Rh3AG274900

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Reverse (-)
31553395 .. 31563012
9618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG274900.1

Sequence Viewer

Length: 4182 bp
ATGGCTACGGAGGAGAAGAAGAGCGGCTCGTGGCGTCTGCAAAGTGGTCAATATCTGGGAGAAGTGTCAGCCCTGTGTTTCCTTCACCTACCTTCTCACCTGTCAATAATAAGGGAGCTTCCTTATTTAGTGGCCGGGTCCGGTTCGCAAATCTTGGTCTATGATTTGGAGCTGGGAACAATGATGAGTTCGTTCGACGTTTTCCAAGGCATTCGCGTCCATGGGATTTGCTGCGGCGCTACTCATACTGATGGCCCGGAGAGTCAAGGTGTTGATTTCGAAATCGCTGTGTTTGGGGAAAGGAGAGTCAAGGTGTTTAGATTGGAGATTAATTTGGGGCAGCAAGTCAGCGTTGGTCTGAGGCTGTTGCACTTGTTACCTAACTTTGGGAATTGGGTTCTGGATGTTTCCTTCATCAAGCATGGGGAAGGTCAGTGTCTTGCTATTGGGTGTAGTGACAACTCTGTCCATCTTTGGGATGTATCTACTTCTACCGTGGTTCTTCAAGTTCAGCATCCTGAGAGGACGCTTCTGTATTCAATGCGGTTATGGGGTGAAACTATTGAAGCTCTGCGCATTGCATCCGGTACTATCTATAATGAGATCATTGTTTGGAAAGTGGCTTCTCAGTCTGATGCATCATGTTTGACAAGCCAAGTTGAACAGCACTTTGATCAAAGCAATTCGCTCTCAAACGGTGTTCAGCTTCATAATTGCCAGTATGAAGCTATTCATATTAGCAAACTTGCTGGACATGAAGGTTCAATTTTTCGCATATCGTGGTCCTCTGATGGATCAAAACTGGTTTCAGTATCTGACGATCGTAGTGCTCGTGTCTGGGCAGTTTGTACTGAAACGATGCATTCTAATAAGCCAGCAGACTCCATTGGGCTTATGTTATTTGGTCACAGTGCCCGAGTTTGGGACTGCTGCATTTTTGGATCGTTAATTGTCACAGCTGGTGAGGATTGTACTTGTCGTGTGTGGGGCCTGGATGGAAAACACCTAGAGACAATCAAGGAGCACATAGGAAGGGGCATATGGCGATGTTTGTATGATCCGAAATCTTCGCTTCTAATTACTGCTGGCTTTGACTCTGCAATTAAAGTGCATCAGCTGCACATTCCATTCTCTGGGGGATTAAAGGGACATGCAGAGACAAAACAAATCGGTGGAATAGTTACATACACAACTCGTATCCCTACTTTATCCGAGCATATTGGACCTATGGACAGCAAAAGTGAATATGTTCGTTGCTTGCGTTTTACATGTGAGGACACCCTTTATGTTTCCACAAACCATGGTTATATGTACCATGCTAAGCTATTGGATACCGAAGTAGAATGGACAAAACTTGTTCGCGTCAGTGAGGAGGTGCCAATTGTTTGCATGGATTTATTGTCAGAACCATTCAAACTTTCTTCTGGTGTTAAGGATTGGATTGCTGTTGGAGATGGTAAAGGAAACATGACAGTTGTTGGGGTTATATATGGTGCTTGTACCCCTAGAGTTGGTTTTGCCTTTACTTGGTCAGCTGGAATAGAAAGACAACTCCTTGGAGCACATTGGTGCCAGTCACTAGGTTACGGGTTCATCTTCACTGCTGATCCTAGAGGAACATTGAAGCTGTGGAGGCTGTGTGATCACTCTGCAACGAGCTGTGATGTGTCTCTTTTAGCTGAATTCACATCAAGTTTCGGAAGTAGAATAATGTGTTTAGATGCATCTTTGGAGGAAGAGGTATTGGTATGTGGAGATATACGTGGAAATCTTGTTTTGTTCCCTTTGTTGAAGAGTGTGTTGCTGGGCACATTGGTCACTTCTGATGTTAAAATATCTCCATCAAGTTGTTTCAGAGGAGCTCATGGGATATCAAGCATCTCCAGTGTTGCTGTTGCTAGACTAAGTAGTAATCAGATTGAAATATGCTCGACTGGAGCAGATGGGTGTATATGCTATCTGGAATATGACAAAGATAGGAAGGATTTGGAATTTATAGGGATGAAACAAGTGAAGGAGTTGAGTCTTATTCAATCTGTCTCTGCGTGCAATAGCTTTGTGAATGAGCCATCAAACTGTCATTATGCTGCTGGTTTTGCATCAGTGGATTTTATAATTTGGAATTTATTAACTGAGACCAAGGTCTTCCAAATCCCATGTGGTGGATGGCGGCGTCCTCATTCCTATTATCTTGGTGATGTACCAGAGATAAAGAACTGCTTTGCATATGTTAAGGATGATATCATTTATATTCATCGACGCTGGGTACTGAATGGTGAAGGGAAGGAACTCTCTAGGAATTTGCATATGCAATTCCATGGGAGAGAGATGCATTCCATATGCTTTGTCTCAGAAGAATTGCAACCTGGAGTAACTGGGAAGGACCATCTGCTCTATAGATCTAGTTGGATTGCAACTGGCTGTGAAGACGGAACTGTGAGGTTGACTAGGTATATGCCAGATGTTGATAATTGGTCTGGATCAAAATTGCTTGGGGAGCATGTTGGTGGATCAGCTGTGAGATCAATATGCTGTGTGTCAAAGATAAACATACTTCCGTCAGATATGACTGGCATTCCCAATATAAGAACTGCTAACAATGGAACAACAGAGAATAGAGAGACTCCAACTTTGTTGATTTCTGTTGGTGCAAAGCGGGTCTTGACTTCTTGGCTACTAAGAAGTAGGAAAGTAGACAAGAAGGAAGAAATAGTACGTGATCCGCAGCATGACAACACTGGAAATGGCAATACATGTTTGTCCCCAGAGTCGCCTTCAATGTCATTCCAGTGGCTTTCTACAGATATGCCAGCAAAATATTCTAGTATTCAAAAAGTTCCAACAAACATCGAGAAAAGAGCTGATCAAGCTGGCGATGCTGATGGTAAAGATGATGCAGCATCAGAAAAGGGAAACAAAGACTTGAACTCCTGCATTAAAGATAAATATGAAGATGACTGGAGATACATGGCTGTTACTGCTTTTCTTGTAAAGTGCGCCAATTCCAGGATAACTGTCTGTTTTATTGGTGTTGCTTGTTCTGATGCCACCCTTGCATTACGGGCTCTAGTTTTGCCCTATAGGCTATGGTTTGATGTTGCTTTTCTGTGTCCTCTATCATCACCAGTTCTGTCCCTACAGCATGTCATCCTTCCTGCATGTCTACCTTCTGAAGGCAATTGGCAGATTGGAAGTTTGTATATTCTCATCAGTGGGGCTACTGATGGAAGTATTGCCTTTTGGGACCTCACTAGAAGCATTGAAGCTTTTATGCAGCTGGTATCAGTGCTTGATACAGAAAAGTTCATTGACTGTCAGAAACGGCCGAGAACAGGGAGGGGAAGTCAGGGTGGAAGACGGTGGAGATCTTTAGACAGTAGAATGTCAAAGAATAGGCTAGGTGCCAGTTCTACTACTGTCAAAGCTGGAGTGGAAACTGATGAGAATTTGCCAAAGCATTCTGGGGATGGAACTTCATCAATGCTAAATGATAATGGGAGCAGTAGAACGGCTTCTTCACATGCTATTCATACTGCTTCCCTAGATTCAGAAGCAAGTGCTTATGATTCCTCATCGGACATATGTGAAATATCACCATTACTTGTCTTCAAGGCCATTCACAAATCTGGTGTCAATTCTCTCCACATTTCAAATGTAGAGGGTTGTCTAAGTCCTGAAATCGGTTTTCTCTATAATTTAATTAGTGGGGGTGATGATCAAGCCCTTAGCTGTCTTACATTTGAATTGTCATTGTCAACATTTAGCGCTGAATTTGATAATATGACACTGGAAATCAAAAATTCAATCACTGAACTTGGAAATGCAAAGAAGTTGGTTCATTCTAACCAAGACAAGAAGAAGAACTATTGGATCCGATTCTTAAATCATGATACAGTCCCCTCAGCTCACAGCTCTGCCGTAAAAGGTGTTTGGACAGACGGATCTTGGGTTTTTTCAACTGGTCTGGATCAGCGTGTCAGGTGCTGGCGTCTTCAGGAGGAAGGTAAATTAATCGAGTATGCTTATTTAGTCATCAGTGTGCCAGAGCCAGAAGCACTGGATGCTAAACTGTGTGGCAGGAACAAATATCAGATTGCTGTAGCTGGGAGGGGAATGCAGATGCTGGAGTTCTCTGAAATTCTGGCATCAGTTGATATAACCCAAACTAAAATGATTTTGTGA

Protein Analysis

1393

Amino Acids

153.68

Weight (kDa)

6.03

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 226 - 372 2.4e-13 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 232 - 372 1.2e-13 WDR3 first beta-propeller domain
WD40 PF00400 246 - 280 6.4e-06 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 252 - 370 2.2e-10 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2114
AasI GACNNNNNNGTC 1 cut(s) 464
Acc16I TGCGCA 1 cut(s) 575
AccB1I GGYRCC 3 cut(s) 1375, 1569, 3401
AccB7I CCANNNNNTGG 2 cut(s) 1133, 2162
AccBSI CCGCTC 1 cut(s) 24
AccI GTMKAC 2 cut(s) 2694, 3163
AccII CGCG 2 cut(s) 216, 1362
AciI CCGC 6 cut(s) 24, 234, 544, 2170, 2656, 2723
AcoI YGGCCR 2 cut(s) 132, 3323
AcsI RAATTY 8 cut(s) 1682, 1991, 2122, 2299, 3445, 3770, 3799, 4137
AcuI CTGAAG 2 cut(s) 3192, 3977
AcyI GRCGYC 3 cut(s) 34, 2173, 3988
AfaI GTAC 8 cut(s) 589, 850, 973, 1313, 1501, 2202, 2268, 2715
AfeI AGCGCT 1 cut(s) 3766
AflIII ACRYGT 2 cut(s) 1268, 2753
AjnI CCWGG 3 cut(s) 990, 2365, 3005
AleI CACNNNNGTG 1 cut(s) 1567
Alw21I GWGCWC 4 cut(s) 832, 1026, 1564, 1864
Alw26I GTCTC 7 cut(s) 1004, 1151, 1674, 2044, 2129, 2353, 2615
AlwNI CAGNNNCTG 3 cut(s) 815, 3984, 4123
Ama87I CYCGRG 1 cut(s) 915
Aor51HI AGCGCT 1 cut(s) 3766
AoxI GGCC 5 cut(s) 132, 253, 988, 3323, 3612
ApeKI GCWGC 8 cut(s) 231, 340, 930, 1117, 2087, 2725, 2897, 3274
ApoI RAATTY 8 cut(s) 1682, 1991, 2122, 2299, 3445, 3770, 3799, 4137
ArsI GACNNNNNNTTYG 4 cut(s) 2614, 2646, 3615, 3647
AseI ATTAAT 2 cut(s) 330, 4010
Asp700I GAANNNNTTC 3 cut(s) 729, 1248, 3511
AspLEI GCGC 4 cut(s) 239, 576, 2999, 3767
AspS9I GGNCC 7 cut(s) 138, 254, 783, 988, 1223, 2383, 3244
AsuC2I CCSGG 2 cut(s) 136, 257
AsuHPI GGTGA 9 cut(s) 77, 89, 566, 974, 2207, 2288, 3114, 3585, 3722
AsuII TTCGAA 1 cut(s) 279
AvaI CYCGRG 1 cut(s) 915
AvaII GGWCC 5 cut(s) 138, 783, 1223, 2383, 3244
BaeGI GKGCMC 2 cut(s) 916, 1811
BaeI ACNNNNGTAYC 2 cut(s) 1323, 1356
BamHI GGATCC 1 cut(s) 3870
BanI GGYRCC 3 cut(s) 1375, 1569, 3401
BanII GRGCYC 2 cut(s) 1864, 3067
BarI GAAGNNNNNNTAC 4 cut(s) 2697, 2729, 3496, 3528
BauI CACGAG 2 cut(s) 28, 831
BbsI GAAGAC 5 cut(s) 2137, 2433, 3361, 3598, 3983
Bbv12I GWGCWC 4 cut(s) 832, 1026, 1564, 1864
BbvCI CCTCAGC 1 cut(s) 3901
BbvI GCAGC 8 cut(s) 218, 352, 917, 1104, 2074, 2737, 2909, 3286
BceAI ACGGC 3 cut(s) 3338, 3525, 3902
BcgI CGANNNNNNTGC 2 cut(s) 809, 843
BciT130I CCWGG 3 cut(s) 992, 2367, 3007
BciVI GTATCC 2 cut(s) 1208, 1324
BclI TGATCA 4 cut(s) 673, 1642, 2863, 3715
BcnI CCSGG 2 cut(s) 136, 257
BcoDI GTCTC 7 cut(s) 1004, 1151, 1674, 2044, 2129, 2353, 2615
BfmI CTRYAG 5 cut(s) 2395, 2799, 3079, 3137, 4098
BfoI RGCGCY 2 cut(s) 240, 3768
BfuI GTATCC 2 cut(s) 1208, 1324
BglI GCCNNNNNGGC 1 cut(s) 3082
BglII AGATCT 2 cut(s) 2399, 3365
BlpI GCTNAGC 1 cut(s) 1320
Bme1390I CCNGG 5 cut(s) 136, 257, 992, 2367, 3007
Bme18I GGWCC 5 cut(s) 138, 783, 1223, 2383, 3244
BmeT110I CYCGRG 1 cut(s) 915
BmgT120I GGNCC 7 cut(s) 138, 254, 783, 988, 1223, 2383, 3244
BmiI GGNNCC 7 cut(s) 139, 989, 1377, 1571, 3245, 3403, 3872
BmrFI CCNGG 5 cut(s) 136, 257, 992, 2367, 3007
BmrI ACTGGG 1 cut(s) 2385
BmuI ACTGGG 1 cut(s) 2385
BoxI GACNNNNGTC 1 cut(s) 2141
BpiI GAAGAC 5 cut(s) 2137, 2433, 3361, 3598, 3983
BpmI CTGGAG 6 cut(s) 1867, 1956, 2388, 2980, 3447, 4145
Bpu10I CCTNAGC 2 cut(s) 3725, 3901
Bpu1102I GCTNAGC 1 cut(s) 1320
Bpu14I TTCGAA 1 cut(s) 279
BpuMI CCSGG 2 cut(s) 136, 257
BsaAI YACGTR 2 cut(s) 1763, 2717
BsaHI GRCGYC 3 cut(s) 34, 2173, 3988
BsaI GGTCTC 1 cut(s) 2129
BsaJI CCNNGG 7 cut(s) 205, 220, 495, 1300, 1555, 2139, 2317
BsaWI WCCGGW 2 cut(s) 140, 584
BsaXI ACNNNNNCTCC 6 cut(s) 1624, 1654, 2912, 2942, 3328, 3358
Bse3DI GCAATG 1 cut(s) 576
BseBI CCWGG 3 cut(s) 992, 2367, 3007
BseDI CCNNGG 7 cut(s) 205, 220, 495, 1300, 1555, 2139, 2317
BseMI GCAATG 1 cut(s) 576
BseMII CTCAG 6 cut(s) 350, 510, 641, 2124, 2364, 3915
BseRI GAGGAG 3 cut(s) 26, 1385, 1872
BseSI GKGCMC 2 cut(s) 916, 1811
BseX3I CGGCCG 1 cut(s) 3323
BseXI GCAGC 8 cut(s) 218, 352, 917, 1104, 2074, 2737, 2909, 3286
BseYI CCCAGC 4 cut(s) 172, 1804, 2262, 4103
BsgI GTGCAG 1 cut(s) 1103
Bsh1236I CGCG 2 cut(s) 216, 1362
Bsh1285I CGRYCG 2 cut(s) 823, 3326
BshFI GGCC 5 cut(s) 134, 255, 990, 3325, 3614
BshNI GGYRCC 3 cut(s) 1375, 1569, 3401
BsiEI CGRYCG 2 cut(s) 823, 3326
BsiHKAI GWGCWC 4 cut(s) 832, 1026, 1564, 1864
BsiHKCI CYCGRG 1 cut(s) 915
BsiSI CCGG 4 cut(s) 135, 141, 257, 585
BslFI GGGAC 6 cut(s) 938, 1161, 2746, 3118, 3257, 3881
BsmAI GTCTC 7 cut(s) 1004, 1151, 1674, 2044, 2129, 2353, 2615
BsmFI GGGAC 6 cut(s) 938, 1161, 2746, 3118, 3257, 3881
BsmI GAATGC 6 cut(s) 210, 862, 2332, 2574, 3457, 4119
BsnI GGCC 5 cut(s) 134, 255, 990, 3325, 3614
Bso31I GGTCTC 1 cut(s) 2129
BsoBI CYCGRG 1 cut(s) 915
Bsp119I TTCGAA 1 cut(s) 279
Bsp1286I GDGCHC 7 cut(s) 832, 916, 1026, 1564, 1811, 1864, 3067
Bsp1720I GCTNAGC 1 cut(s) 1320
Bsp19I CCATGG 3 cut(s) 220, 1300, 2317
BspACI CCGC 6 cut(s) 24, 234, 544, 2170, 2656, 2723
BspANI GGCC 5 cut(s) 134, 255, 990, 3325, 3614
BspCNI CTCAG 6 cut(s) 351, 511, 640, 2125, 2363, 3914
BspFNI CGCG 2 cut(s) 216, 1362
BspHI TCATGA 1 cut(s) 3886
BspLI GGNNCC 7 cut(s) 139, 989, 1377, 1571, 3245, 3403, 3872
BspQI GCTCTTC 1 cut(s) 14
BspT104I TTCGAA 1 cut(s) 279
BspT107I GGYRCC 3 cut(s) 1375, 1569, 3401
BspTNI GGTCTC 1 cut(s) 2129
BsrBI CCGCTC 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 576
BssECI CCNNGG 7 cut(s) 205, 220, 495, 1300, 1555, 2139, 2317
BssNI GRCGYC 3 cut(s) 34, 2173, 3988
BssSI CACGAG 2 cut(s) 28, 831
BssT1I CCWWGG 6 cut(s) 205, 220, 1300, 1555, 2139, 2317
Bst2BI CACGAG 2 cut(s) 28, 831
Bst2UI CCWGG 3 cut(s) 992, 2367, 3007
Bst6I CTCTTC 3 cut(s) 14, 1731, 1787
BstACI GRCGYC 3 cut(s) 34, 2173, 3988
BstAPI GCANNNNNTGC 2 cut(s) 1117, 4061
BstBAI YACGTR 2 cut(s) 1763, 2717
BstBI TTCGAA 1 cut(s) 279
BstC8I GCNNGC 7 cut(s) 876, 1087, 1259, 2047, 2811, 2872, 3986
BstDSI CCRYGG 4 cut(s) 220, 495, 1300, 2317
BstENI CCTNNNNNAGG 1 cut(s) 3171
BstFNI CGCG 2 cut(s) 216, 1362
BstH2I RGCGCY 2 cut(s) 240, 3768
BstHHI GCGC 4 cut(s) 239, 576, 2999, 3767
BstMAI GTCTC 7 cut(s) 1004, 1151, 1674, 2044, 2129, 2353, 2615
BstMCI CGRYCG 2 cut(s) 823, 3326
BstNI CCWGG 3 cut(s) 992, 2367, 3007
BstNSI RCATGY 7 cut(s) 1154, 1272, 2504, 2757, 3146, 3162, 3524
BstPAI GACNNNNGTC 1 cut(s) 2141
BstSCI CCNGG 5 cut(s) 134, 255, 990, 2365, 3005
BstSFI CTRYAG 5 cut(s) 2395, 2799, 3079, 3137, 4098
BstSLI GKGCMC 2 cut(s) 916, 1811
BstUI CGCG 2 cut(s) 216, 1362
BstV1I GCAGC 8 cut(s) 218, 352, 917, 1104, 2074, 2737, 2909, 3286
BstV2I GAAGAC 5 cut(s) 2137, 2433, 3361, 3598, 3983
BstX2I RGATCY 4 cut(s) 2399, 3365, 3870, 3941
BstYI RGATCY 4 cut(s) 2399, 3365, 3870, 3941
BstZI CGGCCG 1 cut(s) 3323
BsuI GTATCC 2 cut(s) 1208, 1324
BsuRI GGCC 5 cut(s) 134, 255, 990, 3325, 3614
BtgI CCRYGG 4 cut(s) 220, 495, 1300, 2317
BtgZI GCGATG 2 cut(s) 1060, 2889
BtsI GCAGTG 1 cut(s) 1599
Cac8I GCNNGC 7 cut(s) 876, 1087, 1259, 2047, 2811, 2872, 3986
CaiI CAGNNNCTG 3 cut(s) 815, 3984, 4123
CciI TCATGA 1 cut(s) 3886
CfoI GCGC 4 cut(s) 239, 576, 2999, 3767
Cfr13I GGNCC 7 cut(s) 138, 254, 783, 988, 1223, 2383, 3244
CseI GACGC 7 cut(s) 23, 205, 535, 1351, 2162, 2268, 3977
Csp6I GTAC 8 cut(s) 588, 849, 972, 1312, 1500, 2201, 2267, 2714
CviQI GTAC 8 cut(s) 588, 849, 972, 1312, 1500, 2201, 2267, 2714
DrdI GACNNNNNNGTC 1 cut(s) 464
DseDI GACNNNNNNGTC 1 cut(s) 464
EaeI YGGCCR 2 cut(s) 132, 3323
EagI CGGCCG 1 cut(s) 3323
Eam1104I CTCTTC 3 cut(s) 14, 1731, 1787
EarI CTCTTC 3 cut(s) 14, 1731, 1787
Ecl136II GAGCTC 1 cut(s) 1862
EclXI CGGCCG 1 cut(s) 3323
Eco130I CCWWGG 6 cut(s) 205, 220, 1300, 1555, 2139, 2317
Eco24I GRGCYC 2 cut(s) 1864, 3067
Eco31I GGTCTC 1 cut(s) 2129
Eco32I GATATC 2 cut(s) 1872, 2242
Eco47I GGWCC 5 cut(s) 138, 783, 1223, 2383, 3244
Eco47III AGCGCT 1 cut(s) 3766
Eco52I CGGCCG 1 cut(s) 3323
Eco53kI GAGCTC 1 cut(s) 1862
Eco57I CTGAAG 2 cut(s) 3192, 3977
Eco88I CYCGRG 1 cut(s) 915
EcoICRI GAGCTC 1 cut(s) 1862
EcoNI CCTNNNNNAGG 1 cut(s) 3171
EcoO109I RGGNCCY 2 cut(s) 988, 3244
EcoRI GAATTC 1 cut(s) 1682
EcoRII CCWGG 3 cut(s) 990, 2365, 3005
EcoRV GATATC 2 cut(s) 1872, 2242
EcoT14I CCWWGG 6 cut(s) 205, 220, 1300, 1555, 2139, 2317
EcoT22I ATGCAT 4 cut(s) 640, 864, 1726, 2334
EcoT38I GRGCYC 2 cut(s) 1864, 3067
ErhI CCWWGG 6 cut(s) 205, 220, 1300, 1555, 2139, 2317
FalI AAGNNNNNCTT 4 cut(s) 2204, 2236, 2645, 2677
FaqI GGGAC 6 cut(s) 938, 1161, 2746, 3118, 3257, 3881
FauI CCCGC 1 cut(s) 2649
FauNDI CATATG 5 cut(s) 1040, 2227, 2307, 2339, 3581
FbaI TGATCA 4 cut(s) 673, 1642, 2863, 3715
FblI GTMKAC 2 cut(s) 2694, 3163
FriOI GRGCYC 2 cut(s) 1864, 3067
FspI TGCGCA 1 cut(s) 575
GlaI GCGC 4 cut(s) 238, 575, 2998, 3766
GsaI CCCAGC 4 cut(s) 176, 1808, 2266, 4107
GsuI CTGGAG 6 cut(s) 1867, 1956, 2388, 2980, 3447, 4145
HaeII RGCGCY 2 cut(s) 240, 3768
HaeIII GGCC 5 cut(s) 134, 255, 990, 3325, 3614
HapII CCGG 4 cut(s) 135, 141, 257, 585
HgaI GACGC 7 cut(s) 23, 205, 535, 1351, 2162, 2268, 3977
HhaI GCGC 4 cut(s) 239, 576, 2999, 3767
Hin1I GRCGYC 3 cut(s) 34, 2173, 3988
Hin6I GCGC 4 cut(s) 237, 574, 2997, 3765
HinP1I GCGC 4 cut(s) 237, 574, 2997, 3765
HincII GTYRAC 2 cut(s) 2445, 3756
HindII GTYRAC 2 cut(s) 2445, 3756
HindIII AAGCTT 1 cut(s) 3264
HpaII CCGG 4 cut(s) 135, 141, 257, 585
HphI GGTGA 9 cut(s) 77, 89, 566, 974, 2207, 2288, 3114, 3585, 3722
Hpy166II GTNNAC 4 cut(s) 2445, 2695, 3164, 3756
Hpy8I GTNNAC 4 cut(s) 2445, 2695, 3164, 3756
Hpy99I CGWCG 2 cut(s) 200, 2262
HpyCH4IV ACGT 3 cut(s) 198, 1762, 2716
HpySE526I ACGT 3 cut(s) 198, 1762, 2716
Hsp92I GRCGYC 3 cut(s) 34, 2173, 3988
HspAI GCGC 4 cut(s) 237, 574, 2997, 3765
Ksp22I TGATCA 4 cut(s) 673, 1642, 2863, 3715
LguI GCTCTTC 1 cut(s) 14
LmnI GCTCC 8 cut(s) 115, 169, 1021, 1559, 1859, 1937, 2497, 3498
Lsp1109I GCAGC 8 cut(s) 218, 352, 917, 1104, 2074, 2737, 2909, 3286
MaeII ACGT 3 cut(s) 198, 1762, 2716
MbiI CCGCTC 1 cut(s) 24
MfeI CAATTG 2 cut(s) 1380, 3178
MflI RGATCY 4 cut(s) 2399, 3365, 3870, 3941
MhlI GDGCHC 7 cut(s) 832, 916, 1026, 1564, 1811, 1864, 3067
MlyI GAGTC 7 cut(s) 271, 315, 875, 1088, 2032, 2617, 2777
MmeI TCCRAC 4 cut(s) 1429, 2387, 2651, 2864
Mph1103I ATGCAT 4 cut(s) 640, 864, 1726, 2334
MroXI GAANNNNTTC 3 cut(s) 729, 1248, 3511
MslI CAYNNNNRTG 5 cut(s) 249, 1567, 2505, 2788, 4037
MspA1I CMGCKG 5 cut(s) 959, 1117, 1535, 2516, 3277
MspI CCGG 4 cut(s) 135, 141, 257, 585
MspR9I CCNGG 5 cut(s) 136, 257, 992, 2367, 3007
MunI CAATTG 2 cut(s) 1380, 3178
Mva1269I GAATGC 6 cut(s) 210, 862, 2332, 2574, 3457, 4119
MvaI CCWGG 3 cut(s) 992, 2367, 3007
MvnI CGCG 2 cut(s) 216, 1362
NciI CCSGG 2 cut(s) 136, 257
NcoI CCATGG 3 cut(s) 220, 1300, 2317
NdeI CATATG 5 cut(s) 1040, 2227, 2307, 2339, 3581
NlaIV GGNNCC 7 cut(s) 139, 989, 1377, 1571, 3245, 3403, 3872
NmeAIII GCCGAG 1 cut(s) 3351
NmuCI GTSAC 5 cut(s) 455, 905, 952, 1575, 1816
NsbI TGCGCA 1 cut(s) 575
NsiI ATGCAT 4 cut(s) 640, 864, 1726, 2334
NspI RCATGY 7 cut(s) 1154, 1272, 2504, 2757, 3146, 3162, 3524
NspV TTCGAA 1 cut(s) 279
OliI CACNNNNGTG 1 cut(s) 1567
PagI TCATGA 1 cut(s) 3886
PciI ACATGT 2 cut(s) 1268, 2753
PciSI GCTCTTC 1 cut(s) 14
PcsI WCGNNNNNNNCGW 2 cut(s) 829, 1258
PctI GAATGC 6 cut(s) 210, 862, 2332, 2574, 3457, 4119
PdmI GAANNNNTTC 3 cut(s) 729, 1248, 3511
PfeI GAWTC 3 cut(s) 3545, 3566, 3876
PflMI CCANNNNNTGG 2 cut(s) 1133, 2162
PfoI TCCNGGA 1 cut(s) 3005
Ple19I CGATCG 1 cut(s) 823
PleI GAGTC 7 cut(s) 270, 314, 875, 1088, 2031, 2617, 2776
PpsI GAGTC 7 cut(s) 270, 314, 875, 1088, 2031, 2617, 2776
Ppu21I YACGTR 2 cut(s) 1763, 2717
PpuMI RGGWCCY 1 cut(s) 3244
PscI ACATGT 2 cut(s) 1268, 2753
PshAI GACNNNNGTC 1 cut(s) 2141
PshBI ATTAAT 2 cut(s) 330, 4010
PsiI TTATAA 1 cut(s) 2114
Psp124BI GAGCTC 1 cut(s) 1864
Psp5II RGGWCCY 1 cut(s) 3244
Psp6I CCWGG 3 cut(s) 990, 2365, 3005
PspFI CCCAGC 4 cut(s) 172, 1804, 2262, 4103
PspGI CCWGG 3 cut(s) 990, 2365, 3005
PspN4I GGNNCC 7 cut(s) 139, 989, 1377, 1571, 3245, 3403, 3872
PspPI GGNCC 7 cut(s) 138, 254, 783, 988, 1223, 2383, 3244
PspPPI RGGWCCY 1 cut(s) 3244
PstNI CAGNNNCTG 3 cut(s) 815, 3984, 4123
PsuI RGATCY 4 cut(s) 2399, 3365, 3870, 3941
PvuI CGATCG 1 cut(s) 823
PvuII CAGCTG 5 cut(s) 959, 1117, 1535, 2516, 3277
RsaI GTAC 8 cut(s) 589, 850, 973, 1313, 1501, 2202, 2268, 2715
RsaNI GTAC 8 cut(s) 588, 849, 972, 1312, 1500, 2201, 2267, 2714
RseI CAYNNNNRTG 5 cut(s) 249, 1567, 2505, 2788, 4037
SacI GAGCTC 1 cut(s) 1864
SapI GCTCTTC 1 cut(s) 14
Sau96I GGNCC 7 cut(s) 138, 254, 783, 988, 1223, 2383, 3244
SchI GAGTC 7 cut(s) 271, 315, 875, 1088, 2032, 2617, 2777
ScrFI CCNGG 5 cut(s) 136, 257, 992, 2367, 3007
SduI GDGCHC 7 cut(s) 832, 916, 1026, 1564, 1811, 1864, 3067
SfcI CTRYAG 5 cut(s) 2395, 2799, 3079, 3137, 4098
SfuI TTCGAA 1 cut(s) 279
SinI GGWCC 5 cut(s) 138, 783, 1223, 2383, 3244
SmiMI CAYNNNNRTG 5 cut(s) 249, 1567, 2505, 2788, 4037
SsiI CCGC 6 cut(s) 24, 234, 544, 2170, 2656, 2723
SspI AATATT 1 cut(s) 2819
SstI GAGCTC 1 cut(s) 1864
StyD4I CCNGG 5 cut(s) 134, 255, 990, 2365, 3005
StyI CCWWGG 6 cut(s) 205, 220, 1300, 1555, 2139, 2317
TaiI ACGT 3 cut(s) 201, 1765, 2719
TaqI TCGA 6 cut(s) 195, 279, 1931, 2257, 2850, 4014
TatI WGTACW 2 cut(s) 848, 971
TauI GCSGC 3 cut(s) 27, 237, 2173
TfiI GAWTC 3 cut(s) 3545, 3566, 3876
TseFI GTSAC 5 cut(s) 455, 905, 952, 1575, 1816
TseI GCWGC 8 cut(s) 231, 340, 930, 1117, 2087, 2725, 2897, 3274
Tsp45I GTSAC 5 cut(s) 455, 905, 952, 1575, 1816
TspGWI ACGGA 4 cut(s) 23, 2445, 2547, 3954
Van91I CCANNNNNTGG 2 cut(s) 1133, 2162
VpaK11BI GGWCC 5 cut(s) 138, 783, 1223, 2383, 3244
VspI ATTAAT 2 cut(s) 330, 4010
XagI CCTNNNNNAGG 1 cut(s) 3171
XapI RAATTY 8 cut(s) 1682, 1991, 2122, 2299, 3445, 3770, 3799, 4137
XceI RCATGY 7 cut(s) 1154, 1272, 2504, 2757, 3146, 3162, 3524
XcmI CCANNNNNNNNNTGG 2 cut(s) 2156, 2163
XmiI GTMKAC 2 cut(s) 2694, 3163
XmnI GAANNNNTTC 3 cut(s) 729, 1248, 3511
Zsp2I ATGCAT 4 cut(s) 640, 864, 1726, 2334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.