Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Forward (+)

20470406 .. 20472820

Gene Structure 2415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g19630.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGTCATTCCAGTGGCTTTCAACAGATATGCCAGTCAAGTATTCTAGTAATCCAAAATTTCCAGACAATATAGGGAAAAAAATTGGTCTAGCTGGGAATGTTTCTACTGAAGAAGCTGATGCAGGATCTAGATTAGTGTCTTCAAAAAAGGGAAATATGGAGTTCAAATCTTCAGTTAAGGATAAATATGAAGATGACTGGAGATACCTAGCTGTCACTGCGTTTTTGGTCAAATGTGCTGGTTCCAGGATTACCGTTTGTTTTATTGTTGTTGCTTGTTCAGATGCCACCCTTGCATTGCGGGCTCTAGTTTTGCCCTATAGGCTATGGTTTGATGTTTCTGTGTTGGTTCCGCTATCATCACCAGTTTTGGCATTGCAGCATGTCATCCTTCCCACATGCGTCCCTTCTGAAGATAATGTTCAGAGGGGGAGTTTGTATATTCTCATTAGTGGGGCTACCGACGGAAGTATTGCCTTTTGGGACCTCACCAAAAGCATTCAAGCTTTCATGCAACTTGTATCAGTACTTGATGTTGGAAAGTTAATTGATTGTCAGAAAAGGCCACGGACAGGGAGGGGAAGTCAGGGTGGACGACAGTGGAGATCTTTAGGCAGTAGCATGTCAAAGAATAGACTAGGCACTGGTTCCACCACTGTAAAAGCTGGAGAGGAAACTAAACGCAATTTTCCTAATCACATTATGGATGGAATGACATCGATGCAAAATGATCACGAGAGCAGAACAGTTTCTTCCCAAGCTGATGATACTGCTTCCGAAGTGAATGCTTCTGATGCCTCATCTGATATATGTGAAATATCTCCTTTAGTTGTTTTCAAGACCATTCATCAATCGGGTGTCAATTCTCTCCATGTTTCAGATGTAGAGGGTTGTCGAAGTCCTGAAATTGGGTTTCTGTACAATTTAATTAGTGGGGGTGATGATCAAGCGCTTAGTTGTCTTACGTTTGAATTGTCAGTTTCAGCATCAAACACTGGATCTGAGAATATGGCACTGGAAATTACAAATTCAGTCACTGAACTTGGAAGTAAAAGAAAAATTATTCACTCTAGTCAAGACAAGAACTATTGGATCAGATTCCTAAATCATGATAAAGTCCCTTCAGCTCACAGCTCTGCTGTAAAGGGTGTTTGGACAGATGGATCTTGGGTTTTTTCCACTGGTCTTGATCAACGTGTCAGGTGCTGGCGTCTAGAGGATGAAGGTAAACTAATTGAGGGTTCTTATTTCATCATAAGTGTGCCAGAGCCAGAAGCGCTGGATGCTAAAGTGTGTGGCCGGAACCATTATCAGATTGCAGTAGCTGGGAGAGGAATGCAAATGCTTGAGTTCTCTGAATCTTTTGATGTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

459

Amino Acids

50.12

Weight (kDa)

5.9

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	301, 353
AclWI	GGATC	4 cut(s)	133, 1006, 1100, 1171
AcoI	YGGCCR	1 cut(s)	1297
AcsI	RAATTY	2 cut(s)	56, 1027
AcuI	CTGAAG	4 cut(s)	129, 156, 432, 1107
AcyI	GRCGYC	1 cut(s)	1210
AfaI	GTAC	2 cut(s)	528, 920
AfeI	AGCGCT	2 cut(s)	951, 1278
AfiI	CCNNNNNNNGG	2 cut(s)	572, 908
AflIII	ACRYGT	1 cut(s)	1195
AgsI	TTSAA	6 cut(s)	21, 144, 166, 503, 838, 971
AjnI	CCWGG	1 cut(s)	245
AluBI	AGCT	9 cut(s)	92, 116, 212, 506, 665, 761, 1127, 1134, 1325
AluI	AGCT	9 cut(s)	92, 116, 212, 506, 665, 761, 1127, 1134, 1325
AlwI	GGATC	4 cut(s)	133, 1006, 1100, 1171
AlwNI	CAGNNNCTG	3 cut(s)	1037, 1206, 1325
Aor51HI	AGCGCT	2 cut(s)	951, 1278
AoxI	GGCC	2 cut(s)	563, 1297
ApeKI	GCWGC	1 cut(s)	379
ApoI	RAATTY	2 cut(s)	56, 1027
Asp700I	GAANNNNTTC	1 cut(s)	748
AspLEI	GCGC	2 cut(s)	952, 1279
AspS9I	GGNCC	1 cut(s)	484
AsuHPI	GGTGA	3 cut(s)	354, 481, 950
AvaII	GGWCC	1 cut(s)	484
BanII	GRGCYC	1 cut(s)	307
BauI	CACGAG	1 cut(s)	734
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	2 cut(s)	701, 1154
BcgI	CGANNNNNNTGC	2 cut(s)	767, 801
BciT130I	CCWGG	1 cut(s)	247
BclI	TGATCA	3 cut(s)	730, 943, 1189
BfaI	CTAG	8 cut(s)	45, 89, 129, 209, 308, 638, 1071, 1214
BfmI	CTRYAG	1 cut(s)	319
BfoI	RGCGCY	2 cut(s)	953, 1280
BglI	GCCNNNNNGGC	1 cut(s)	322
BglII	AGATCT	1 cut(s)	605
BisI	GCNGC	1 cut(s)	380
BlsI	GCNGC	1 cut(s)	381
BmcAI	AGTACT	1 cut(s)	528
Bme1390I	CCNGG	1 cut(s)	247
Bme18I	GGWCC	1 cut(s)	484
BmgT120I	GGNCC	1 cut(s)	484
BmiI	GGNNCC	5 cut(s)	244, 351, 485, 649, 1304
BmrFI	CCNGG	1 cut(s)	247
BmsI	GCATC	6 cut(s)	109, 274, 711, 784, 995, 1273
BpiI	GAAGAC	1 cut(s)	132
BpmI	CTGGAG	2 cut(s)	220, 687
BpuEI	CTTGAG	1 cut(s)	1367
Bsa29I	ATCGAT	1 cut(s)	719
BsaHI	GRCGYC	1 cut(s)	1210
BsaJI	CCNNGG	1 cut(s)	566
BsaXI	ACNNNNNCTCC	2 cut(s)	568, 598
Bsc4I	CCNNNNNNNGG	2 cut(s)	572, 908
Bse1I	ACTGG	8 cut(s)	10, 32, 203, 365, 649, 1000, 1020, 1186
Bse3DI	GCAATG	2 cut(s)	296, 374
BseBI	CCWGG	1 cut(s)	247
BseCI	ATCGAT	1 cut(s)	719
BseDI	CCNNGG	1 cut(s)	566
BseGI	GGATG	4 cut(s)	387, 712, 1225, 1288
BseLI	CCNNNNNNNGG	2 cut(s)	572, 908
BseMI	GCAATG	2 cut(s)	296, 374
BseMII	CTCAG	1 cut(s)	993
BseNI	ACTGG	8 cut(s)	10, 32, 203, 365, 649, 1000, 1020, 1186
BseXI	GCAGC	1 cut(s)	391
BseYI	CCCAGC	2 cut(s)	92, 1325
BshFI	GGCC	2 cut(s)	565, 1299
BshVI	ATCGAT	1 cut(s)	719
BsiSI	CCGG	1 cut(s)	1300
BslFI	GGGAC	3 cut(s)	389, 497, 1103
BslI	CCNNNNNNNGG	2 cut(s)	572, 908
BsmFI	GGGAC	3 cut(s)	389, 497, 1103
BsmI	GAATGC	3 cut(s)	498, 790, 1341
BsnI	GGCC	2 cut(s)	565, 1299
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp1407I	TGTACA	1 cut(s)	918
Bsp143I	GATC	8 cut(s)	125, 605, 730, 943, 998, 1092, 1163, 1189
BspACI	CCGC	2 cut(s)	301, 353
BspANI	GGCC	2 cut(s)	565, 1299
BspCNI	CTCAG	1 cut(s)	994
BspDI	ATCGAT	1 cut(s)	719
BspHI	TCATGA	1 cut(s)	1108
BspLI	GGNNCC	5 cut(s)	244, 351, 485, 649, 1304
BspPI	GGATC	4 cut(s)	133, 1006, 1100, 1171
BsrDI	GCAATG	2 cut(s)	296, 374
BsrGI	TGTACA	1 cut(s)	918
BsrI	ACTGG	8 cut(s)	10, 32, 203, 365, 649, 1000, 1020, 1186
BssECI	CCNNGG	1 cut(s)	566
BssMI	GATC	8 cut(s)	125, 605, 730, 943, 998, 1092, 1163, 1189
BssNI	GRCGYC	1 cut(s)	1210
BssSI	CACGAG	1 cut(s)	734
Bst2BI	CACGAG	1 cut(s)	734
Bst2UI	CCWGG	1 cut(s)	247
Bst4CI	ACNGT	4 cut(s)	256, 600, 658, 748
BstACI	GRCGYC	1 cut(s)	1210
BstAUI	TGTACA	1 cut(s)	918
BstC8I	GCNNGC	2 cut(s)	303, 1208
BstDEI	CTNAG	2 cut(s)	953, 1002
BstDSI	CCRYGG	1 cut(s)	566
BstF5I	GGATG	4 cut(s)	387, 712, 1225, 1288
BstH2I	RGCGCY	2 cut(s)	953, 1280
BstHHI	GCGC	2 cut(s)	952, 1279
BstKTI	GATC	8 cut(s)	128, 608, 733, 946, 1001, 1095, 1166, 1192
BstMBI	GATC	8 cut(s)	125, 605, 730, 943, 998, 1092, 1163, 1189
BstMWI	GCNNNNNNNGC	7 cut(s)	218, 293, 302, 322, 794, 1276, 1283
BstNI	CCWGG	1 cut(s)	247
BstNSI	RCATGY	3 cut(s)	386, 402, 625
BstSCI	CCNGG	1 cut(s)	245
BstSFI	CTRYAG	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	391
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	4 cut(s)	125, 605, 998, 1163
BstYI	RGATCY	4 cut(s)	125, 605, 998, 1163
Bsu15I	ATCGAT	1 cut(s)	719
BsuRI	GGCC	2 cut(s)	565, 1299
BsuTUI	ATCGAT	1 cut(s)	719
BtgI	CCRYGG	1 cut(s)	566
BtsCI	GGATG	4 cut(s)	387, 712, 1225, 1288
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	9 cut(s)	17, 216, 605, 642, 654, 993, 1013, 1035, 1179
Cac8I	GCNNGC	2 cut(s)	303, 1208
CaiI	CAGNNNCTG	3 cut(s)	1037, 1206, 1325
CciI	TCATGA	1 cut(s)	1108
CfoI	GCGC	2 cut(s)	952, 1279
Cfr13I	GGNCC	1 cut(s)	484
ClaI	ATCGAT	1 cut(s)	719
CseI	GACGC	2 cut(s)	391, 1199
Csp6I	GTAC	2 cut(s)	527, 919
CspCI	CAANNNNNGTGG	2 cut(s)	1168, 1203
CviAII	CATG	6 cut(s)	383, 399, 511, 622, 872, 1109
CviQI	GTAC	2 cut(s)	527, 919
DdeI	CTNAG	2 cut(s)	953, 1002
DpnI	GATC	8 cut(s)	127, 607, 732, 945, 1000, 1094, 1165, 1191
DpnII	GATC	8 cut(s)	125, 605, 730, 943, 998, 1092, 1163, 1189
EaeI	YGGCCR	1 cut(s)	1297
Eco24I	GRGCYC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	484
Eco47III	AGCGCT	2 cut(s)	951, 1278
Eco57I	CTGAAG	4 cut(s)	129, 156, 432, 1107
EcoO109I	RGGNCCY	1 cut(s)	484
EcoRII	CCWGG	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	307
FaeI	CATG	6 cut(s)	386, 402, 514, 625, 875, 1112
FaqI	GGGAC	3 cut(s)	389, 497, 1103
FatI	CATG	6 cut(s)	382, 398, 510, 621, 871, 1108
FauI	CCCGC	1 cut(s)	294
FbaI	TGATCA	3 cut(s)	730, 943, 1189
Fnu4HI	GCNGC	1 cut(s)	380
FokI	GGATG	4 cut(s)	374, 719, 1232, 1295
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	1 cut(s)	380
FspBI	CTAG	8 cut(s)	45, 89, 129, 209, 308, 638, 1071, 1214
GlaI	GCGC	2 cut(s)	951, 1278
GluI	GCNGC	1 cut(s)	380
GsaI	CCCAGC	2 cut(s)	96, 1329
GsuI	CTGGAG	2 cut(s)	220, 687
HaeII	RGCGCY	2 cut(s)	953, 1280
HaeIII	GGCC	2 cut(s)	565, 1299
HapII	CCGG	1 cut(s)	1300
HgaI	GACGC	2 cut(s)	391, 1199
HhaI	GCGC	2 cut(s)	952, 1279
Hin1I	GRCGYC	1 cut(s)	1210
Hin1II	CATG	6 cut(s)	386, 402, 514, 625, 875, 1112
Hin6I	GCGC	2 cut(s)	950, 1277
HinP1I	GCGC	2 cut(s)	950, 1277
HindIII	AAGCTT	1 cut(s)	504
HinfI	GANTC	2 cut(s)	1098, 1358
HpaII	CCGG	1 cut(s)	1300
HphI	GGTGA	3 cut(s)	354, 481, 950
Hpy166II	GTNNAC	2 cut(s)	593, 1229
Hpy188III	TCNNGA	9 cut(s)	62, 129, 734, 838, 902, 1076, 1109, 1187, 1214
Hpy8I	GTNNAC	2 cut(s)	593, 1229
Hpy99I	CGWCG	1 cut(s)	467
HpyAV	CCTTC	4 cut(s)	401, 417, 1131, 1217
HpyCH4III	ACNGT	4 cut(s)	256, 600, 658, 748
HpyCH4IV	ACGT	2 cut(s)	965, 1195
HpyCH4V	TGCA	7 cut(s)	122, 296, 379, 514, 724, 1319, 1339
HpyF10VI	GCNNNNNNNGC	7 cut(s)	218, 293, 302, 322, 794, 1276, 1283
HpyF3I	CTNAG	2 cut(s)	953, 1002
HpySE526I	ACGT	2 cut(s)	965, 1195
Hsp92I	GRCGYC	1 cut(s)	1210
Hsp92II	CATG	6 cut(s)	386, 402, 514, 625, 875, 1112
HspAI	GCGC	2 cut(s)	950, 1277
Ksp22I	TGATCA	3 cut(s)	730, 943, 1189
Kzo9I	GATC	8 cut(s)	125, 605, 730, 943, 998, 1092, 1163, 1189
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	6 cut(s)	109, 274, 711, 784, 995, 1273
MaeI	CTAG	8 cut(s)	45, 89, 129, 209, 308, 638, 1071, 1214
MaeII	ACGT	2 cut(s)	965, 1195
MaeIII	GTNAC	2 cut(s)	214, 1033
MalI	GATC	8 cut(s)	127, 607, 732, 945, 1000, 1094, 1165, 1191
MboI	GATC	8 cut(s)	125, 605, 730, 943, 998, 1092, 1163, 1189
MboII	GAAGA	6 cut(s)	122, 132, 162, 203, 425, 744
MflI	RGATCY	4 cut(s)	125, 605, 998, 1163
MhlI	GDGCHC	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	517
MnlI	CCTC	9 cut(s)	420, 497, 570, 664, 808, 880, 1210, 1231, 1325
MroXI	GAANNNNTTC	1 cut(s)	748
MseI	TTAA	3 cut(s)	177, 545, 926
MslI	CAYNNNNRTG	2 cut(s)	10, 1259
MspI	CCGG	1 cut(s)	1300
MspR9I	CCNGG	1 cut(s)	247
Mva1269I	GAATGC	3 cut(s)	498, 790, 1341
MvaI	CCWGG	1 cut(s)	247
MwoI	GCNNNNNNNGC	7 cut(s)	218, 293, 302, 322, 794, 1276, 1283
NdeII	GATC	8 cut(s)	125, 605, 730, 943, 998, 1092, 1163, 1189
NlaIII	CATG	6 cut(s)	386, 402, 514, 625, 875, 1112
NlaIV	GGNNCC	5 cut(s)	244, 351, 485, 649, 1304
NmuCI	GTSAC	2 cut(s)	214, 1033
NspI	RCATGY	3 cut(s)	386, 402, 625
PagI	TCATGA	1 cut(s)	1108
PctI	GAATGC	3 cut(s)	498, 790, 1341
PdmI	GAANNNNTTC	1 cut(s)	748
PfeI	GAWTC	2 cut(s)	1098, 1358
PfoI	TCCNGGA	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	381
PpuMI	RGGWCCY	1 cut(s)	484
Psp5II	RGGWCCY	1 cut(s)	484
Psp6I	CCWGG	1 cut(s)	245
PspFI	CCCAGC	2 cut(s)	92, 1325
PspGI	CCWGG	1 cut(s)	245
PspN4I	GGNNCC	5 cut(s)	244, 351, 485, 649, 1304
PspPI	GGNCC	1 cut(s)	484
PspPPI	RGGWCCY	1 cut(s)	484
PstNI	CAGNNNCTG	3 cut(s)	1037, 1206, 1325
PsuI	RGATCY	4 cut(s)	125, 605, 998, 1163
RsaI	GTAC	2 cut(s)	528, 920
RsaNI	GTAC	2 cut(s)	527, 919
RseI	CAYNNNNRTG	2 cut(s)	10, 1259
SaqAI	TTAA	3 cut(s)	177, 545, 926
SatI	GCNGC	1 cut(s)	380
Sau3AI	GATC	8 cut(s)	125, 605, 730, 943, 998, 1092, 1163, 1189
Sau96I	GGNCC	1 cut(s)	484
ScaI	AGTACT	1 cut(s)	528
ScrFI	CCNGG	1 cut(s)	247
SduI	GDGCHC	1 cut(s)	307
SfaNI	GCATC	6 cut(s)	109, 274, 711, 784, 995, 1273
SfcI	CTRYAG	1 cut(s)	319
SinI	GGWCC	1 cut(s)	484
SmiMI	CAYNNNNRTG	2 cut(s)	10, 1259
SmlI	CTYRAG	1 cut(s)	1346
SmoI	CTYRAG	1 cut(s)	1346
SsiI	CCGC	2 cut(s)	301, 353
SspMI	CTAG	8 cut(s)	45, 89, 129, 209, 308, 638, 1071, 1214
StyD4I	CCNGG	1 cut(s)	245
TaaI	ACNGT	4 cut(s)	256, 600, 658, 748
TaiI	ACGT	2 cut(s)	968, 1198
TaqI	TCGA	2 cut(s)	719, 895
TatI	WGTACW	2 cut(s)	526, 918
TfiI	GAWTC	2 cut(s)	1098, 1358
Tru1I	TTAA	3 cut(s)	177, 545, 926
Tru9I	TTAA	3 cut(s)	177, 545, 926
TscAI	CASTG	9 cut(s)	17, 223, 605, 649, 661, 1000, 1020, 1042, 1186
TseFI	GTSAC	2 cut(s)	214, 1033
TseI	GCWGC	1 cut(s)	379
Tsp45I	GTSAC	2 cut(s)	214, 1033
TspDTI	ATGAA	5 cut(s)	204, 499, 836, 1236, 1240
TspGWI	ACGGA	2 cut(s)	480, 583
TspRI	CASTG	9 cut(s)	17, 223, 605, 649, 661, 1000, 1020, 1042, 1186
VpaK11BI	GGWCC	1 cut(s)	484
XapI	RAATTY	2 cut(s)	56, 1027
XbaI	TCTAGA	2 cut(s)	128, 1213
XceI	RCATGY	3 cut(s)	386, 402, 625
XmnI	GAANNNNTTC	1 cut(s)	748
XspI	CTAG	8 cut(s)	45, 89, 129, 209, 308, 638, 1071, 1214
ZrmI	AGTACT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.