WD repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Beta-prop_WDR5 | PF25175 | 226 - 372 | 3e-13 | WDR5 beta-propeller domain |
| Beta-prop_WDR3_1st | PF25173 | 232 - 372 | 1.5e-13 | WDR3 first beta-propeller domain |
| WD40 | PF00400 | 246 - 280 | 9.9e-06 | WD domain, G-beta repeat |
| Beta-prop_THOC3 | PF25174 | 252 - 370 | 4.4e-10 | THOC3 beta-propeller domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2111 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 461 |
| Acc16I | TGCGCA | 1 cut(s) | 572 |
| AccB1I | GGYRCC | 3 cut(s) | 1375, 1569, 3398 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1133, 2159 |
| AccBSI | CCGCTC | 1 cut(s) | 24 |
| AccI | GTMKAC | 2 cut(s) | 2691, 3160 |
| AccII | CGCG | 2 cut(s) | 216, 1362 |
| AciI | CCGC | 8 cut(s) | 24, 234, 541, 667, 878, 2167, 2653, 2720 |
| AcoI | YGGCCR | 2 cut(s) | 132, 3320 |
| AcsI | RAATTY | 8 cut(s) | 1682, 1988, 2119, 2296, 3442, 3767, 3796, 4134 |
| AcuI | CTGAAG | 2 cut(s) | 3189, 3974 |
| AcyI | GRCGYC | 3 cut(s) | 34, 2170, 3985 |
| AfaI | GTAC | 9 cut(s) | 586, 850, 973, 1187, 1313, 1501, 2199, 2265, 2712 |
| AflIII | ACRYGT | 2 cut(s) | 1268, 2750 |
| AjnI | CCWGG | 4 cut(s) | 396, 990, 2362, 3002 |
| AleI | CACNNNNGTG | 1 cut(s) | 1567 |
| Alw21I | GWGCWC | 4 cut(s) | 832, 1026, 1564, 1864 |
| Alw26I | GTCTC | 7 cut(s) | 1004, 1151, 1674, 2041, 2126, 2350, 2612 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 55, 3981, 4120 |
| Ama87I | CYCGRG | 1 cut(s) | 915 |
| AoxI | GGCC | 5 cut(s) | 132, 253, 988, 3320, 3609 |
| ApeKI | GCWGC | 8 cut(s) | 231, 337, 930, 1117, 2084, 2722, 2894, 3271 |
| ApoI | RAATTY | 8 cut(s) | 1682, 1988, 2119, 2296, 3442, 3767, 3796, 4134 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3612, 3644 |
| AseI | ATTAAT | 2 cut(s) | 327, 4007 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 729, 1248, 3508 |
| AspLEI | GCGC | 3 cut(s) | 239, 573, 1496 |
| AspS9I | GGNCC | 7 cut(s) | 254, 394, 783, 988, 1223, 2380, 3241 |
| AsuC2I | CCSGG | 2 cut(s) | 136, 257 |
| AsuII | TTCGAA | 1 cut(s) | 276 |
| AvaI | CYCGRG | 1 cut(s) | 915 |
| AvaII | GGWCC | 5 cut(s) | 394, 783, 1223, 2380, 3241 |
| BaeGI | GKGCMC | 2 cut(s) | 916, 1811 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1323, 1356 |
| BamHI | GGATCC | 1 cut(s) | 3867 |
| BanI | GGYRCC | 3 cut(s) | 1375, 1569, 3398 |
| BanII | GRGCYC | 2 cut(s) | 1864, 3064 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2694, 2726, 3493, 3525 |
| BauI | CACGAG | 2 cut(s) | 28, 831 |
| BbsI | GAAGAC | 4 cut(s) | 2134, 2430, 3595, 3980 |
| Bbv12I | GWGCWC | 4 cut(s) | 832, 1026, 1564, 1864 |
| BbvCI | CCTCAGC | 2 cut(s) | 3722, 3898 |
| BbvI | GCAGC | 8 cut(s) | 218, 349, 917, 1104, 2071, 2734, 2906, 3283 |
| BceAI | ACGGC | 2 cut(s) | 3335, 3522 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 809, 843, 1798, 1832 |
| BciT130I | CCWGG | 4 cut(s) | 398, 992, 2364, 3004 |
| BciVI | GTATCC | 2 cut(s) | 1208, 1324 |
| BclI | TGATCA | 4 cut(s) | 673, 1642, 2860, 3712 |
| BcnI | CCSGG | 2 cut(s) | 136, 257 |
| BcoDI | GTCTC | 7 cut(s) | 1004, 1151, 1674, 2041, 2126, 2350, 2612 |
| BfmI | CTRYAG | 6 cut(s) | 38, 2392, 2796, 3076, 3134, 4095 |
| BfoI | RGCGCY | 2 cut(s) | 240, 1497 |
| BfuI | GTATCC | 2 cut(s) | 1208, 1324 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3079 |
| BglII | AGATCT | 2 cut(s) | 2396, 3362 |
| BlpI | GCTNAGC | 1 cut(s) | 1320 |
| Bme1390I | CCNGG | 6 cut(s) | 136, 257, 398, 992, 2364, 3004 |
| Bme18I | GGWCC | 5 cut(s) | 394, 783, 1223, 2380, 3241 |
| BmeT110I | CYCGRG | 1 cut(s) | 915 |
| BmgT120I | GGNCC | 7 cut(s) | 254, 394, 783, 988, 1223, 2380, 3241 |
| BmiI | GGNNCC | 9 cut(s) | 265, 395, 621, 989, 1377, 1571, 3242, 3400, 3869 |
| BmrFI | CCNGG | 6 cut(s) | 136, 257, 398, 992, 2364, 3004 |
| BmrI | ACTGGG | 2 cut(s) | 182, 2382 |
| BmuI | ACTGGG | 2 cut(s) | 182, 2382 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2138 |
| BpiI | GAAGAC | 4 cut(s) | 2134, 2430, 3595, 3980 |
| BpmI | CTGGAG | 6 cut(s) | 1867, 1953, 2385, 2977, 3444, 4142 |
| Bpu10I | CCTNAGC | 2 cut(s) | 3722, 3898 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1320 |
| Bpu14I | TTCGAA | 1 cut(s) | 276 |
| BpuMI | CCSGG | 2 cut(s) | 136, 257 |
| BsaAI | YACGTR | 3 cut(s) | 1185, 1763, 2714 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2095 |
| BsaHI | GRCGYC | 3 cut(s) | 34, 2170, 3985 |
| BsaI | GGTCTC | 1 cut(s) | 2126 |
| BsaJI | CCNNGG | 7 cut(s) | 205, 220, 492, 1300, 1555, 2136, 2314 |
| BsaWI | WCCGGW | 1 cut(s) | 581 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1624, 1654, 2909, 2939, 3325, 3355 |
| Bse118I | RCCGGY | 2 cut(s) | 717, 874 |
| Bse3DI | GCAATG | 1 cut(s) | 573 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2095 |
| BseBI | CCWGG | 4 cut(s) | 398, 992, 2364, 3004 |
| BseDI | CCNNGG | 7 cut(s) | 205, 220, 492, 1300, 1555, 2136, 2314 |
| BseJI | GATNNNNATC | 1 cut(s) | 2095 |
| BseMI | GCAATG | 1 cut(s) | 573 |
| BseMII | CTCAG | 7 cut(s) | 347, 507, 638, 2121, 2361, 3736, 3912 |
| BseRI | GAGGAG | 5 cut(s) | 26, 612, 1385, 1544, 1872 |
| BseSI | GKGCMC | 2 cut(s) | 916, 1811 |
| BseX3I | CGGCCG | 1 cut(s) | 3320 |
| BseXI | GCAGC | 8 cut(s) | 218, 349, 917, 1104, 2071, 2734, 2906, 3283 |
| BseYI | CCCAGC | 3 cut(s) | 1804, 2259, 4100 |
| BsgI | GTGCAG | 1 cut(s) | 1103 |
| Bsh1236I | CGCG | 2 cut(s) | 216, 1362 |
| Bsh1285I | CGRYCG | 2 cut(s) | 823, 3323 |
| BshFI | GGCC | 5 cut(s) | 134, 255, 990, 3322, 3611 |
| BshNI | GGYRCC | 3 cut(s) | 1375, 1569, 3398 |
| BsiEI | CGRYCG | 2 cut(s) | 823, 3323 |
| BsiHKAI | GWGCWC | 4 cut(s) | 832, 1026, 1564, 1864 |
| BsiHKCI | CYCGRG | 1 cut(s) | 915 |
| BsiSI | CCGG | 5 cut(s) | 135, 257, 582, 718, 875 |
| BslFI | GGGAC | 6 cut(s) | 938, 1161, 2743, 2979, 3115, 3254 |
| BsmAI | GTCTC | 7 cut(s) | 1004, 1151, 1674, 2041, 2126, 2350, 2612 |
| BsmFI | GGGAC | 6 cut(s) | 938, 1161, 2743, 2979, 3115, 3254 |
| BsmI | GAATGC | 6 cut(s) | 210, 862, 2329, 2571, 3454, 4116 |
| BsnI | GGCC | 5 cut(s) | 134, 255, 990, 3322, 3611 |
| Bso31I | GGTCTC | 1 cut(s) | 2126 |
| BsoBI | CYCGRG | 1 cut(s) | 915 |
| Bsp119I | TTCGAA | 1 cut(s) | 276 |
| Bsp1286I | GDGCHC | 7 cut(s) | 832, 916, 1026, 1564, 1811, 1864, 3064 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1320 |
| Bsp19I | CCATGG | 3 cut(s) | 220, 1300, 2314 |
| BspACI | CCGC | 8 cut(s) | 24, 234, 541, 667, 878, 2167, 2653, 2720 |
| BspANI | GGCC | 5 cut(s) | 134, 255, 990, 3322, 3611 |
| BspCNI | CTCAG | 7 cut(s) | 348, 508, 637, 2122, 2360, 3735, 3911 |
| BspFNI | CGCG | 2 cut(s) | 216, 1362 |
| BspHI | TCATGA | 1 cut(s) | 3883 |
| BspLI | GGNNCC | 9 cut(s) | 265, 395, 621, 989, 1377, 1571, 3242, 3400, 3869 |
| BspMAI | CTGCAG | 1 cut(s) | 42 |
| BspQI | GCTCTTC | 1 cut(s) | 14 |
| BspT104I | TTCGAA | 1 cut(s) | 276 |
| BspT107I | GGYRCC | 3 cut(s) | 1375, 1569, 3398 |
| BspTNI | GGTCTC | 1 cut(s) | 2126 |
| BsrBI | CCGCTC | 1 cut(s) | 24 |
| BsrDI | GCAATG | 1 cut(s) | 573 |
| BsrFI | RCCGGY | 2 cut(s) | 717, 874 |
| BssAI | RCCGGY | 2 cut(s) | 717, 874 |
| BssECI | CCNNGG | 7 cut(s) | 205, 220, 492, 1300, 1555, 2136, 2314 |
| BssNI | GRCGYC | 3 cut(s) | 34, 2170, 3985 |
| BssSI | CACGAG | 2 cut(s) | 28, 831 |
| BssT1I | CCWWGG | 5 cut(s) | 205, 220, 1300, 2136, 2314 |
| Bst2BI | CACGAG | 2 cut(s) | 28, 831 |
| Bst2UI | CCWGG | 4 cut(s) | 398, 992, 2364, 3004 |
| Bst6I | CTCTTC | 3 cut(s) | 14, 1731, 1787 |
| BstACI | GRCGYC | 3 cut(s) | 34, 2170, 3985 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 373, 1117, 4058 |
| BstBAI | YACGTR | 3 cut(s) | 1185, 1763, 2714 |
| BstBI | TTCGAA | 1 cut(s) | 276 |
| BstC8I | GCNNGC | 7 cut(s) | 876, 1087, 1259, 2044, 2808, 2869, 3983 |
| BstDSI | CCRYGG | 4 cut(s) | 220, 492, 1300, 2314 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3168 |
| BstFNI | CGCG | 2 cut(s) | 216, 1362 |
| BstH2I | RGCGCY | 2 cut(s) | 240, 1497 |
| BstHHI | GCGC | 3 cut(s) | 239, 573, 1496 |
| BstMAI | GTCTC | 7 cut(s) | 1004, 1151, 1674, 2041, 2126, 2350, 2612 |
| BstMCI | CGRYCG | 2 cut(s) | 823, 3323 |
| BstNI | CCWGG | 4 cut(s) | 398, 992, 2364, 3004 |
| BstNSI | RCATGY | 8 cut(s) | 1154, 1272, 2501, 2754, 3143, 3159, 3382, 3521 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2138 |
| BstSCI | CCNGG | 6 cut(s) | 134, 255, 396, 990, 2362, 3002 |
| BstSFI | CTRYAG | 6 cut(s) | 38, 2392, 2796, 3076, 3134, 4095 |
| BstSLI | GKGCMC | 2 cut(s) | 916, 1811 |
| BstSNI | TACGTA | 1 cut(s) | 1185 |
| BstUI | CGCG | 2 cut(s) | 216, 1362 |
| BstV1I | GCAGC | 8 cut(s) | 218, 349, 917, 1104, 2071, 2734, 2906, 3283 |
| BstV2I | GAAGAC | 4 cut(s) | 2134, 2430, 3595, 3980 |
| BstX2I | RGATCY | 4 cut(s) | 2396, 3362, 3867, 3938 |
| BstYI | RGATCY | 4 cut(s) | 2396, 3362, 3867, 3938 |
| BstZI | CGGCCG | 1 cut(s) | 3320 |
| BsuI | GTATCC | 2 cut(s) | 1208, 1324 |
| BsuRI | GGCC | 5 cut(s) | 134, 255, 990, 3322, 3611 |
| BtgI | CCRYGG | 4 cut(s) | 220, 492, 1300, 2314 |
| BtgZI | GCGATG | 2 cut(s) | 1060, 2886 |
| BtsI | GCAGTG | 1 cut(s) | 1599 |
| Cac8I | GCNNGC | 7 cut(s) | 876, 1087, 1259, 2044, 2808, 2869, 3983 |
| CaiI | CAGNNNCTG | 3 cut(s) | 55, 3981, 4120 |
| CciI | TCATGA | 1 cut(s) | 3883 |
| CfoI | GCGC | 3 cut(s) | 239, 573, 1496 |
| Cfr10I | RCCGGY | 2 cut(s) | 717, 874 |
| Cfr13I | GGNCC | 7 cut(s) | 254, 394, 783, 988, 1223, 2380, 3241 |
| CseI | GACGC | 7 cut(s) | 23, 205, 532, 1351, 2159, 2265, 3974 |
| Csp6I | GTAC | 9 cut(s) | 585, 849, 972, 1186, 1312, 1500, 2198, 2264, 2711 |
| CviQI | GTAC | 9 cut(s) | 585, 849, 972, 1186, 1312, 1500, 2198, 2264, 2711 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 461 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 461 |
| EaeI | YGGCCR | 2 cut(s) | 132, 3320 |
| EagI | CGGCCG | 1 cut(s) | 3320 |
| Eam1104I | CTCTTC | 3 cut(s) | 14, 1731, 1787 |
| EarI | CTCTTC | 3 cut(s) | 14, 1731, 1787 |
| EciI | GGCGGA | 1 cut(s) | 893 |
| Ecl136II | GAGCTC | 1 cut(s) | 1862 |
| EclXI | CGGCCG | 1 cut(s) | 3320 |
| Eco105I | TACGTA | 1 cut(s) | 1185 |
| Eco130I | CCWWGG | 5 cut(s) | 205, 220, 1300, 2136, 2314 |
| Eco24I | GRGCYC | 2 cut(s) | 1864, 3064 |
| Eco31I | GGTCTC | 1 cut(s) | 2126 |
| Eco32I | GATATC | 2 cut(s) | 1872, 2239 |
| Eco47I | GGWCC | 5 cut(s) | 394, 783, 1223, 2380, 3241 |
| Eco52I | CGGCCG | 1 cut(s) | 3320 |
| Eco53kI | GAGCTC | 1 cut(s) | 1862 |
| Eco57I | CTGAAG | 2 cut(s) | 3189, 3974 |
| Eco88I | CYCGRG | 1 cut(s) | 915 |
| EcoICRI | GAGCTC | 1 cut(s) | 1862 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3168 |
| EcoO109I | RGGNCCY | 3 cut(s) | 394, 988, 3241 |
| EcoRI | GAATTC | 1 cut(s) | 1682 |
| EcoRII | CCWGG | 4 cut(s) | 396, 990, 2362, 3002 |
| EcoRV | GATATC | 2 cut(s) | 1872, 2239 |
| EcoT14I | CCWWGG | 5 cut(s) | 205, 220, 1300, 2136, 2314 |
| EcoT22I | ATGCAT | 4 cut(s) | 640, 864, 1726, 2331 |
| EcoT38I | GRGCYC | 2 cut(s) | 1864, 3064 |
| ErhI | CCWWGG | 5 cut(s) | 205, 220, 1300, 2136, 2314 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2201, 2233, 2642, 2674 |
| FaqI | GGGAC | 6 cut(s) | 938, 1161, 2743, 2979, 3115, 3254 |
| FauI | CCCGC | 1 cut(s) | 2646 |
| FauNDI | CATATG | 5 cut(s) | 1040, 2224, 2304, 2336, 3578 |
| FbaI | TGATCA | 4 cut(s) | 673, 1642, 2860, 3712 |
| FblI | GTMKAC | 2 cut(s) | 2691, 3160 |
| FriOI | GRGCYC | 2 cut(s) | 1864, 3064 |
| FspI | TGCGCA | 1 cut(s) | 572 |
| GlaI | GCGC | 3 cut(s) | 238, 572, 1495 |
| GsaI | CCCAGC | 3 cut(s) | 1808, 2263, 4104 |
| GsuI | CTGGAG | 6 cut(s) | 1867, 1953, 2385, 2977, 3444, 4142 |
| HaeII | RGCGCY | 2 cut(s) | 240, 1497 |
| HaeIII | GGCC | 5 cut(s) | 134, 255, 990, 3322, 3611 |
| HapII | CCGG | 5 cut(s) | 135, 257, 582, 718, 875 |
| HgaI | GACGC | 7 cut(s) | 23, 205, 532, 1351, 2159, 2265, 3974 |
| HhaI | GCGC | 3 cut(s) | 239, 573, 1496 |
| Hin1I | GRCGYC | 3 cut(s) | 34, 2170, 3985 |
| Hin6I | GCGC | 3 cut(s) | 237, 571, 1494 |
| HinP1I | GCGC | 3 cut(s) | 237, 571, 1494 |
| HincII | GTYRAC | 2 cut(s) | 2442, 3753 |
| HindII | GTYRAC | 2 cut(s) | 2442, 3753 |
| HindIII | AAGCTT | 1 cut(s) | 3261 |
| HpaII | CCGG | 5 cut(s) | 135, 257, 582, 718, 875 |
| Hpy166II | GTNNAC | 5 cut(s) | 1188, 2442, 2692, 3161, 3753 |
| Hpy188III | TCNNGA | 9 cut(s) | 515, 1958, 2475, 2659, 2848, 3671, 3884, 3962, 3992 |
| Hpy8I | GTNNAC | 5 cut(s) | 1188, 2442, 2692, 3161, 3753 |
| Hpy99I | CGWCG | 2 cut(s) | 200, 2259 |
| HpyCH4IV | ACGT | 4 cut(s) | 198, 1184, 1762, 2713 |
| HpySE526I | ACGT | 4 cut(s) | 198, 1184, 1762, 2713 |
| Hsp92I | GRCGYC | 3 cut(s) | 34, 2170, 3985 |
| HspAI | GCGC | 3 cut(s) | 237, 571, 1494 |
| KroI | GCCGGC | 1 cut(s) | 874 |
| KroNI | GCCGGC | 1 cut(s) | 876 |
| Ksp22I | TGATCA | 4 cut(s) | 673, 1642, 2860, 3712 |
| LguI | GCTCTTC | 1 cut(s) | 14 |
| LmnI | GCTCC | 8 cut(s) | 115, 625, 1021, 1559, 1859, 1934, 2494, 3495 |
| Lsp1109I | GCAGC | 8 cut(s) | 218, 349, 917, 1104, 2071, 2734, 2906, 3283 |
| MaeII | ACGT | 4 cut(s) | 198, 1184, 1762, 2713 |
| MaeIII | GTNAC | 9 cut(s) | 452, 905, 952, 1180, 1575, 1583, 2368, 2766, 2971 |
| MbiI | CCGCTC | 1 cut(s) | 24 |
| MfeI | CAATTG | 2 cut(s) | 1380, 3175 |
| MflI | RGATCY | 4 cut(s) | 2396, 3362, 3867, 3938 |
| MhlI | GDGCHC | 7 cut(s) | 832, 916, 1026, 1564, 1811, 1864, 3064 |
| MlyI | GAGTC | 7 cut(s) | 312, 875, 1088, 2029, 2614, 2774, 2912 |
| MmeI | TCCRAC | 4 cut(s) | 1429, 2384, 2648, 2861 |
| Mph1103I | ATGCAT | 4 cut(s) | 640, 864, 1726, 2331 |
| MroNI | GCCGGC | 1 cut(s) | 874 |
| MroXI | GAANNNNTTC | 3 cut(s) | 729, 1248, 3508 |
| MslI | CAYNNNNRTG | 5 cut(s) | 249, 1567, 2502, 2785, 4034 |
| MspA1I | CMGCKG | 6 cut(s) | 959, 1117, 1535, 2513, 3274, 3726 |
| MspI | CCGG | 5 cut(s) | 135, 257, 582, 718, 875 |
| MspR9I | CCNGG | 6 cut(s) | 136, 257, 398, 992, 2364, 3004 |
| MunI | CAATTG | 2 cut(s) | 1380, 3175 |
| Mva1269I | GAATGC | 6 cut(s) | 210, 862, 2329, 2571, 3454, 4116 |
| MvaI | CCWGG | 4 cut(s) | 398, 992, 2364, 3004 |
| MvnI | CGCG | 2 cut(s) | 216, 1362 |
| NaeI | GCCGGC | 1 cut(s) | 876 |
| NciI | CCSGG | 2 cut(s) | 136, 257 |
| NcoI | CCATGG | 3 cut(s) | 220, 1300, 2314 |
| NdeI | CATATG | 5 cut(s) | 1040, 2224, 2304, 2336, 3578 |
| NgoMIV | GCCGGC | 1 cut(s) | 874 |
| NlaIV | GGNNCC | 9 cut(s) | 265, 395, 621, 989, 1377, 1571, 3242, 3400, 3869 |
| NmeAIII | GCCGAG | 1 cut(s) | 3348 |
| NmuCI | GTSAC | 5 cut(s) | 452, 905, 952, 1575, 2766 |
| NsbI | TGCGCA | 1 cut(s) | 572 |
| NsiI | ATGCAT | 4 cut(s) | 640, 864, 1726, 2331 |
| NspI | RCATGY | 8 cut(s) | 1154, 1272, 2501, 2754, 3143, 3159, 3382, 3521 |
| NspV | TTCGAA | 1 cut(s) | 276 |
| OliI | CACNNNNGTG | 1 cut(s) | 1567 |
| PagI | TCATGA | 1 cut(s) | 3883 |
| PciI | ACATGT | 2 cut(s) | 1268, 2750 |
| PciSI | GCTCTTC | 1 cut(s) | 14 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 829, 1258 |
| PctI | GAATGC | 6 cut(s) | 210, 862, 2329, 2571, 3454, 4116 |
| PdiI | GCCGGC | 1 cut(s) | 876 |
| PdmI | GAANNNNTTC | 3 cut(s) | 729, 1248, 3508 |
| PfeI | GAWTC | 3 cut(s) | 3542, 3563, 3873 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1133, 2159 |
| PfoI | TCCNGGA | 2 cut(s) | 396, 3002 |
| Ple19I | CGATCG | 1 cut(s) | 823 |
| PleI | GAGTC | 7 cut(s) | 311, 875, 1088, 2028, 2614, 2773, 2912 |
| PpsI | GAGTC | 7 cut(s) | 311, 875, 1088, 2028, 2614, 2773, 2912 |
| Ppu21I | YACGTR | 3 cut(s) | 1185, 1763, 2714 |
| PpuMI | RGGWCCY | 2 cut(s) | 394, 3241 |
| PscI | ACATGT | 2 cut(s) | 1268, 2750 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2138 |
| PshBI | ATTAAT | 2 cut(s) | 327, 4007 |
| PsiI | TTATAA | 1 cut(s) | 2111 |
| Psp124BI | GAGCTC | 1 cut(s) | 1864 |
| Psp5II | RGGWCCY | 2 cut(s) | 394, 3241 |
| Psp6I | CCWGG | 4 cut(s) | 396, 990, 2362, 3002 |
| PspFI | CCCAGC | 3 cut(s) | 1804, 2259, 4100 |
| PspGI | CCWGG | 4 cut(s) | 396, 990, 2362, 3002 |
| PspN4I | GGNNCC | 9 cut(s) | 265, 395, 621, 989, 1377, 1571, 3242, 3400, 3869 |
| PspPI | GGNCC | 7 cut(s) | 254, 394, 783, 988, 1223, 2380, 3241 |
| PspPPI | RGGWCCY | 2 cut(s) | 394, 3241 |
| PstI | CTGCAG | 1 cut(s) | 42 |
| PstNI | CAGNNNCTG | 3 cut(s) | 55, 3981, 4120 |
| PsuI | RGATCY | 4 cut(s) | 2396, 3362, 3867, 3938 |
| PvuI | CGATCG | 1 cut(s) | 823 |
| PvuII | CAGCTG | 6 cut(s) | 959, 1117, 1535, 2513, 3274, 3726 |
| RsaI | GTAC | 9 cut(s) | 586, 850, 973, 1187, 1313, 1501, 2199, 2265, 2712 |
| RsaNI | GTAC | 9 cut(s) | 585, 849, 972, 1186, 1312, 1500, 2198, 2264, 2711 |
| RseI | CAYNNNNRTG | 5 cut(s) | 249, 1567, 2502, 2785, 4034 |
| SacI | GAGCTC | 1 cut(s) | 1864 |
| SapI | GCTCTTC | 1 cut(s) | 14 |
| Sau96I | GGNCC | 7 cut(s) | 254, 394, 783, 988, 1223, 2380, 3241 |
| SchI | GAGTC | 7 cut(s) | 312, 875, 1088, 2029, 2614, 2774, 2912 |
| ScrFI | CCNGG | 6 cut(s) | 136, 257, 398, 992, 2364, 3004 |
| SduI | GDGCHC | 7 cut(s) | 832, 916, 1026, 1564, 1811, 1864, 3064 |
| SfcI | CTRYAG | 6 cut(s) | 38, 2392, 2796, 3076, 3134, 4095 |
| SfuI | TTCGAA | 1 cut(s) | 276 |
| SinI | GGWCC | 5 cut(s) | 394, 783, 1223, 2380, 3241 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 249, 1567, 2502, 2785, 4034 |
| SnaBI | TACGTA | 1 cut(s) | 1185 |
| SsiI | CCGC | 8 cut(s) | 24, 234, 541, 667, 878, 2167, 2653, 2720 |
| SspI | AATATT | 2 cut(s) | 1219, 2816 |
| SstI | GAGCTC | 1 cut(s) | 1864 |
| StyD4I | CCNGG | 6 cut(s) | 134, 255, 396, 990, 2362, 3002 |
| StyI | CCWWGG | 5 cut(s) | 205, 220, 1300, 2136, 2314 |
| TaiI | ACGT | 4 cut(s) | 201, 1187, 1765, 2716 |
| TaqI | TCGA | 9 cut(s) | 195, 276, 316, 1928, 2254, 2847, 2921, 3540, 4011 |
| TatI | WGTACW | 2 cut(s) | 848, 971 |
| TauI | GCSGC | 3 cut(s) | 27, 237, 2170 |
| TfiI | GAWTC | 3 cut(s) | 3542, 3563, 3873 |
| TseFI | GTSAC | 5 cut(s) | 452, 905, 952, 1575, 2766 |
| TseI | GCWGC | 8 cut(s) | 231, 337, 930, 1117, 2084, 2722, 2894, 3271 |
| Tsp45I | GTSAC | 5 cut(s) | 452, 905, 952, 1575, 2766 |
| TspGWI | ACGGA | 4 cut(s) | 799, 2442, 2544, 3951 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1133, 2159 |
| VpaK11BI | GGWCC | 5 cut(s) | 394, 783, 1223, 2380, 3241 |
| VspI | ATTAAT | 2 cut(s) | 327, 4007 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3168 |
| XapI | RAATTY | 8 cut(s) | 1682, 1988, 2119, 2296, 3442, 3767, 3796, 4134 |
| XceI | RCATGY | 8 cut(s) | 1154, 1272, 2501, 2754, 3143, 3159, 3382, 3521 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2153, 2160 |
| XmiI | GTMKAC | 2 cut(s) | 2691, 3160 |
| XmnI | GAANNNNTTC | 3 cut(s) | 729, 1248, 3508 |
| Zsp2I | ATGCAT | 4 cut(s) | 640, 864, 1726, 2331 |