Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Forward (+)

25678158 .. 25679050

Gene Structure 893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00237930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGAGAAGAAGAAGAGCGCCTCGTGGGGTCCGCAAAGTGGTCAATATCCGGGAGAAGTGTCGCCCCCGTGTTTCCTTCACCTACCTTCTCACCCGTCGATAAGGGAGCTTCCTTATTTAGTTGCCGGGTCGGGTTCGCAAATCTTGGTCTATGAGTTGGAACCGGGAACCATGATGAGGTCGTTCGACGTTTTCCAAGGCATTTGCGTCCATGGGATTTGCTGCGGCGCTACTCATACCGATGGCCCCGAGGGAACCGTTGCTTTCGAAATCGCCGTGTTTGGGGAAAAGAGAGTCAAGGTGTTTAGATTGGAGATTAATTTGGGGCAGCAAGTCGGTGTTGGTCCGAGGCTATTGCACTTGTTGCCCAACTTTGGGAATTGGGTCTTGGATGTTTCCTTCATCAAGCATGGGGAAGATGCATCTTTGGAGGAAGAGGTATTGGTATGTGGAGATATACGTGGAAATCTTGTTTTGTTCCCTTTGTTGAAGAGTGTGTTGTCTGGGCACATTGGTCGCTTCGATGTTAAAATATCTCCAGCAAGTTGTTTCAAAGGAGCTCATGGGATATCAAGCATCTCTAGTGTTACCGTTGCTAGACTAAGTTCTAATCGATTGAAATATGCTCGACCGGAGCAGATGGGTGTATATGCTATCCGGAATATGACAAAGATAGGAATGATTTGGAATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

231

Amino Acids

25.22

Weight (kDa)

8.22

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	657
AciI	CCGC	2 cut(s)	32, 225
AcsI	RAATTY	1 cut(s)	688
AfiI	CCNNNNNNNGG	5 cut(s)	38, 177, 282, 374, 375
AgsI	TTSAA	3 cut(s)	490, 553, 619
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AluBI	AGCT	2 cut(s)	109, 560
AluI	AGCT	2 cut(s)	109, 560
Alw21I	GWGCWC	1 cut(s)	562
Ama87I	CYCGRG	1 cut(s)	248
Aor13HI	TCCGGA	1 cut(s)	657
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	2 cut(s)	222, 328
ApoI	RAATTY	1 cut(s)	688
AseI	ATTAAT	1 cut(s)	318
AspLEI	GCGC	2 cut(s)	20, 230
AspS9I	GGNCC	3 cut(s)	29, 245, 344
AsuC2I	CCSGG	3 cut(s)	51, 127, 165
AsuHPI	GGTGA	2 cut(s)	71, 83
AsuII	TTCGAA	1 cut(s)	267
AvaI	CYCGRG	1 cut(s)	248
AvaII	GGWCC	2 cut(s)	29, 344
BaeGI	GKGCMC	1 cut(s)	510
BanII	GRGCYC	1 cut(s)	562
BauI	CACGAG	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	562
BbvI	GCAGC	2 cut(s)	209, 340
BccI	CCATC	2 cut(s)	236, 634
BceAI	ACGGC	1 cut(s)	260
BcgI	CGANNNNNNTGC	4 cut(s)	337, 371, 497, 531
BcnI	CCSGG	3 cut(s)	51, 127, 165
BfaI	CTAG	2 cut(s)	582, 597
BfoI	RGCGCY	2 cut(s)	21, 231
BisI	GCNGC	3 cut(s)	223, 226, 329
BlsI	GCNGC	3 cut(s)	224, 227, 330
Bme1390I	CCNGG	3 cut(s)	51, 127, 165
Bme18I	GGWCC	2 cut(s)	29, 344
BmeT110I	CYCGRG	1 cut(s)	248
BmgT120I	GGNCC	3 cut(s)	29, 245, 344
BmiI	GGNNCC	5 cut(s)	30, 162, 169, 247, 256
BmrFI	CCNGG	3 cut(s)	51, 127, 165
BmsI	GCATC	3 cut(s)	409, 431, 585
BpmI	CTGGAG	1 cut(s)	522
Bpu14I	TTCGAA	1 cut(s)	267
BpuMI	CCSGG	3 cut(s)	51, 127, 165
Bsa29I	ATCGAT	1 cut(s)	613
BsaAI	YACGTR	1 cut(s)	461
BsaJI	CCNNGG	4 cut(s)	196, 211, 249, 347
BsaWI	WCCGGW	2 cut(s)	631, 657
Bsc4I	CCNNNNNNNGG	5 cut(s)	38, 177, 282, 374, 375
BseAI	TCCGGA	1 cut(s)	657
BseCI	ATCGAT	1 cut(s)	613
BseDI	CCNNGG	4 cut(s)	196, 211, 249, 347
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	5 cut(s)	38, 177, 282, 374, 375
BseSI	GKGCMC	1 cut(s)	510
BseXI	GCAGC	2 cut(s)	209, 340
Bsh1285I	CGRYCG	1 cut(s)	632
BshFI	GGCC	1 cut(s)	246
BshVI	ATCGAT	1 cut(s)	613
BsiEI	CGRYCG	1 cut(s)	632
BsiHKAI	GWGCWC	1 cut(s)	562
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	5 cut(s)	50, 126, 164, 632, 658
BslI	CCNNNNNNNGG	5 cut(s)	38, 177, 282, 374, 375
BsnI	GGCC	1 cut(s)	246
BsoBI	CYCGRG	1 cut(s)	248
Bsp119I	TTCGAA	1 cut(s)	267
Bsp1286I	GDGCHC	2 cut(s)	510, 562
Bsp13I	TCCGGA	1 cut(s)	657
Bsp19I	CCATGG	1 cut(s)	211
BspACI	CCGC	2 cut(s)	32, 225
BspANI	GGCC	1 cut(s)	246
BspDI	ATCGAT	1 cut(s)	613
BspEI	TCCGGA	1 cut(s)	657
BspLI	GGNNCC	5 cut(s)	30, 162, 169, 247, 256
BspQI	GCTCTTC	1 cut(s)	8
BspT104I	TTCGAA	1 cut(s)	267
BssECI	CCNNGG	4 cut(s)	196, 211, 249, 347
BssSI	CACGAG	1 cut(s)	22
BssT1I	CCWWGG	2 cut(s)	196, 211
Bst2BI	CACGAG	1 cut(s)	22
Bst4CI	ACNGT	2 cut(s)	259, 592
Bst6I	CTCTTC	3 cut(s)	8, 429, 485
BstAPI	GCANNNNNTGC	1 cut(s)	364
BstBAI	YACGTR	1 cut(s)	461
BstBI	TTCGAA	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	602
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	397
BstH2I	RGCGCY	2 cut(s)	21, 231
BstHHI	GCGC	2 cut(s)	20, 230
BstMCI	CGRYCG	1 cut(s)	632
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstSCI	CCNGG	3 cut(s)	49, 125, 163
BstSLI	GKGCMC	1 cut(s)	510
BstV1I	GCAGC	2 cut(s)	209, 340
Bsu15I	ATCGAT	1 cut(s)	613
BsuRI	GGCC	1 cut(s)	246
BsuTUI	ATCGAT	1 cut(s)	613
BtgI	CCRYGG	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	397
CfoI	GCGC	2 cut(s)	20, 230
Cfr13I	GGNCC	3 cut(s)	29, 245, 344
ClaI	ATCGAT	1 cut(s)	613
CseI	GACGC	1 cut(s)	196
CviAII	CATG	4 cut(s)	172, 212, 410, 563
CviJI	RGCY	4 cut(s)	109, 246, 352, 560
CviKI_1	RGCY	4 cut(s)	109, 246, 352, 560
DdeI	CTNAG	1 cut(s)	602
Eam1104I	CTCTTC	3 cut(s)	8, 429, 485
EarI	CTCTTC	3 cut(s)	8, 429, 485
Ecl136II	GAGCTC	1 cut(s)	560
Eco130I	CCWWGG	2 cut(s)	196, 211
Eco24I	GRGCYC	1 cut(s)	562
Eco32I	GATATC	1 cut(s)	570
Eco47I	GGWCC	2 cut(s)	29, 344
Eco53kI	GAGCTC	1 cut(s)	560
Eco88I	CYCGRG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	560
EcoRV	GATATC	1 cut(s)	570
EcoT14I	CCWWGG	2 cut(s)	196, 211
EcoT22I	ATGCAT	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	562
ErhI	CCWWGG	2 cut(s)	196, 211
FaeI	CATG	4 cut(s)	175, 215, 413, 566
FatI	CATG	4 cut(s)	171, 211, 409, 562
Fnu4HI	GCNGC	3 cut(s)	223, 226, 329
FokI	GGATG	1 cut(s)	404
FriOI	GRGCYC	1 cut(s)	562
Fsp4HI	GCNGC	3 cut(s)	223, 226, 329
FspBI	CTAG	2 cut(s)	582, 597
GlaI	GCGC	2 cut(s)	19, 229
GluI	GCNGC	3 cut(s)	223, 226, 329
GsuI	CTGGAG	1 cut(s)	522
HaeII	RGCGCY	2 cut(s)	21, 231
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	5 cut(s)	50, 126, 164, 632, 658
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	2 cut(s)	20, 230
Hin1II	CATG	4 cut(s)	175, 215, 413, 566
Hin6I	GCGC	2 cut(s)	18, 228
HinP1I	GCGC	2 cut(s)	18, 228
HinfI	GANTC	1 cut(s)	294
HpaII	CCGG	5 cut(s)	50, 126, 164, 632, 658
HphI	GGTGA	2 cut(s)	71, 83
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	1 cut(s)	658
Hpy99I	CGWCG	2 cut(s)	100, 191
HpyAV	CCTTC	3 cut(s)	86, 96, 409
HpyCH4III	ACNGT	2 cut(s)	259, 592
HpyCH4IV	ACGT	2 cut(s)	189, 460
HpyCH4V	TGCA	2 cut(s)	358, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
HpyF3I	CTNAG	1 cut(s)	602
HpySE526I	ACGT	2 cut(s)	189, 460
Hsp92II	CATG	4 cut(s)	175, 215, 413, 566
HspAI	GCGC	2 cut(s)	18, 228
Kpn2I	TCCGGA	1 cut(s)	657
LguI	GCTCTTC	1 cut(s)	8
LmnI	GCTCC	3 cut(s)	106, 557, 634
LpnPI	CCDG	7 cut(s)	63, 139, 177, 489, 552, 645, 671
Lsp1109I	GCAGC	2 cut(s)	209, 340
LweI	GCATC	3 cut(s)	409, 431, 585
MaeI	CTAG	2 cut(s)	582, 597
MaeII	ACGT	2 cut(s)	189, 460
MaeIII	GTNAC	1 cut(s)	586
MboII	GAAGA	6 cut(s)	19, 22, 25, 428, 446, 502
MhlI	GDGCHC	2 cut(s)	510, 562
MluCI	AATT	3 cut(s)	319, 379, 688
MlyI	GAGTC	1 cut(s)	303
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	6 cut(s)	31, 171, 244, 342, 424, 430
Mph1103I	ATGCAT	1 cut(s)	424
MroI	TCCGGA	1 cut(s)	657
MseI	TTAA	2 cut(s)	318, 528
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	5 cut(s)	50, 126, 164, 632, 658
MspR9I	CCNGG	3 cut(s)	51, 127, 165
MwoI	GCNNNNNNNGC	1 cut(s)	364
NciI	CCSGG	3 cut(s)	51, 127, 165
NcoI	CCATGG	1 cut(s)	211
NlaIII	CATG	4 cut(s)	175, 215, 413, 566
NlaIV	GGNNCC	5 cut(s)	30, 162, 169, 247, 256
NsiI	ATGCAT	1 cut(s)	424
NspV	TTCGAA	1 cut(s)	267
PciSI	GCTCTTC	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PfoI	TCCNGGA	1 cut(s)	49
PkrI	GCNGC	3 cut(s)	224, 227, 330
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
Ppu21I	YACGTR	1 cut(s)	461
PshBI	ATTAAT	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	562
PspN4I	GGNNCC	5 cut(s)	30, 162, 169, 247, 256
PspPI	GGNCC	3 cut(s)	29, 245, 344
RseI	CAYNNNNRTG	1 cut(s)	240
SacI	GAGCTC	1 cut(s)	562
SapI	GCTCTTC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	318, 528
SatI	GCNGC	3 cut(s)	223, 226, 329
Sau96I	GGNCC	3 cut(s)	29, 245, 344
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	3 cut(s)	51, 127, 165
SduI	GDGCHC	2 cut(s)	510, 562
SetI	ASST	9 cut(s)	84, 88, 111, 182, 192, 303, 441, 463, 562
SfaNI	GCATC	3 cut(s)	409, 431, 585
SfuI	TTCGAA	1 cut(s)	267
SinI	GGWCC	2 cut(s)	29, 344
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	3 cut(s)	319, 379, 688
SsiI	CCGC	2 cut(s)	32, 225
SspMI	CTAG	2 cut(s)	582, 597
SstI	GAGCTC	1 cut(s)	562
StyD4I	CCNGG	3 cut(s)	49, 125, 163
StyI	CCWWGG	2 cut(s)	196, 211
TaaI	ACNGT	2 cut(s)	259, 592
TaiI	ACGT	2 cut(s)	192, 463
TaqI	TCGA	6 cut(s)	98, 186, 267, 522, 613, 628
TasI	AATT	3 cut(s)	319, 379, 688
TauI	GCSGC	1 cut(s)	228
Tru1I	TTAA	2 cut(s)	318, 528
Tru9I	TTAA	2 cut(s)	318, 528
TseI	GCWGC	2 cut(s)	222, 328
TspDTI	ATGAA	1 cut(s)	391
VpaK11BI	GGWCC	2 cut(s)	29, 344
VspI	ATTAAT	1 cut(s)	318
XapI	RAATTY	1 cut(s)	688
XspI	CTAG	2 cut(s)	582, 597
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.