Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Forward (+)

34098920 .. 34100467

Gene Structure 1548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1281800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGATCAAGCGCTTAGTTGTCTTACGTTTGAATTTACAAAAAAAAATTATTCACTCTGGTCAAGGCAAGAACTATTGGATCAGATTCGTAAATCATGATAAGGTCCCCTCAGCTCATAGCTCTGCTGTAAAAGGTGTTTGGACAGACGGATCTTGGGTTTTTTCCACTGGTCTTGATCAACGTGTTAGGTGCTGGCGTCTTGAGGATGAAGGCAAACTAATTGAGGGTGCTTATTTCATCATAAGTGTGCCAGAGCCAGAAGCACTGGATGCTAAATTGTGTGGCAGGAACCATTATCAGATTGCAGTGGCTGGAAGAGGAATGCAAATGCTTGAGTTCTCTGAATCTTCTAATGTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

121

Amino Acids

13.6

Weight (kDa)

9.26

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	86, 157
AcsI	RAATTY	1 cut(s)	31
AcyI	GRCGYC	1 cut(s)	196
AfeI	AGCGCT	1 cut(s)	11
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	31
AluBI	AGCT	2 cut(s)	113, 120
AluI	AGCT	2 cut(s)	113, 120
AlwI	GGATC	2 cut(s)	86, 157
AlwNI	CAGNNNCTG	1 cut(s)	311
Aor51HI	AGCGCT	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	103
BbvCI	CCTCAGC	1 cut(s)	109
BclI	TGATCA	2 cut(s)	3, 175
BfoI	RGCGCY	1 cut(s)	13
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	2 cut(s)	105, 290
BmsI	GCATC	1 cut(s)	259
Bpu10I	CCTNAGC	1 cut(s)	109
BpuEI	CTTGAG	2 cut(s)	221, 353
BsaHI	GRCGYC	1 cut(s)	196
Bse1I	ACTGG	2 cut(s)	172, 270
BseGI	GGATG	2 cut(s)	211, 274
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	2 cut(s)	172, 270
BslFI	GGGAC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	327
Bsp143I	GATC	4 cut(s)	3, 78, 149, 175
BspCNI	CTCAG	1 cut(s)	122
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	105, 290
BspPI	GGATC	2 cut(s)	86, 157
BsrI	ACTGG	2 cut(s)	172, 270
BssMI	GATC	4 cut(s)	3, 78, 149, 175
BssNI	GRCGYC	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	310
BstACI	GRCGYC	1 cut(s)	196
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	13, 109
BstF5I	GGATG	2 cut(s)	211, 274
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	4 cut(s)	6, 81, 152, 178
BstMBI	GATC	4 cut(s)	3, 78, 149, 175
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	211, 274
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	3 cut(s)	165, 263, 312
Cac8I	GCNNGC	1 cut(s)	194
CaiI	CAGNNNCTG	1 cut(s)	311
CciI	TCATGA	1 cut(s)	94
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	103
CseI	GACGC	1 cut(s)	185
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	4 cut(s)	113, 120, 256, 311
CviKI_1	RGCY	4 cut(s)	113, 120, 256, 311
DdeI	CTNAG	2 cut(s)	13, 109
DpnI	GATC	4 cut(s)	5, 80, 151, 177
DpnII	GATC	4 cut(s)	3, 78, 149, 175
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	103
Eco47III	AGCGCT	1 cut(s)	11
EcoO109I	RGGNCCY	1 cut(s)	103
FaeI	CATG	1 cut(s)	98
FaiI	YATR	3 cut(s)	96, 117, 242
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	1 cut(s)	94
FbaI	TGATCA	2 cut(s)	3, 175
FokI	GGATG	2 cut(s)	218, 281
GlaI	GCGC	1 cut(s)	11
HaeII	RGCGCY	1 cut(s)	13
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	12
Hin1I	GRCGYC	1 cut(s)	196
Hin1II	CATG	1 cut(s)	98
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HinfI	GANTC	2 cut(s)	84, 344
Hpy188I	TCNGA	3 cut(s)	83, 300, 343
Hpy188III	TCNNGA	3 cut(s)	95, 173, 200
HpyAV	CCTTC	1 cut(s)	203
HpyCH4IV	ACGT	2 cut(s)	25, 181
HpyCH4V	TGCA	2 cut(s)	305, 325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	2 cut(s)	13, 109
HpySE526I	ACGT	2 cut(s)	25, 181
Hsp92I	GRCGYC	1 cut(s)	196
Hsp92II	CATG	1 cut(s)	98
HspAI	GCGC	1 cut(s)	10
Ksp22I	TGATCA	2 cut(s)	3, 175
Kzo9I	GATC	4 cut(s)	3, 78, 149, 175
LpnPI	CCDG	8 cut(s)	42, 153, 178, 251, 264, 270, 271, 297
LweI	GCATC	1 cut(s)	259
MaeII	ACGT	2 cut(s)	25, 181
MalI	GATC	4 cut(s)	5, 80, 151, 177
MboI	GATC	4 cut(s)	3, 78, 149, 175
MboII	GAAGA	2 cut(s)	327, 339
MflI	RGATCY	1 cut(s)	149
MluCI	AATT	4 cut(s)	31, 45, 219, 275
MnlI	CCTC	4 cut(s)	118, 196, 217, 311
MslI	CAYNNNNRTG	1 cut(s)	245
Mva1269I	GAATGC	1 cut(s)	327
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeII	GATC	4 cut(s)	3, 78, 149, 175
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	2 cut(s)	105, 290
PagI	TCATGA	1 cut(s)	94
PctI	GAATGC	1 cut(s)	327
PfeI	GAWTC	2 cut(s)	84, 344
PpuMI	RGGWCCY	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	103
PspN4I	GGNNCC	2 cut(s)	105, 290
PspPI	GGNCC	1 cut(s)	103
PspPPI	RGGWCCY	1 cut(s)	103
PstNI	CAGNNNCTG	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	149
RseI	CAYNNNNRTG	1 cut(s)	245
Sau3AI	GATC	4 cut(s)	3, 78, 149, 175
Sau96I	GGNCC	1 cut(s)	103
SetI	ASST	7 cut(s)	28, 105, 115, 122, 136, 184, 191
SfaNI	GCATC	1 cut(s)	259
SinI	GGWCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	2 cut(s)	200, 332
SmoI	CTYRAG	2 cut(s)	200, 332
Sse9I	AATT	4 cut(s)	31, 45, 219, 275
TaiI	ACGT	2 cut(s)	28, 184
TasI	AATT	4 cut(s)	31, 45, 219, 275
TfiI	GAWTC	2 cut(s)	84, 344
TscAI	CASTG	3 cut(s)	172, 270, 312
TspDTI	ATGAA	2 cut(s)	222, 226
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	3 cut(s)	172, 270, 312
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.