Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Forward (+)

16976362 .. 16988680

Gene Structure 12319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00395820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4170 bp

ATGGCTATGGAGAAGAAGAAGAGCGGCTCATGGGTTCTGCAAAGTGGTCAATATCTTGGAGAAGTGTCAGCCCTGTGTTTCCTTCACCTACCTTCTCACCTGTCGATAAGGGAGCTTCCTTATTTAGTTGCCGGGTCGGGTTCGCAAATCTTGGTCTATGATTTGGAACTGGGAACCATGATGAGGTCGTTCGACGTTTTCCAAGGCATTCGCGTCCATGGGATTTGCTGCGGCGCTACTCATACTGATGGCCCCGAGGGAACCGTTGCTTTCGAAATCGCTGTGTTTGGGGAAAGGAGAGTCAAGGTGTTTGGATTGGAGATTAATTTGGGGCAGCAAGTCAGTGTTGGTCTGAGGCTGTTGCACTTGTTGCCCAACTTTGGGAATTGGGTCTTGGATGTTTCCTTCATCAAGCATGGGGAAGGTCAGTGTATTGCTATTGGGTGTAGTGACAACTCTGTTCATCTTTGGGATGTATCTACTTCTACTGTGGTTCTTCTAGTTCAGCATCCTGAGAGGACTCTTCTGTATTCAATGCGGTTATGGGGTGAAACCATTGAAGCTCTGCGCATTGCATCCGGTACTATCTATAATGAGATCATTGTTTGGAAAGTGGCTCCTCAGTCTGATGATGCATCATGTTTGACAAGCCAAGTAGAACACCACATTGATCAAAGCAATTCACTCCCAAACGGTGCTCAGCTTCCTAATTGCCAGTATGAAGCTATTCATATTAGCAAACTTGCTGGACATGAAGGTTCAATTTTTCGCATATCGTGGTCCTCTAATGGATCAAAGCTGGTTTCTGTATCTGACGATCGTAGTGCTCGTGTCTGGGCAGTTTGTACTCAAGCAATGCATTCTGAGAAGCCAGCAGACTCCATTGGGCTTATGTTATTTGGTCACAGTGCCCGAGTTTGGGACTGCTGCATTTTTGGATCGTTAATTGTCACAGCTGGTGAGGATTGTACTTGTCGTGTGTGGGGCCTGGATGGTAAACACCTAGAGACAATCAAGGAGCACACAGGAAGGGGTATATGGCGATGTTTGTATGATCCGAAATCTTCGCTTCTAATTACTGCTGGCTTTGACTCTGCAATTAAAGTGCATCAGCTGCACATTCCATTCTCTGGGGGATTAAAGGGACATGCAGAGACAAAACAAATCGATGGAATAGTTGCATACAGAACTCTTAATGATACATTTTGGACTTATTGGCCGCTTTGTTATCTCTCCAGCAAAAGTGAATATGTTCGTTGCTTGCGTTTTACATGTGAGGACACCCTTTATGTTGCCACAAACCATGGTTATATGTACCATGCTAAGCTATTGGATACTGAAGTAGAATGGACAAAACTTGTTCGCGTCAGTGAGGAGGTGCCAATTGTTTGCATGGATTTATTGTCAGAACCATTCAAACTTTCTTCTGGTGTTAAGGATTGGATTGCTGTTGGAGATGGTAAAGGAAACATGACAGTTGTTGGGGTTATATATGGTGCTTGTACCCCTAGAGTTGGTTTTGCCTTTACTTGGTCAGCTGGAATAGAAAGACAACTCCTTGGAGCACATTGGTGCCAGTCACTAGGTTACGGGTTCGTCTTCACTGCTGATCCTAGAGGAACATTGAAGCTGTGGAGGCTGTGTGATCACTCTGCAACGAGCTGTGATGTGTCTCTTTTAGCTGAATTCACATCAAGTTTCAGAAGTAGAATAATGTGTTTAGATGCATCTTTGGAGGAAGAGGTATTGGTATGTGGAGATATACGTGGAAATCTTGTTTTGTTTCCTTTGTTGAAGAGTGTGTTGCTGGGCACATTGGTCGCTTCTGATGTTAAAATATCTCCAGCAAGTTGTTTCAAAGGAGCTCATGGGATATCAAGCATCTCTAGTGTTGCTGTTGCTAGACTAAGTTCTAATCAGATTGAAATATGCTCGACTGGAGCAGATGGGTGTATATGCTATCTGGAATATGACAAAGATAGGAATGATTTGGAATTTATAGGGATGAAACAAGTGAAGGAGTTGAGTCTTATTCAATCTGTCTCTGCGTGCAATAGATCTGTGAACGAGCCATCAAACTGTCATTATGCTGCTGGTTTTGCATCAGTGGATTTTATAATTTGGAATTTATTAACTGAGACCAAGGTCTTCCAAATCCCATGTGGTGGATGGCGGCGTCCTCATTCCTATTATCTTGGTGATGTACCAGAGATAAAGAACTGCTTTGCATATGTTAAGGATGATATCATTTATATTCATCGACGCTGGGTACTGAATGGTGAAAGGAAGGAACTCTCTAGGAATTTGCATATGCAATTCCATGGGAGAGAGATGCATTCCATATGCTTTGTCTCAGAAGAATTGCAACCTGGAGTAACTAGGAAGGACCATCTGCTCTATAGATCTAGTTGGATTGCAACTGGCTGTGAAGACGGAACTGTGAGGTTGACTAGGTATATGCCAGATGTTGATAATTGGTCTGGATCAAAATTGCTTGGGGAGCATGTTGGTGGATCAGCTGTGAGATCAATATGCTGTGTGTCAAAGATAAACATACTTCCGTCAGATATGACTGGCATTCCCAATATAAGAATTGCTAACAATGGAACAACAGAGAATAGAGAGACTCCGACTTTATTGATTTCTGTTGGTGCAAAGCGGGTCTTGACTTCTTGGCTACTAAGAAGTAGGAAAGTAGACAAGAAGGAAGAAATAGTACGTGATCCGCAGCATGACAACACTGGAAATGGCAATACATGTTTGTCCCCAGAGTTGCCTTCAATGTCATTCCAGTGGCTTTCTACAGATATGCCAGCAAAATATTCTAGTATTCAAAAAGTTCCAACAAACATCGAGAAAAGAGCTGATCAAGCTGGCGATGCTGATGGTAAAGATGATGCAGCATCAGAAAAGGGAAACAAAGATTCGAACTCCTGCATTAAAGATAAATATGAAGATGACTGGAGATACATGGCTGTTACTGCTTTTCTTGTAAAGTGTGCCAATTCCAGGATAACTGTCTGTTTTATTGGTGTCGCTTGTTCTGATGCCACCCTTGCATTACGGGCTCTAGTTTTGCCCTATAGGCTATGGTTTGATGTTGCTTTTCTGTGTCCTCTATCATCACCAGTTCTGTCCCTACAGCATGTCATCCTTCCTGCATGTCTACCTTCTGAAGGCAATTGGCAGATTGGAAGTTTGTATATTCTCATCAGTGGGGCTACTGATGGAAGCATTGCCTTTTGGGACCTCACTAGAAGCATTGAAGCTTTTATGCAGCTGGTGTCAATACTTAATACAGAAAAGTTCATTGACTGTCAGAAACGGCCGAGAACAGGGAGGGGAAGTCAGGGTGGACGATGGTGGAGATCTTTAGGCAGTAGCATGTCAACGAGTAGGCTAGGTGCCAGTTCCACCACTATTAAAGCTGGAGTGGAAACTGATGAGAATTTGCCAAAGCATTCTGGGGATGGAACTACATCAATGCTAAATGATAATGGAAGCAGTAGAACGGCTTCTTCACATGCTATTCATACTGCTTCCCTAGATTCAGAAGCAAGTGCTTATGATTCCTCATCGGACATATGTGAAATATCACCATTACTTGTCTTCAAGGCCGTTCACAAATCTGGTGTCAATTCTCTCCACATTTCAGATGTAGAGGGTTGTCTAAGTCCTGAAATCGGTTTTCTCTATAATTTAATTAGTGGGGGTGATGATCAAGCCCTTAGCTGTCTTACATTTGAATTGTCAGTGTCAACATTTAGCTCTGAATTTGATAATATGACACTGGAAATCAAAAATTCAATCACTGAACTTGGAAATGCAAAGAAGTTAGTTCATTCTAACCAAGACAAGAAGAAGAACTATTGGATCCGATTCTTAAATCATGATAAAGTCCCCTCAGCTCACAGCTCTGCCGTAAAAGGTGTTTGGACAGACGGATCTTGGGTTTTTTCAACTGGTCTGGATCAGCGTGTCAGGTGCTGGCGTCTTCAGGAGGAAGGTAAATTAATTGAGTATGCTTATTTGGTCATCAGTGTGCCAGAGCCAGAAGCACTGGACGCTAAACTGTGTGGCAGGAACAAATATCAGATTGCAGTAGCTGGGAGGGGAATGCAGATGCTGGAGTTCTCTGAAATTCTGGCATCAGTTGATATAACCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

1389

Amino Acids

153.4

Weight (kDa)

6.11

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	136 - 363	3.7e-06	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	244 - 371	6.6e-13	WDR5 beta-propeller domain
WD40	PF00400	245 - 279	9.8e-06	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	246 - 371	6.9e-13	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	251 - 369	2e-10	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2117
Acc16I	TGCGCA	1 cut(s)	569
AccB1I	GGYRCC	3 cut(s)	1378, 1572, 3404
AccB7I	CCANNNNNTGG	2 cut(s)	1130, 2165
AccBSI	CCGCTC	1 cut(s)	24
AccI	GTMKAC	2 cut(s)	2697, 3166
AccII	CGCG	2 cut(s)	213, 1365
AciI	CCGC	7 cut(s)	24, 231, 538, 1220, 2173, 2659, 2726
AcoI	YGGCCR	2 cut(s)	1217, 3326
AcsI	RAATTY	8 cut(s)	1685, 1994, 2125, 2302, 3448, 3773, 3802, 4140
AcuI	CTGAAG	3 cut(s)	1359, 3195, 3980
AcyI	GRCGYC	2 cut(s)	2176, 3991
AfaI	GTAC	8 cut(s)	583, 847, 970, 1316, 1504, 2205, 2271, 2718
AflIII	ACRYGT	2 cut(s)	1271, 2756
AjnI	CCWGG	3 cut(s)	987, 2368, 3008
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AleI	CACNNNNGTG	1 cut(s)	1570
Alw21I	GWGCWC	5 cut(s)	700, 829, 1023, 1567, 1867
Alw26I	GTCTC	7 cut(s)	1001, 1148, 1677, 2047, 2132, 2356, 2618
AlwNI	CAGNNNCTG	3 cut(s)	3987, 4106, 4126
Ama87I	CYCGRG	2 cut(s)	254, 912
AoxI	GGCC	5 cut(s)	250, 985, 1217, 3326, 3615
ApeKI	GCWGC	8 cut(s)	228, 334, 927, 1114, 2090, 2728, 2900, 3277
ApoI	RAATTY	8 cut(s)	1685, 1994, 2125, 2302, 3448, 3773, 3802, 4140
ArsI	GACNNNNNNTTYG	2 cut(s)	3618, 3650
AseI	ATTAAT	2 cut(s)	324, 4013
Asp700I	GAANNNNTTC	3 cut(s)	726, 1251, 3514
AspLEI	GCGC	2 cut(s)	236, 570
AspS9I	GGNCC	5 cut(s)	251, 780, 985, 2386, 3247
AsuC2I	CCSGG	1 cut(s)	133
AsuHPI	GGTGA	9 cut(s)	77, 89, 560, 971, 2210, 2291, 3117, 3588, 3725
AsuII	TTCGAA	2 cut(s)	273, 2927
AvaI	CYCGRG	2 cut(s)	254, 912
AvaII	GGWCC	3 cut(s)	780, 2386, 3247
BaeGI	GKGCMC	2 cut(s)	913, 1814
BaeI	ACNNNNGTAYC	2 cut(s)	1326, 1359
BamHI	GGATCC	1 cut(s)	3873
BanI	GGYRCC	3 cut(s)	1378, 1572, 3404
BanII	GRGCYC	2 cut(s)	1867, 3070
BarI	GAAGNNNNNNTAC	4 cut(s)	2700, 2732, 3499, 3531
BauI	CACGAG	1 cut(s)	828
BbsI	GAAGAC	5 cut(s)	1591, 2140, 2436, 3601, 3986
Bbv12I	GWGCWC	5 cut(s)	700, 829, 1023, 1567, 1867
BbvCI	CCTCAGC	1 cut(s)	3904
BbvI	GCAGC	8 cut(s)	215, 346, 914, 1101, 2077, 2740, 2912, 3289
BceAI	ACGGC	4 cut(s)	3341, 3528, 3602, 3905
BcgI	CGANNNNNNTGC	4 cut(s)	806, 840, 1801, 1835
BciT130I	CCWGG	3 cut(s)	989, 2370, 3010
BciVI	GTATCC	1 cut(s)	1327
BclI	TGATCA	4 cut(s)	670, 1645, 2866, 3718
BcnI	CCSGG	1 cut(s)	133
BcoDI	GTCTC	7 cut(s)	1001, 1148, 1677, 2047, 2132, 2356, 2618
BfmI	CTRYAG	4 cut(s)	2398, 2802, 3082, 3140
BfoI	RGCGCY	1 cut(s)	237
BfuI	GTATCC	1 cut(s)	1327
BglI	GCCNNNNNGGC	1 cut(s)	3085
BglII	AGATCT	3 cut(s)	2057, 2402, 3368
BlpI	GCTNAGC	2 cut(s)	699, 1323
Bme1390I	CCNGG	4 cut(s)	133, 989, 2370, 3010
Bme18I	GGWCC	3 cut(s)	780, 2386, 3247
BmeT110I	CYCGRG	2 cut(s)	254, 912
BmgT120I	GGNCC	5 cut(s)	251, 780, 985, 2386, 3247
BmrFI	CCNGG	4 cut(s)	133, 989, 2370, 3010
BmrI	ACTGGG	2 cut(s)	179, 4159
BmuI	ACTGGG	2 cut(s)	179, 4159
BoxI	GACNNNNGTC	1 cut(s)	2144
BpiI	GAAGAC	5 cut(s)	1591, 2140, 2436, 3601, 3986
BpmI	CTGGAG	7 cut(s)	1219, 1827, 1959, 2391, 2983, 3450, 4148
Bpu10I	CCTNAGC	2 cut(s)	3728, 3904
Bpu1102I	GCTNAGC	2 cut(s)	699, 1323
Bpu14I	TTCGAA	2 cut(s)	273, 2927
BpuEI	CTTGAG	1 cut(s)	834
BpuMI	CCSGG	1 cut(s)	133
Bsa29I	ATCGAT	1 cut(s)	1167
BsaAI	YACGTR	2 cut(s)	1766, 2720
BsaHI	GRCGYC	2 cut(s)	2176, 3991
BsaI	GGTCTC	1 cut(s)	2132
BsaJI	CCNNGG	7 cut(s)	202, 217, 255, 1303, 1558, 2142, 2320
BsaWI	WCCGGW	1 cut(s)	578
BsaXI	ACNNNNNCTCC	4 cut(s)	1627, 1657, 3331, 3361
Bse3DI	GCAATG	3 cut(s)	570, 861, 3234
BseBI	CCWGG	3 cut(s)	989, 2370, 3010
BseCI	ATCGAT	1 cut(s)	1167
BseDI	CCNNGG	7 cut(s)	202, 217, 255, 1303, 1558, 2142, 2320
BseMI	GCAATG	3 cut(s)	570, 861, 3234
BseMII	CTCAG	8 cut(s)	344, 504, 635, 713, 855, 2127, 2367, 3918
BseRI	GAGGAG	2 cut(s)	609, 1388
BseSI	GKGCMC	2 cut(s)	913, 1814
BseX3I	CGGCCG	1 cut(s)	3326
BseXI	GCAGC	8 cut(s)	215, 346, 914, 1101, 2077, 2740, 2912, 3289
BseYI	CCCAGC	3 cut(s)	1807, 2265, 4106
BsgI	GTGCAG	1 cut(s)	1100
Bsh1236I	CGCG	2 cut(s)	213, 1365
Bsh1285I	CGRYCG	2 cut(s)	820, 3329
BshFI	GGCC	5 cut(s)	252, 987, 1219, 3328, 3617
BshNI	GGYRCC	3 cut(s)	1378, 1572, 3404
BshVI	ATCGAT	1 cut(s)	1167
BsiEI	CGRYCG	2 cut(s)	820, 3329
BsiHKAI	GWGCWC	5 cut(s)	700, 829, 1023, 1567, 1867
BsiHKCI	CYCGRG	2 cut(s)	254, 912
BsiSI	CCGG	2 cut(s)	132, 579
BslFI	GGGAC	6 cut(s)	935, 1158, 2749, 3121, 3260, 3884
BsmAI	GTCTC	7 cut(s)	1001, 1148, 1677, 2047, 2132, 2356, 2618
BsmFI	GGGAC	6 cut(s)	935, 1158, 2749, 3121, 3260, 3884
BsmI	GAATGC	6 cut(s)	207, 859, 2335, 2577, 3460, 4122
BsnI	GGCC	5 cut(s)	252, 987, 1219, 3328, 3617
Bso31I	GGTCTC	1 cut(s)	2132
BsoBI	CYCGRG	2 cut(s)	254, 912
Bsp119I	TTCGAA	2 cut(s)	273, 2927
Bsp1286I	GDGCHC	8 cut(s)	700, 829, 913, 1023, 1567, 1814, 1867, 3070
Bsp1720I	GCTNAGC	2 cut(s)	699, 1323
Bsp19I	CCATGG	3 cut(s)	217, 1303, 2320
BspACI	CCGC	7 cut(s)	24, 231, 538, 1220, 2173, 2659, 2726
BspANI	GGCC	5 cut(s)	252, 987, 1219, 3328, 3617
BspCNI	CTCAG	8 cut(s)	345, 505, 634, 712, 856, 2128, 2366, 3917
BspDI	ATCGAT	1 cut(s)	1167
BspFNI	CGCG	2 cut(s)	213, 1365
BspHI	TCATGA	1 cut(s)	3889
BspQI	GCTCTTC	1 cut(s)	14
BspT104I	TTCGAA	2 cut(s)	273, 2927
BspT107I	GGYRCC	3 cut(s)	1378, 1572, 3404
BspTNI	GGTCTC	1 cut(s)	2132
BsrBI	CCGCTC	1 cut(s)	24
BsrDI	GCAATG	3 cut(s)	570, 861, 3234
BssECI	CCNNGG	7 cut(s)	202, 217, 255, 1303, 1558, 2142, 2320
BssNI	GRCGYC	2 cut(s)	2176, 3991
BssSI	CACGAG	1 cut(s)	828
BssT1I	CCWWGG	6 cut(s)	202, 217, 1303, 1558, 2142, 2320
Bst2BI	CACGAG	1 cut(s)	828
Bst2UI	CCWGG	3 cut(s)	989, 2370, 3010
Bst6I	CTCTTC	4 cut(s)	14, 528, 1734, 1790
BstACI	GRCGYC	2 cut(s)	2176, 3991
BstAPI	GCANNNNNTGC	2 cut(s)	370, 1114
BstBAI	YACGTR	2 cut(s)	1766, 2720
BstBI	TTCGAA	2 cut(s)	273, 2927
BstC8I	GCNNGC	7 cut(s)	873, 1084, 1262, 2050, 2814, 2875, 3989
BstDSI	CCRYGG	3 cut(s)	217, 1303, 2320
BstENI	CCTNNNNNAGG	1 cut(s)	3174
BstFNI	CGCG	2 cut(s)	213, 1365
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	2 cut(s)	236, 570
BstMAI	GTCTC	7 cut(s)	1001, 1148, 1677, 2047, 2132, 2356, 2618
BstMCI	CGRYCG	2 cut(s)	820, 3329
BstNI	CCWGG	3 cut(s)	989, 2370, 3010
BstNSI	RCATGY	8 cut(s)	1151, 1275, 2507, 2760, 3149, 3165, 3388, 3527
BstPAI	GACNNNNGTC	1 cut(s)	2144
BstSCI	CCNGG	4 cut(s)	131, 987, 2368, 3008
BstSFI	CTRYAG	4 cut(s)	2398, 2802, 3082, 3140
BstSLI	GKGCMC	2 cut(s)	913, 1814
BstUI	CGCG	2 cut(s)	213, 1365
BstV1I	GCAGC	8 cut(s)	215, 346, 914, 1101, 2077, 2740, 2912, 3289
BstV2I	GAAGAC	5 cut(s)	1591, 2140, 2436, 3601, 3986
BstX2I	RGATCY	5 cut(s)	2057, 2402, 3368, 3873, 3944
BstYI	RGATCY	5 cut(s)	2057, 2402, 3368, 3873, 3944
BstZI	CGGCCG	1 cut(s)	3326
Bsu15I	ATCGAT	1 cut(s)	1167
BsuI	GTATCC	1 cut(s)	1327
BsuRI	GGCC	5 cut(s)	252, 987, 1219, 3328, 3617
BsuTUI	ATCGAT	1 cut(s)	1167
BtgI	CCRYGG	3 cut(s)	217, 1303, 2320
BtgZI	GCGATG	2 cut(s)	1057, 2892
BtsI	GCAGTG	1 cut(s)	1602
Cac8I	GCNNGC	7 cut(s)	873, 1084, 1262, 2050, 2814, 2875, 3989
CaiI	CAGNNNCTG	3 cut(s)	3987, 4106, 4126
CciI	TCATGA	1 cut(s)	3889
CfoI	GCGC	2 cut(s)	236, 570
Cfr13I	GGNCC	5 cut(s)	251, 780, 985, 2386, 3247
ClaI	ATCGAT	1 cut(s)	1167
CseI	GACGC	6 cut(s)	202, 1354, 2165, 2271, 3980, 4073
Csp6I	GTAC	8 cut(s)	582, 846, 969, 1315, 1503, 2204, 2270, 2717
CviQI	GTAC	8 cut(s)	582, 846, 969, 1315, 1503, 2204, 2270, 2717
EaeI	YGGCCR	2 cut(s)	1217, 3326
EagI	CGGCCG	1 cut(s)	3326
Eam1104I	CTCTTC	4 cut(s)	14, 528, 1734, 1790
EarI	CTCTTC	4 cut(s)	14, 528, 1734, 1790
Ecl136II	GAGCTC	1 cut(s)	1865
EclXI	CGGCCG	1 cut(s)	3326
Eco130I	CCWWGG	6 cut(s)	202, 217, 1303, 1558, 2142, 2320
Eco24I	GRGCYC	2 cut(s)	1867, 3070
Eco31I	GGTCTC	1 cut(s)	2132
Eco32I	GATATC	2 cut(s)	1875, 2245
Eco47I	GGWCC	3 cut(s)	780, 2386, 3247
Eco52I	CGGCCG	1 cut(s)	3326
Eco53kI	GAGCTC	1 cut(s)	1865
Eco57I	CTGAAG	3 cut(s)	1359, 3195, 3980
Eco88I	CYCGRG	2 cut(s)	254, 912
EcoICRI	GAGCTC	1 cut(s)	1865
EcoNI	CCTNNNNNAGG	1 cut(s)	3174
EcoO109I	RGGNCCY	2 cut(s)	985, 3247
EcoRI	GAATTC	1 cut(s)	1685
EcoRII	CCWGG	3 cut(s)	987, 2368, 3008
EcoRV	GATATC	2 cut(s)	1875, 2245
EcoT14I	CCWWGG	6 cut(s)	202, 217, 1303, 1558, 2142, 2320
EcoT22I	ATGCAT	4 cut(s)	637, 861, 1729, 2337
EcoT38I	GRGCYC	2 cut(s)	1867, 3070
ErhI	CCWWGG	6 cut(s)	202, 217, 1303, 1558, 2142, 2320
FalI	AAGNNNNNCTT	4 cut(s)	2207, 2239, 2648, 2680
FaqI	GGGAC	6 cut(s)	935, 1158, 2749, 3121, 3260, 3884
FauI	CCCGC	1 cut(s)	2652
FauNDI	CATATG	4 cut(s)	2230, 2310, 2342, 3584
FbaI	TGATCA	4 cut(s)	670, 1645, 2866, 3718
FblI	GTMKAC	2 cut(s)	2697, 3166
FriOI	GRGCYC	2 cut(s)	1867, 3070
FspI	TGCGCA	1 cut(s)	569
GlaI	GCGC	2 cut(s)	235, 569
GsaI	CCCAGC	3 cut(s)	1811, 2269, 4110
GsuI	CTGGAG	7 cut(s)	1219, 1827, 1959, 2391, 2983, 3450, 4148
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	5 cut(s)	252, 987, 1219, 3328, 3617
HapII	CCGG	2 cut(s)	132, 579
HgaI	GACGC	6 cut(s)	202, 1354, 2165, 2271, 3980, 4073
HhaI	GCGC	2 cut(s)	236, 570
Hin1I	GRCGYC	2 cut(s)	2176, 3991
Hin6I	GCGC	2 cut(s)	234, 568
HinP1I	GCGC	2 cut(s)	234, 568
HincII	GTYRAC	3 cut(s)	2448, 3390, 3759
HindII	GTYRAC	3 cut(s)	2448, 3390, 3759
HindIII	AAGCTT	1 cut(s)	3267
HpaII	CCGG	2 cut(s)	132, 579
HphI	GGTGA	9 cut(s)	77, 89, 560, 971, 2210, 2291, 3117, 3588, 3725
Hpy166II	GTNNAC	9 cut(s)	998, 2065, 2448, 2698, 3167, 3356, 3390, 3622, 3759
Hpy188III	TCNNGA	9 cut(s)	512, 1964, 2481, 2665, 2854, 3677, 3890, 3968, 3998
Hpy8I	GTNNAC	9 cut(s)	998, 2065, 2448, 2698, 3167, 3356, 3390, 3622, 3759
Hpy99I	CGWCG	2 cut(s)	197, 2265
HpyCH4IV	ACGT	3 cut(s)	195, 1765, 2719
HpySE526I	ACGT	3 cut(s)	195, 1765, 2719
Hsp92I	GRCGYC	2 cut(s)	2176, 3991
HspAI	GCGC	2 cut(s)	234, 568
Ksp22I	TGATCA	4 cut(s)	670, 1645, 2866, 3718
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	7 cut(s)	112, 622, 1018, 1562, 1862, 1940, 2500
Lsp1109I	GCAGC	8 cut(s)	215, 346, 914, 1101, 2077, 2740, 2912, 3289
MaeII	ACGT	3 cut(s)	195, 1765, 2719
MaeIII	GTNAC	7 cut(s)	449, 902, 949, 1578, 1586, 2374, 2977
MbiI	CCGCTC	1 cut(s)	24
MfeI	CAATTG	2 cut(s)	1383, 3181
MflI	RGATCY	5 cut(s)	2057, 2402, 3368, 3873, 3944
MhlI	GDGCHC	8 cut(s)	700, 829, 913, 1023, 1567, 1814, 1867, 3070
MlyI	GAGTC	6 cut(s)	309, 514, 872, 1085, 2035, 2620
MmeI	TCCRAC	4 cut(s)	1432, 2390, 2654, 2867
Mph1103I	ATGCAT	4 cut(s)	637, 861, 1729, 2337
MroXI	GAANNNNTTC	3 cut(s)	726, 1251, 3514
MslI	CAYNNNNRTG	5 cut(s)	246, 1570, 2508, 2791, 4040
MspA1I	CMGCKG	5 cut(s)	956, 1114, 1538, 2519, 3280
MspI	CCGG	2 cut(s)	132, 579
MspR9I	CCNGG	4 cut(s)	133, 989, 2370, 3010
MunI	CAATTG	2 cut(s)	1383, 3181
Mva1269I	GAATGC	6 cut(s)	207, 859, 2335, 2577, 3460, 4122
MvaI	CCWGG	3 cut(s)	989, 2370, 3010
MvnI	CGCG	2 cut(s)	213, 1365
NciI	CCSGG	1 cut(s)	133
NcoI	CCATGG	3 cut(s)	217, 1303, 2320
NdeI	CATATG	4 cut(s)	2230, 2310, 2342, 3584
NmeAIII	GCCGAG	1 cut(s)	3354
NmuCI	GTSAC	4 cut(s)	449, 902, 949, 1578
NsbI	TGCGCA	1 cut(s)	569
NsiI	ATGCAT	4 cut(s)	637, 861, 1729, 2337
NspI	RCATGY	8 cut(s)	1151, 1275, 2507, 2760, 3149, 3165, 3388, 3527
NspV	TTCGAA	2 cut(s)	273, 2927
OliI	CACNNNNGTG	1 cut(s)	1570
PagI	TCATGA	1 cut(s)	3889
PciI	ACATGT	2 cut(s)	1271, 2756
PciSI	GCTCTTC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	2 cut(s)	826, 1261
PctI	GAATGC	6 cut(s)	207, 859, 2335, 2577, 3460, 4122
PdmI	GAANNNNTTC	3 cut(s)	726, 1251, 3514
PfeI	GAWTC	4 cut(s)	2924, 3548, 3569, 3879
PflMI	CCANNNNNTGG	2 cut(s)	1130, 2165
PfoI	TCCNGGA	1 cut(s)	3008
Ple19I	CGATCG	1 cut(s)	820
PleI	GAGTC	6 cut(s)	308, 514, 872, 1085, 2034, 2620
PpsI	GAGTC	6 cut(s)	308, 514, 872, 1085, 2034, 2620
Ppu21I	YACGTR	2 cut(s)	1766, 2720
PpuMI	RGGWCCY	1 cut(s)	3247
PscI	ACATGT	2 cut(s)	1271, 2756
PshAI	GACNNNNGTC	1 cut(s)	2144
PshBI	ATTAAT	2 cut(s)	324, 4013
PsiI	TTATAA	1 cut(s)	2117
Psp124BI	GAGCTC	1 cut(s)	1867
Psp5II	RGGWCCY	1 cut(s)	3247
Psp6I	CCWGG	3 cut(s)	987, 2368, 3008
PspFI	CCCAGC	3 cut(s)	1807, 2265, 4106
PspGI	CCWGG	3 cut(s)	987, 2368, 3008
PspPI	GGNCC	5 cut(s)	251, 780, 985, 2386, 3247
PspPPI	RGGWCCY	1 cut(s)	3247
PstNI	CAGNNNCTG	3 cut(s)	3987, 4106, 4126
PsuI	RGATCY	5 cut(s)	2057, 2402, 3368, 3873, 3944
PvuI	CGATCG	1 cut(s)	820
PvuII	CAGCTG	5 cut(s)	956, 1114, 1538, 2519, 3280
RsaI	GTAC	8 cut(s)	583, 847, 970, 1316, 1504, 2205, 2271, 2718
RsaNI	GTAC	8 cut(s)	582, 846, 969, 1315, 1503, 2204, 2270, 2717
RseI	CAYNNNNRTG	5 cut(s)	246, 1570, 2508, 2791, 4040
SacI	GAGCTC	1 cut(s)	1867
SapI	GCTCTTC	1 cut(s)	14
Sau96I	GGNCC	5 cut(s)	251, 780, 985, 2386, 3247
SchI	GAGTC	6 cut(s)	309, 514, 872, 1085, 2035, 2620
ScrFI	CCNGG	4 cut(s)	133, 989, 2370, 3010
SduI	GDGCHC	8 cut(s)	700, 829, 913, 1023, 1567, 1814, 1867, 3070
SfcI	CTRYAG	4 cut(s)	2398, 2802, 3082, 3140
SfuI	TTCGAA	2 cut(s)	273, 2927
SinI	GGWCC	3 cut(s)	780, 2386, 3247
SmiMI	CAYNNNNRTG	5 cut(s)	246, 1570, 2508, 2791, 4040
SmlI	CTYRAG	1 cut(s)	849
SmoI	CTYRAG	1 cut(s)	849
SsiI	CCGC	7 cut(s)	24, 231, 538, 1220, 2173, 2659, 2726
SspI	AATATT	1 cut(s)	2822
SstI	GAGCTC	1 cut(s)	1867
StyD4I	CCNGG	4 cut(s)	131, 987, 2368, 3008
StyI	CCWWGG	6 cut(s)	202, 217, 1303, 1558, 2142, 2320
TaiI	ACGT	3 cut(s)	198, 1768, 2722
TaqI	TCGA	8 cut(s)	104, 192, 273, 1167, 1934, 2260, 2853, 2927
TatI	WGTACW	2 cut(s)	845, 968
TauI	GCSGC	4 cut(s)	27, 234, 1222, 2176
TfiI	GAWTC	4 cut(s)	2924, 3548, 3569, 3879
TseFI	GTSAC	4 cut(s)	449, 902, 949, 1578
TseI	GCWGC	8 cut(s)	228, 334, 927, 1114, 2090, 2728, 2900, 3277
Tsp45I	GTSAC	4 cut(s)	449, 902, 949, 1578
TspGWI	ACGGA	3 cut(s)	2448, 2550, 3957
Van91I	CCANNNNNTGG	2 cut(s)	1130, 2165
VpaK11BI	GGWCC	3 cut(s)	780, 2386, 3247
VspI	ATTAAT	2 cut(s)	324, 4013
XagI	CCTNNNNNAGG	1 cut(s)	3174
XapI	RAATTY	8 cut(s)	1685, 1994, 2125, 2302, 3448, 3773, 3802, 4140
XceI	RCATGY	8 cut(s)	1151, 1275, 2507, 2760, 3149, 3165, 3388, 3527
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2159, 2166
XmiI	GTMKAC	2 cut(s)	2697, 3166
XmnI	GAANNNNTTC	3 cut(s)	726, 1251, 3514
Zsp2I	ATGCAT	4 cut(s)	637, 861, 1729, 2337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.