WD repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Beta-prop_WDR5 | PF25175 | 221 - 372 | 1.9e-13 | WDR5 beta-propeller domain |
| Beta-prop_WDR3_1st | PF25173 | 232 - 372 | 4.6e-14 | WDR3 first beta-propeller domain |
| WD40 | PF00400 | 246 - 280 | 9.8e-06 | WD domain, G-beta repeat |
| Beta-prop_THOC3 | PF25174 | 252 - 370 | 1.9e-10 | THOC3 beta-propeller domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 461 |
| Acc16I | TGCGCA | 1 cut(s) | 572 |
| AccB1I | GGYRCC | 3 cut(s) | 1375, 1569, 3401 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1133, 2162 |
| AccBSI | CCGCTC | 1 cut(s) | 24 |
| AccI | GTMKAC | 2 cut(s) | 2694, 3163 |
| AccII | CGCG | 2 cut(s) | 216, 1362 |
| AciI | CCGC | 8 cut(s) | 24, 234, 358, 541, 878, 2170, 2656, 2723 |
| AcoI | YGGCCR | 2 cut(s) | 132, 3323 |
| AcsI | RAATTY | 8 cut(s) | 1682, 1991, 2122, 2299, 3445, 3770, 3799, 4137 |
| AcuI | CTGAAG | 3 cut(s) | 2298, 3192, 3977 |
| AcyI | GRCGYC | 3 cut(s) | 34, 2173, 3988 |
| AfaI | GTAC | 7 cut(s) | 586, 850, 973, 1313, 1501, 2202, 2268 |
| AflIII | ACRYGT | 2 cut(s) | 1268, 2753 |
| AjnI | CCWGG | 3 cut(s) | 990, 2365, 3005 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 380, 412 |
| AleI | CACNNNNGTG | 1 cut(s) | 1567 |
| Alw21I | GWGCWC | 4 cut(s) | 832, 1026, 1564, 1864 |
| Alw26I | GTCTC | 8 cut(s) | 70, 1004, 1151, 1674, 2044, 2129, 2353, 2615 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 3984, 4103 |
| Ama87I | CYCGRG | 1 cut(s) | 915 |
| AoxI | GGCC | 6 cut(s) | 69, 132, 253, 988, 3323, 3612 |
| ApeKI | GCWGC | 8 cut(s) | 231, 337, 930, 1117, 2087, 2725, 2897, 3274 |
| ApoI | RAATTY | 8 cut(s) | 1682, 1991, 2122, 2299, 3445, 3770, 3799, 4137 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3615, 3647 |
| AseI | ATTAAT | 3 cut(s) | 327, 1142, 4010 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 729, 1248, 3511 |
| AspLEI | GCGC | 3 cut(s) | 239, 573, 1496 |
| AspS9I | GGNCC | 7 cut(s) | 70, 254, 783, 988, 1223, 2383, 3244 |
| AsuC2I | CCSGG | 1 cut(s) | 136 |
| AsuHPI | GGTGA | 8 cut(s) | 77, 89, 563, 974, 2207, 3114, 3585, 3722 |
| AsuII | TTCGAA | 1 cut(s) | 276 |
| AvaI | CYCGRG | 1 cut(s) | 915 |
| AvaII | GGWCC | 4 cut(s) | 783, 1223, 2383, 3244 |
| AxyI | CCTNAGG | 1 cut(s) | 258 |
| BaeGI | GKGCMC | 2 cut(s) | 916, 1811 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1323, 1356 |
| BamHI | GGATCC | 1 cut(s) | 3870 |
| BanI | GGYRCC | 3 cut(s) | 1375, 1569, 3401 |
| BanII | GRGCYC | 2 cut(s) | 1864, 3067 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3496, 3528 |
| BauI | CACGAG | 2 cut(s) | 28, 831 |
| BbsI | GAAGAC | 5 cut(s) | 2137, 2433, 3361, 3598, 3983 |
| Bbv12I | GWGCWC | 4 cut(s) | 832, 1026, 1564, 1864 |
| BbvI | GCAGC | 8 cut(s) | 218, 349, 917, 1104, 2074, 2737, 2909, 3286 |
| BceAI | ACGGC | 5 cut(s) | 1644, 3338, 3525, 3599, 3902 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 809, 843 |
| BciT130I | CCWGG | 3 cut(s) | 992, 2367, 3007 |
| BciVI | GTATCC | 2 cut(s) | 1208, 1324 |
| BclI | TGATCA | 4 cut(s) | 673, 1642, 2863, 3715 |
| BcnI | CCSGG | 1 cut(s) | 136 |
| BcoDI | GTCTC | 8 cut(s) | 70, 1004, 1151, 1674, 2044, 2129, 2353, 2615 |
| BfmI | CTRYAG | 5 cut(s) | 38, 2395, 2799, 3079, 3137 |
| BfoI | RGCGCY | 2 cut(s) | 240, 1497 |
| BfuI | GTATCC | 2 cut(s) | 1208, 1324 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3082 |
| BglII | AGATCT | 2 cut(s) | 2399, 3365 |
| BlpI | GCTNAGC | 1 cut(s) | 1320 |
| Bme1390I | CCNGG | 4 cut(s) | 136, 992, 2367, 3007 |
| Bme18I | GGWCC | 4 cut(s) | 783, 1223, 2383, 3244 |
| BmeT110I | CYCGRG | 1 cut(s) | 915 |
| BmgT120I | GGNCC | 7 cut(s) | 70, 254, 783, 988, 1223, 2383, 3244 |
| BmiI | GGNNCC | 8 cut(s) | 265, 621, 989, 1377, 1571, 3245, 3403, 3872 |
| BmrFI | CCNGG | 4 cut(s) | 136, 992, 2367, 3007 |
| BmrI | ACTGGG | 3 cut(s) | 182, 2385, 4156 |
| BmuI | ACTGGG | 3 cut(s) | 182, 2385, 4156 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2141 |
| BpiI | GAAGAC | 5 cut(s) | 2137, 2433, 3361, 3598, 3983 |
| BpmI | CTGGAG | 5 cut(s) | 1867, 1956, 2388, 2980, 3447 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3725 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1320 |
| Bpu14I | TTCGAA | 1 cut(s) | 276 |
| BpuMI | CCSGG | 1 cut(s) | 136 |
| BsaAI | YACGTR | 2 cut(s) | 1269, 1763 |
| BsaHI | GRCGYC | 3 cut(s) | 34, 2173, 3988 |
| BsaI | GGTCTC | 1 cut(s) | 2129 |
| BsaJI | CCNNGG | 7 cut(s) | 205, 220, 492, 1300, 1555, 2139, 2317 |
| BsaWI | WCCGGW | 1 cut(s) | 581 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1624, 1654, 2912, 2942, 3328, 3358 |
| Bse118I | RCCGGY | 1 cut(s) | 1572 |
| Bse21I | CCTNAGG | 1 cut(s) | 258 |
| Bse3DI | GCAATG | 1 cut(s) | 573 |
| BseBI | CCWGG | 3 cut(s) | 992, 2367, 3007 |
| BseDI | CCNNGG | 7 cut(s) | 205, 220, 492, 1300, 1555, 2139, 2317 |
| BseMI | GCAATG | 1 cut(s) | 573 |
| BseMII | CTCAG | 5 cut(s) | 249, 358, 507, 2124, 2364 |
| BseRI | GAGGAG | 3 cut(s) | 612, 1385, 1872 |
| BseSI | GKGCMC | 2 cut(s) | 916, 1811 |
| BseX3I | CGGCCG | 1 cut(s) | 3323 |
| BseXI | GCAGC | 8 cut(s) | 218, 349, 917, 1104, 2074, 2737, 2909, 3286 |
| BseYI | CCCAGC | 3 cut(s) | 1804, 2262, 4103 |
| BsgI | GTGCAG | 1 cut(s) | 1103 |
| Bsh1236I | CGCG | 2 cut(s) | 216, 1362 |
| Bsh1285I | CGRYCG | 2 cut(s) | 823, 3326 |
| BshFI | GGCC | 6 cut(s) | 71, 134, 255, 990, 3325, 3614 |
| BshNI | GGYRCC | 3 cut(s) | 1375, 1569, 3401 |
| BsiEI | CGRYCG | 2 cut(s) | 823, 3326 |
| BsiHKAI | GWGCWC | 4 cut(s) | 832, 1026, 1564, 1864 |
| BsiHKCI | CYCGRG | 1 cut(s) | 915 |
| BsiSI | CCGG | 4 cut(s) | 135, 582, 1573, 4124 |
| BslFI | GGGAC | 6 cut(s) | 938, 1161, 2746, 3118, 3257, 3881 |
| BsmAI | GTCTC | 8 cut(s) | 70, 1004, 1151, 1674, 2044, 2129, 2353, 2615 |
| BsmFI | GGGAC | 6 cut(s) | 938, 1161, 2746, 3118, 3257, 3881 |
| BsmI | GAATGC | 7 cut(s) | 210, 862, 2278, 2332, 2574, 3457, 4119 |
| BsnI | GGCC | 6 cut(s) | 71, 134, 255, 990, 3325, 3614 |
| Bso31I | GGTCTC | 1 cut(s) | 2129 |
| BsoBI | CYCGRG | 1 cut(s) | 915 |
| Bsp119I | TTCGAA | 1 cut(s) | 276 |
| Bsp1286I | GDGCHC | 7 cut(s) | 832, 916, 1026, 1564, 1811, 1864, 3067 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1320 |
| Bsp19I | CCATGG | 3 cut(s) | 220, 1300, 2317 |
| BspACI | CCGC | 8 cut(s) | 24, 234, 358, 541, 878, 2170, 2656, 2723 |
| BspANI | GGCC | 6 cut(s) | 71, 134, 255, 990, 3325, 3614 |
| BspCNI | CTCAG | 5 cut(s) | 250, 357, 508, 2125, 2363 |
| BspFNI | CGCG | 2 cut(s) | 216, 1362 |
| BspHI | TCATGA | 1 cut(s) | 3886 |
| BspLI | GGNNCC | 8 cut(s) | 265, 621, 989, 1377, 1571, 3245, 3403, 3872 |
| BspMAI | CTGCAG | 1 cut(s) | 42 |
| BspQI | GCTCTTC | 1 cut(s) | 14 |
| BspT104I | TTCGAA | 1 cut(s) | 276 |
| BspT107I | GGYRCC | 3 cut(s) | 1375, 1569, 3401 |
| BspTNI | GGTCTC | 1 cut(s) | 2129 |
| BsrBI | CCGCTC | 1 cut(s) | 24 |
| BsrDI | GCAATG | 1 cut(s) | 573 |
| BsrFI | RCCGGY | 1 cut(s) | 1572 |
| BssAI | RCCGGY | 1 cut(s) | 1572 |
| BssECI | CCNNGG | 7 cut(s) | 205, 220, 492, 1300, 1555, 2139, 2317 |
| BssNI | GRCGYC | 3 cut(s) | 34, 2173, 3988 |
| BssSI | CACGAG | 2 cut(s) | 28, 831 |
| BssT1I | CCWWGG | 6 cut(s) | 205, 220, 1300, 1555, 2139, 2317 |
| Bst2BI | CACGAG | 2 cut(s) | 28, 831 |
| Bst2UI | CCWGG | 3 cut(s) | 992, 2367, 3007 |
| Bst6I | CTCTTC | 3 cut(s) | 14, 1731, 1787 |
| BstACI | GRCGYC | 3 cut(s) | 34, 2173, 3988 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 373, 1117, 4061 |
| BstBAI | YACGTR | 2 cut(s) | 1269, 1763 |
| BstBI | TTCGAA | 1 cut(s) | 276 |
| BstC8I | GCNNGC | 7 cut(s) | 876, 1087, 1259, 2047, 2811, 2872, 3986 |
| BstDEI | CTNAG | 9 cut(s) | 258, 344, 516, 1320, 1904, 2133, 2350, 2678, 3725 |
| BstDSI | CCRYGG | 4 cut(s) | 220, 492, 1300, 2317 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3171 |
| BstFNI | CGCG | 2 cut(s) | 216, 1362 |
| BstH2I | RGCGCY | 2 cut(s) | 240, 1497 |
| BstHHI | GCGC | 3 cut(s) | 239, 573, 1496 |
| BstMAI | GTCTC | 8 cut(s) | 70, 1004, 1151, 1674, 2044, 2129, 2353, 2615 |
| BstMCI | CGRYCG | 2 cut(s) | 823, 3326 |
| BstNI | CCWGG | 3 cut(s) | 992, 2367, 3007 |
| BstNSI | RCATGY | 7 cut(s) | 1154, 2504, 2757, 3146, 3162, 3385, 3524 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2141 |
| BstSCI | CCNGG | 4 cut(s) | 134, 990, 2365, 3005 |
| BstSFI | CTRYAG | 5 cut(s) | 38, 2395, 2799, 3079, 3137 |
| BstSLI | GKGCMC | 2 cut(s) | 916, 1811 |
| BstUI | CGCG | 2 cut(s) | 216, 1362 |
| BstV1I | GCAGC | 8 cut(s) | 218, 349, 917, 1104, 2074, 2737, 2909, 3286 |
| BstV2I | GAAGAC | 5 cut(s) | 2137, 2433, 3361, 3598, 3983 |
| BstX2I | RGATCY | 3 cut(s) | 2399, 3365, 3870 |
| BstYI | RGATCY | 3 cut(s) | 2399, 3365, 3870 |
| BstZI | CGGCCG | 1 cut(s) | 3323 |
| Bsu36I | CCTNAGG | 1 cut(s) | 258 |
| BsuI | GTATCC | 2 cut(s) | 1208, 1324 |
| BsuRI | GGCC | 6 cut(s) | 71, 134, 255, 990, 3325, 3614 |
| BtgI | CCRYGG | 4 cut(s) | 220, 492, 1300, 2317 |
| BtgZI | GCGATG | 2 cut(s) | 1060, 2889 |
| BtsI | GCAGTG | 2 cut(s) | 664, 1599 |
| Cac8I | GCNNGC | 7 cut(s) | 876, 1087, 1259, 2047, 2811, 2872, 3986 |
| CaiI | CAGNNNCTG | 2 cut(s) | 3984, 4103 |
| CciI | TCATGA | 1 cut(s) | 3886 |
| CfoI | GCGC | 3 cut(s) | 239, 573, 1496 |
| Cfr10I | RCCGGY | 1 cut(s) | 1572 |
| Cfr13I | GGNCC | 7 cut(s) | 70, 254, 783, 988, 1223, 2383, 3244 |
| CseI | GACGC | 7 cut(s) | 23, 205, 532, 1351, 2162, 2268, 3977 |
| Csp6I | GTAC | 7 cut(s) | 585, 849, 972, 1312, 1500, 2201, 2267 |
| CviQI | GTAC | 7 cut(s) | 585, 849, 972, 1312, 1500, 2201, 2267 |
| DdeI | CTNAG | 9 cut(s) | 258, 344, 516, 1320, 1904, 2133, 2350, 2678, 3725 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 461 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 461 |
| EaeI | YGGCCR | 2 cut(s) | 132, 3323 |
| EagI | CGGCCG | 1 cut(s) | 3323 |
| Eam1104I | CTCTTC | 3 cut(s) | 14, 1731, 1787 |
| EarI | CTCTTC | 3 cut(s) | 14, 1731, 1787 |
| Ecl136II | GAGCTC | 1 cut(s) | 1862 |
| EclXI | CGGCCG | 1 cut(s) | 3323 |
| Eco130I | CCWWGG | 6 cut(s) | 205, 220, 1300, 1555, 2139, 2317 |
| Eco24I | GRGCYC | 2 cut(s) | 1864, 3067 |
| Eco31I | GGTCTC | 1 cut(s) | 2129 |
| Eco32I | GATATC | 2 cut(s) | 1872, 2242 |
| Eco47I | GGWCC | 4 cut(s) | 783, 1223, 2383, 3244 |
| Eco52I | CGGCCG | 1 cut(s) | 3323 |
| Eco53kI | GAGCTC | 1 cut(s) | 1862 |
| Eco57I | CTGAAG | 3 cut(s) | 2298, 3192, 3977 |
| Eco81I | CCTNAGG | 1 cut(s) | 258 |
| Eco88I | CYCGRG | 1 cut(s) | 915 |
| EcoICRI | GAGCTC | 1 cut(s) | 1862 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3171 |
| EcoO109I | RGGNCCY | 2 cut(s) | 988, 3244 |
| EcoRI | GAATTC | 1 cut(s) | 1682 |
| EcoRII | CCWGG | 3 cut(s) | 990, 2365, 3005 |
| EcoRV | GATATC | 2 cut(s) | 1872, 2242 |
| EcoT14I | CCWWGG | 6 cut(s) | 205, 220, 1300, 1555, 2139, 2317 |
| EcoT22I | ATGCAT | 4 cut(s) | 640, 864, 1726, 2334 |
| EcoT38I | GRGCYC | 2 cut(s) | 1864, 3067 |
| ErhI | CCWWGG | 6 cut(s) | 205, 220, 1300, 1555, 2139, 2317 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2204, 2236, 2645, 2677 |
| FaqI | GGGAC | 6 cut(s) | 938, 1161, 2746, 3118, 3257, 3881 |
| FauI | CCCGC | 1 cut(s) | 2649 |
| FauNDI | CATATG | 5 cut(s) | 1040, 2227, 2307, 2339, 3581 |
| FbaI | TGATCA | 4 cut(s) | 673, 1642, 2863, 3715 |
| FblI | GTMKAC | 2 cut(s) | 2694, 3163 |
| FriOI | GRGCYC | 2 cut(s) | 1864, 3067 |
| FspI | TGCGCA | 1 cut(s) | 572 |
| GlaI | GCGC | 3 cut(s) | 238, 572, 1495 |
| GsaI | CCCAGC | 3 cut(s) | 1808, 2266, 4107 |
| GsuI | CTGGAG | 5 cut(s) | 1867, 1956, 2388, 2980, 3447 |
| HaeII | RGCGCY | 2 cut(s) | 240, 1497 |
| HaeIII | GGCC | 6 cut(s) | 71, 134, 255, 990, 3325, 3614 |
| HapII | CCGG | 4 cut(s) | 135, 582, 1573, 4124 |
| HgaI | GACGC | 7 cut(s) | 23, 205, 532, 1351, 2162, 2268, 3977 |
| HhaI | GCGC | 3 cut(s) | 239, 573, 1496 |
| Hin1I | GRCGYC | 3 cut(s) | 34, 2173, 3988 |
| Hin6I | GCGC | 3 cut(s) | 237, 571, 1494 |
| HinP1I | GCGC | 3 cut(s) | 237, 571, 1494 |
| HincII | GTYRAC | 2 cut(s) | 2445, 4153 |
| HindII | GTYRAC | 2 cut(s) | 2445, 4153 |
| HindIII | AAGCTT | 2 cut(s) | 416, 3264 |
| HpaII | CCGG | 4 cut(s) | 135, 582, 1573, 4124 |
| HphI | GGTGA | 8 cut(s) | 77, 89, 563, 974, 2207, 3114, 3585, 3722 |
| Hpy166II | GTNNAC | 5 cut(s) | 2445, 2695, 3164, 3619, 4153 |
| Hpy8I | GTNNAC | 5 cut(s) | 2445, 2695, 3164, 3619, 4153 |
| Hpy99I | CGWCG | 2 cut(s) | 200, 2262 |
| HpyCH4IV | ACGT | 4 cut(s) | 198, 1122, 1268, 1762 |
| HpyF3I | CTNAG | 9 cut(s) | 258, 344, 516, 1320, 1904, 2133, 2350, 2678, 3725 |
| HpySE526I | ACGT | 4 cut(s) | 198, 1122, 1268, 1762 |
| Hsp92I | GRCGYC | 3 cut(s) | 34, 2173, 3988 |
| HspAI | GCGC | 3 cut(s) | 237, 571, 1494 |
| Ksp22I | TGATCA | 4 cut(s) | 673, 1642, 2863, 3715 |
| LguI | GCTCTTC | 1 cut(s) | 14 |
| LmnI | GCTCC | 8 cut(s) | 115, 625, 1021, 1559, 1859, 1937, 2497, 3498 |
| Lsp1109I | GCAGC | 8 cut(s) | 218, 349, 917, 1104, 2074, 2737, 2909, 3286 |
| MaeII | ACGT | 4 cut(s) | 198, 1122, 1268, 1762 |
| MaeIII | GTNAC | 9 cut(s) | 452, 905, 952, 1180, 1575, 1583, 1816, 2371, 2974 |
| MbiI | CCGCTC | 1 cut(s) | 24 |
| MfeI | CAATTG | 2 cut(s) | 1380, 3178 |
| MflI | RGATCY | 3 cut(s) | 2399, 3365, 3870 |
| MhlI | GDGCHC | 7 cut(s) | 832, 916, 1026, 1564, 1811, 1864, 3067 |
| MlyI | GAGTC | 7 cut(s) | 312, 875, 1088, 2032, 2617, 2777, 2915 |
| MmeI | TCCRAC | 4 cut(s) | 1429, 2387, 2651, 2864 |
| Mph1103I | ATGCAT | 4 cut(s) | 640, 864, 1726, 2334 |
| MroXI | GAANNNNTTC | 3 cut(s) | 729, 1248, 3511 |
| MslI | CAYNNNNRTG | 6 cut(s) | 249, 630, 1567, 2505, 2788, 4037 |
| MspA1I | CMGCKG | 6 cut(s) | 878, 959, 1117, 1535, 2516, 3277 |
| MspI | CCGG | 4 cut(s) | 135, 582, 1573, 4124 |
| MspR9I | CCNGG | 4 cut(s) | 136, 992, 2367, 3007 |
| MunI | CAATTG | 2 cut(s) | 1380, 3178 |
| Mva1269I | GAATGC | 7 cut(s) | 210, 862, 2278, 2332, 2574, 3457, 4119 |
| MvaI | CCWGG | 3 cut(s) | 992, 2367, 3007 |
| MvnI | CGCG | 2 cut(s) | 216, 1362 |
| NciI | CCSGG | 1 cut(s) | 136 |
| NcoI | CCATGG | 3 cut(s) | 220, 1300, 2317 |
| NdeI | CATATG | 5 cut(s) | 1040, 2227, 2307, 2339, 3581 |
| NlaIV | GGNNCC | 8 cut(s) | 265, 621, 989, 1377, 1571, 3245, 3403, 3872 |
| NmeAIII | GCCGAG | 2 cut(s) | 47, 3351 |
| NmuCI | GTSAC | 5 cut(s) | 452, 905, 952, 1575, 1816 |
| NsbI | TGCGCA | 1 cut(s) | 572 |
| NsiI | ATGCAT | 4 cut(s) | 640, 864, 1726, 2334 |
| NspI | RCATGY | 7 cut(s) | 1154, 2504, 2757, 3146, 3162, 3385, 3524 |
| NspV | TTCGAA | 1 cut(s) | 276 |
| OliI | CACNNNNGTG | 1 cut(s) | 1567 |
| PagI | TCATGA | 1 cut(s) | 3886 |
| PciI | ACATGT | 1 cut(s) | 2753 |
| PciSI | GCTCTTC | 1 cut(s) | 14 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 829, 1258 |
| PctI | GAATGC | 7 cut(s) | 210, 862, 2278, 2332, 2574, 3457, 4119 |
| PdmI | GAANNNNTTC | 3 cut(s) | 729, 1248, 3511 |
| PfeI | GAWTC | 3 cut(s) | 3545, 3566, 3876 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1133, 2162 |
| PfoI | TCCNGGA | 1 cut(s) | 3005 |
| Ple19I | CGATCG | 1 cut(s) | 823 |
| PleI | GAGTC | 7 cut(s) | 311, 875, 1088, 2031, 2617, 2776, 2915 |
| PpsI | GAGTC | 7 cut(s) | 311, 875, 1088, 2031, 2617, 2776, 2915 |
| Ppu21I | YACGTR | 2 cut(s) | 1269, 1763 |
| PpuMI | RGGWCCY | 1 cut(s) | 3244 |
| PscI | ACATGT | 1 cut(s) | 2753 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2141 |
| PshBI | ATTAAT | 3 cut(s) | 327, 1142, 4010 |
| Psp124BI | GAGCTC | 1 cut(s) | 1864 |
| Psp5II | RGGWCCY | 1 cut(s) | 3244 |
| Psp6I | CCWGG | 3 cut(s) | 990, 2365, 3005 |
| PspFI | CCCAGC | 3 cut(s) | 1804, 2262, 4103 |
| PspGI | CCWGG | 3 cut(s) | 990, 2365, 3005 |
| PspN4I | GGNNCC | 8 cut(s) | 265, 621, 989, 1377, 1571, 3245, 3403, 3872 |
| PspPI | GGNCC | 7 cut(s) | 70, 254, 783, 988, 1223, 2383, 3244 |
| PspPPI | RGGWCCY | 1 cut(s) | 3244 |
| PstI | CTGCAG | 1 cut(s) | 42 |
| PstNI | CAGNNNCTG | 2 cut(s) | 3984, 4103 |
| PsuI | RGATCY | 3 cut(s) | 2399, 3365, 3870 |
| PvuI | CGATCG | 1 cut(s) | 823 |
| PvuII | CAGCTG | 5 cut(s) | 959, 1117, 1535, 2516, 3277 |
| RsaI | GTAC | 7 cut(s) | 586, 850, 973, 1313, 1501, 2202, 2268 |
| RsaNI | GTAC | 7 cut(s) | 585, 849, 972, 1312, 1500, 2201, 2267 |
| RseI | CAYNNNNRTG | 6 cut(s) | 249, 630, 1567, 2505, 2788, 4037 |
| SacI | GAGCTC | 1 cut(s) | 1864 |
| SapI | GCTCTTC | 1 cut(s) | 14 |
| Sau96I | GGNCC | 7 cut(s) | 70, 254, 783, 988, 1223, 2383, 3244 |
| SchI | GAGTC | 7 cut(s) | 312, 875, 1088, 2032, 2617, 2777, 2915 |
| ScrFI | CCNGG | 4 cut(s) | 136, 992, 2367, 3007 |
| SduI | GDGCHC | 7 cut(s) | 832, 916, 1026, 1564, 1811, 1864, 3067 |
| SfcI | CTRYAG | 5 cut(s) | 38, 2395, 2799, 3079, 3137 |
| SfuI | TTCGAA | 1 cut(s) | 276 |
| SinI | GGWCC | 4 cut(s) | 783, 1223, 2383, 3244 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 249, 630, 1567, 2505, 2788, 4037 |
| SsiI | CCGC | 8 cut(s) | 24, 234, 358, 541, 878, 2170, 2656, 2723 |
| SspI | AATATT | 2 cut(s) | 1219, 2819 |
| SstI | GAGCTC | 1 cut(s) | 1864 |
| StyD4I | CCNGG | 4 cut(s) | 134, 990, 2365, 3005 |
| StyI | CCWWGG | 6 cut(s) | 205, 220, 1300, 1555, 2139, 2317 |
| TaiI | ACGT | 4 cut(s) | 201, 1125, 1271, 1765 |
| TaqI | TCGA | 8 cut(s) | 195, 276, 1931, 2257, 2850, 2924, 3667, 4014 |
| TatI | WGTACW | 2 cut(s) | 848, 971 |
| TauI | GCSGC | 4 cut(s) | 27, 237, 361, 2173 |
| TfiI | GAWTC | 3 cut(s) | 3545, 3566, 3876 |
| TseFI | GTSAC | 5 cut(s) | 452, 905, 952, 1575, 1816 |
| TseI | GCWGC | 8 cut(s) | 231, 337, 930, 1117, 2087, 2725, 2897, 3274 |
| Tsp45I | GTSAC | 5 cut(s) | 452, 905, 952, 1575, 1816 |
| TspGWI | ACGGA | 4 cut(s) | 799, 2445, 2547, 3954 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1133, 2162 |
| VpaK11BI | GGWCC | 4 cut(s) | 783, 1223, 2383, 3244 |
| VspI | ATTAAT | 3 cut(s) | 327, 1142, 4010 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3171 |
| XapI | RAATTY | 8 cut(s) | 1682, 1991, 2122, 2299, 3445, 3770, 3799, 4137 |
| XceI | RCATGY | 7 cut(s) | 1154, 2504, 2757, 3146, 3162, 3385, 3524 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2156, 2163 |
| XmiI | GTMKAC | 2 cut(s) | 2694, 3163 |
| XmnI | GAANNNNTTC | 3 cut(s) | 729, 1248, 3511 |
| Zsp2I | ATGCAT | 4 cut(s) | 640, 864, 1726, 2334 |