, 734, 1040
Hpy8I	GTNNAC	4 cut(s)	843, 1215, 1224, 1453
HpyCH4III	ACNGT	3 cut(s)	589, 989, 1207
HpyCH4IV	ACGT	4 cut(s)	21, 243, 265, 538
HpyF10VI	GCNNNNNNNGC	2 cut(s)	866, 1267
HpyF3I	CTNAG	3 cut(s)	140, 677, 1436
HpySE526I	ACGT	4 cut(s)	21, 243, 265, 538
Hsp92II	CATG	8 cut(s)	45, 92, 584, 604, 641, 930, 1091, 1274
Kzo9I	GATC	6 cut(s)	382, 1011, 1169, 1280, 1292, 1477
LmnI	GCTCC	6 cut(s)	203, 432, 632, 686, 710, 1267
Lsp1109I	GCAGC	4 cut(s)	422, 844, 1373, 1376
LweI	GCATC	7 cut(s)	259, 487, 878, 1047, 1089, 1259, 1324
MaeI	CTAG	7 cut(s)	93, 332, 356, 672, 1173, 1185, 1218
MaeII	ACGT	4 cut(s)	21, 243, 265, 538
MaeIII	GTNAC	2 cut(s)	244, 351
MalI	GATC	6 cut(s)	384, 1013, 1171, 1282, 1294, 1479
MboI	GATC	6 cut(s)	382, 1011, 1169, 1280, 1292, 1477
MboII	GAAGA	7 cut(s)	364, 524, 580, 766, 1066, 1136, 1208
MflI	RGATCY	1 cut(s)	1169
MhlI	GDGCHC	1 cut(s)	637
MlyI	GAGTC	1 cut(s)	805
MmeI	TCCRAC	3 cut(s)	205, 486, 1157
Mph1103I	ATGCAT	2 cut(s)	502, 1104
MseI	TTAA	5 cut(s)	398, 831, 896, 1002, 1421
MslI	CAYNNNNRTG	1 cut(s)	1275
MspA1I	CMGCKG	2 cut(s)	311, 1367
MspR9I	CCNGG	3 cut(s)	1066, 1137, 1230
Mva1269I	GAATGC	1 cut(s)	1102
MvaI	CCWGG	3 cut(s)	1066, 1137, 1230
MwoI	GCNNNNNNNGC	2 cut(s)	866, 1267
NdeI	CATATG	2 cut(s)	997, 1077
NdeII	GATC	6 cut(s)	382, 1011, 1169, 1280, 1292, 1477
NlaIII	CATG	8 cut(s)	45, 92, 584, 604, 641, 930, 1091, 1274
NmuCI	GTSAC	1 cut(s)	351
NsiI	ATGCAT	2 cut(s)	502, 1104
NspI	RCATGY	2 cut(s)	45, 1274
PctI	GAATGC	1 cut(s)	1102
PfeI	GAWTC	2 cut(s)	544, 806
PflMI	CCANNNNNTGG	1 cut(s)	932
PfoI	TCCNGGA	1 cut(s)	1064
PkrI	GCNGC	7 cut(s)	437, 859, 945, 1339, 1363, 1366, 1486
PleI	GAGTC	1 cut(s)	804
PpsI	GAGTC	1 cut(s)	804
Ppu21I	YACGTR	2 cut(s)	266, 539
PsiI	TTATAA	1 cut(s)	884
Psp124BI	GAGCTC	1 cut(s)	637
Psp6I	CCWGG	3 cut(s)	1064, 1135, 1228
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	3 cut(s)	1064, 1135, 1228
PspPI	GGNCC	2 cut(s)	151, 345
PsuI	RGATCY	1 cut(s)	1169
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	3 cut(s)	86, 277, 1154
RsaNI	GTAC	3 cut(s)	85, 276, 1153
RseI	CAYNNNNRTG	1 cut(s)	1275
SacI	GAGCTC	1 cut(s)	637
SaqAI	TTAA	5 cut(s)	398, 831, 896, 1002, 1421
SatI	GCNGC	7 cut(s)	436, 858, 944, 1338, 1362, 1365, 1485
Sau3AI	GATC	6 cut(s)	382, 1011, 1169, 1280, 1292, 1477
Sau96I	GGNCC	2 cut(s)	151, 345
SchI	GAGTC	1 cut(s)	805
ScrFI	CCNGG	3 cut(s)	1066, 1137, 1230
SduI	GDGCHC	1 cut(s)	637
SfaNI	GCATC	7 cut(s)	259, 487, 878, 1047, 1089, 1259, 1324
SinI	GGWCC	2 cut(s)	151, 345
SmiMI	CAYNNNNRTG	1 cut(s)	1275
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
SsiI	CCGC	5 cut(s)	136, 943, 1337, 1367, 1414
SspMI	CTAG	7 cut(s)	93, 332, 356, 672, 1173, 1185, 1218
SstI	GAGCTC	1 cut(s)	637
StyD4I	CCNGG	3 cut(s)	1064, 1135, 1228
StyI	CCWWGG	2 cut(s)	331, 909
TaaI	ACNGT	3 cut(s)	589, 989, 1207
TaiI	ACGT	4 cut(s)	24, 246, 268, 541
TaqI	TCGA	3 cut(s)	481, 704, 1480
TatI	WGTACW	2 cut(s)	275, 1152
TauI	GCSGC	2 cut(s)	946, 1340
TfiI	GAWTC	2 cut(s)	544, 806
Tru1I	TTAA	5 cut(s)	398, 831, 896, 1002, 1421
Tru9I	TTAA	5 cut(s)	398, 831, 896, 1002, 1421
TscAI	CASTG	4 cut(s)	112, 385, 879, 1171
TseFI	GTSAC	1 cut(s)	351
TseI	GCWGC	5 cut(s)	435, 857, 1361, 1364, 1484
Tsp45I	GTSAC	1 cut(s)	351
TspDTI	ATGAA	8 cut(s)	617, 756, 767, 791, 1076, 1317, 1365, 1479
TspGWI	ACGGA	6 cut(s)	14, 246, 603, 799, 1013, 1096
TspRI	CASTG	4 cut(s)	112, 385, 879, 1171
Van91I	CCANNNNNTGG	1 cut(s)	932
VpaK11BI	GGWCC	2 cut(s)	151, 345
XagI	CCTNNNNNAGG	1 cut(s)	143
XapI	RAATTY	3 cut(s)	892, 921, 1069
XceI	RCATGY	2 cut(s)	45, 1274
XcmI	CCANNNNNNNNNTGG	2 cut(s)	926, 933
XmaJI	CCTAGG	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	1223
XspI	CTAG	7 cut(s)	93, 332, 356, 672, 1173, 1185, 1218
Zsp2I	ATGCAT	2 cut(s)	502, 1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.