Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Forward (+)

20464260 .. 20466685

Gene Structure 2426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g19610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCTATGGCAGTGGAGAAGAAGAGCGGTTCATGGCGTCTGCAGAGCGGCCAATACCTCGGAGAAATCTCAGCCCTTTGCTTCCTCCACCTTCCTTCTCCCCTCTCTGCTCTCCCTTACCTACTCGCAGGGTCGGGTTCGCAAATCATGGTGTATGATTTGGAAATGGGAACAATGGTGAGATCGTTCGATGTGTTCCAAGGGATTCGAGTGCACGGGATAATCTGTTGTAGCTCTAGTTCTAGTACTGAACGCGCAGAGGGAACACTGGCGTCTTCTGTTGCTTTCAAAATTTCCGTGTTCGGCGAAAGGAGAGTGAAGATGTTTAGTTTGCAGATTGAAACGGTGCAGCAAGTCAATGTCAGTTTGACTCTATTGCAATCCTTGCCAAAGTTCTCAAACTGGGTCTTGGATGTTTCCTTCGTTAAGGGCTCTGTGAGTGGCTCAAATGGGGAAGGTGATTGTCTTGCTATAGGGTGTAGTGACAACTCTGTCCATCTATGGGATCTCTTAGCTTCTGCTGTGGTTCTTGAAGTTCAACATCCTGAGAGGACCCTTCTTTATTCAATGCGGTTATGGGGAGACACTCTTCAAGCTCTCCGTGTTGCATCTGGTACTATCTATAATGAGATCATTGTATGGAAAGTGGTGTCTCGGTATAATGCTGCATCTTTAACAAATCAAGTAGAAGACGGCATTGATCAGATAAATTCATTCTCAGACTCTGTTCAGCCTCATGCTTGCCAGTATGAAGCTGTTCATGTAAGCAAACTTGTTGGACACGAAGGTTCCATCTTTCGGATAGCCTGGTCCTTTAATGGAACCAAATTGGTTTCTGTCTCTGACGATCGTAGTGCTCGTGTCTGGGCAGTTTGTGCAGAAACAAAGCATTCTGAGAATCCAGGAGAGTCCATTGGCCTTGTGCTGTTTGGTCACAATGCCCGAGTTTGGGACTGCTGTATTCTTGGTTCATTGATTGTCACTGCTGGTGAGGATTGCACATGTCGTGTGTGGGGACTGGATGGTAAACACCTTCAGATGATCAAGGAGCACACAGGAAGGGGCATATGGCGTTGTTTGTATCGATCCAAACTCTTCACTTCTCATTACTGCTGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

374

Amino Acids

41.15

Weight (kDa)

6.45

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	491
AccBSI	CCGCTC	2 cut(s)	27, 48
AccII	CGCG	1 cut(s)	255
AciI	CCGC	3 cut(s)	27, 48, 571
AclWI	GGATC	2 cut(s)	513, 1080
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	291, 709
AcuI	CTGAAG	1 cut(s)	1019
AcyI	GRCGYC	2 cut(s)	37, 272
AfaI	GTAC	2 cut(s)	247, 616
AfiI	CCNNNNNNNGG	4 cut(s)	502, 798, 948, 949
AflIII	ACRYGT	1 cut(s)	1001
AgsI	TTSAA	6 cut(s)	289, 341, 533, 539, 567, 593
AjnI	CCWGG	2 cut(s)	806, 901
AluBI	AGCT	4 cut(s)	234, 515, 596, 755
AluI	AGCT	4 cut(s)	234, 515, 596, 755
Alw21I	GWGCWC	3 cut(s)	216, 859, 1053
Alw26I	GTCTC	3 cut(s)	576, 657, 844
Alw44I	GTGCAC	1 cut(s)	212
AlwI	GGATC	2 cut(s)	513, 1080
AlwNI	CAGNNNCTG	1 cut(s)	725
Ama87I	CYCGRG	1 cut(s)	942
AoxI	GGCC	2 cut(s)	49, 916
ApaLI	GTGCAC	1 cut(s)	212
ApeKI	GCWGC	2 cut(s)	349, 665
ApoI	RAATTY	2 cut(s)	291, 709
Asp700I	GAANNNNTTC	1 cut(s)	756
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	2 cut(s)	552, 810
AsuHPI	GGTGA	3 cut(s)	190, 470, 1001
AvaI	CYCGRG	1 cut(s)	942
AvaII	GGWCC	2 cut(s)	552, 810
BaeGI	GKGCMC	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	434
BauI	CACGAG	1 cut(s)	858
BbsI	GAAGAC	2 cut(s)	267, 696
Bbv12I	GWGCWC	3 cut(s)	216, 859, 1053
BbvI	GCAGC	2 cut(s)	361, 652
BccI	CCATC	3 cut(s)	504, 800, 1016
BceAI	ACGGC	1 cut(s)	709
BcgI	CGANNNNNNTGC	2 cut(s)	836, 870
BciT130I	CCWGG	2 cut(s)	808, 903
BclI	TGATCA	2 cut(s)	700, 1041
BcoDI	GTCTC	3 cut(s)	576, 657, 844
BfaI	CTAG	2 cut(s)	237, 243
BfmI	CTRYAG	2 cut(s)	41, 471
BisI	GCNGC	3 cut(s)	49, 350, 666
BlsI	GCNGC	3 cut(s)	50, 351, 667
BmcAI	AGTACT	1 cut(s)	247
Bme1390I	CCNGG	2 cut(s)	808, 903
Bme18I	GGWCC	2 cut(s)	552, 810
BmeT110I	CYCGRG	1 cut(s)	942
BmgT120I	GGNCC	2 cut(s)	552, 810
BmiI	GGNNCC	3 cut(s)	554, 790, 823
BmrFI	CCNGG	2 cut(s)	808, 903
BmrI	ACTGGG	1 cut(s)	412
BmsI	GCATC	2 cut(s)	617, 677
BmuI	ACTGGG	1 cut(s)	412
BpiI	GAAGAC	2 cut(s)	267, 696
Bsa29I	ATCGAT	1 cut(s)	1084
BsaHI	GRCGYC	2 cut(s)	37, 272
BsaJI	CCNNGG	2 cut(s)	58, 199
Bsc4I	CCNNNNNNNGG	4 cut(s)	502, 798, 948, 949
Bse1I	ACTGG	4 cut(s)	273, 407, 745, 1023
BseBI	CCWGG	2 cut(s)	808, 903
BseCI	ATCGAT	1 cut(s)	1084
BseDI	CCNNGG	2 cut(s)	58, 199
BseGI	GGATG	3 cut(s)	418, 541, 1027
BseLI	CCNNNNNNNGG	4 cut(s)	502, 798, 948, 949
BseMII	CTCAG	4 cut(s)	84, 537, 732, 885
BseNI	ACTGG	4 cut(s)	273, 407, 745, 1023
BseSI	GKGCMC	1 cut(s)	216
BseXI	GCAGC	2 cut(s)	361, 652
BsgI	GTGCAG	2 cut(s)	368, 897
Bsh1236I	CGCG	1 cut(s)	255
Bsh1285I	CGRYCG	1 cut(s)	850
BshFI	GGCC	2 cut(s)	51, 918
BshVI	ATCGAT	1 cut(s)	1084
BsiEI	CGRYCG	1 cut(s)	850
BsiHKAI	GWGCWC	3 cut(s)	216, 859, 1053
BsiHKCI	CYCGRG	1 cut(s)	942
BslFI	GGGAC	2 cut(s)	965, 1029
BslI	CCNNNNNNNGG	4 cut(s)	502, 798, 948, 949
BsmAI	GTCTC	3 cut(s)	576, 657, 844
BsmFI	GGGAC	2 cut(s)	965, 1029
BsmI	GAATGC	1 cut(s)	889
BsnI	GGCC	2 cut(s)	51, 918
BsoBI	CYCGRG	1 cut(s)	942
Bsp1286I	GDGCHC	4 cut(s)	216, 434, 859, 1053
Bsp143I	GATC	7 cut(s)	182, 505, 630, 700, 847, 1041, 1085
BspACI	CCGC	3 cut(s)	27, 48, 571
BspANI	GGCC	2 cut(s)	51, 918
BspCNI	CTCAG	4 cut(s)	83, 538, 731, 886
BspDI	ATCGAT	1 cut(s)	1084
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	3 cut(s)	554, 790, 823
BspMAI	CTGCAG	1 cut(s)	45
BspPI	GGATC	2 cut(s)	513, 1080
BspQI	GCTCTTC	1 cut(s)	17
BsrBI	CCGCTC	2 cut(s)	27, 48
BsrI	ACTGG	4 cut(s)	273, 407, 745, 1023
BssECI	CCNNGG	2 cut(s)	58, 199
BssMI	GATC	7 cut(s)	182, 505, 630, 700, 847, 1041, 1085
BssNI	GRCGYC	2 cut(s)	37, 272
BssSI	CACGAG	1 cut(s)	858
BssT1I	CCWWGG	1 cut(s)	199
Bst2BI	CACGAG	1 cut(s)	858
Bst2UI	CCWGG	2 cut(s)	808, 903
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	3 cut(s)	17, 594, 1100
BstACI	GRCGYC	2 cut(s)	37, 272
BstAPI	GCANNNNNTGC	2 cut(s)	385, 875
BstC8I	GCNNGC	1 cut(s)	742
BstDEI	CTNAG	5 cut(s)	70, 511, 546, 718, 894
BstF5I	GGATG	3 cut(s)	418, 541, 1027
BstFNI	CGCG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	7 cut(s)	185, 508, 633, 703, 850, 1044, 1088
BstMAI	GTCTC	3 cut(s)	576, 657, 844
BstMBI	GATC	7 cut(s)	182, 505, 630, 700, 847, 1041, 1085
BstMCI	CGRYCG	1 cut(s)	850
BstMWI	GCNNNNNNNGC	2 cut(s)	385, 875
BstNI	CCWGG	2 cut(s)	808, 903
BstNSI	RCATGY	1 cut(s)	1005
BstSCI	CCNGG	2 cut(s)	806, 901
BstSFI	CTRYAG	2 cut(s)	41, 471
BstSLI	GKGCMC	1 cut(s)	216
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	2 cut(s)	361, 652
BstV2I	GAAGAC	2 cut(s)	267, 696
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
Bsu15I	ATCGAT	1 cut(s)	1084
BsuRI	GGCC	2 cut(s)	51, 918
BsuTUI	ATCGAT	1 cut(s)	1084
BtsCI	GGATG	3 cut(s)	418, 541, 1027
BtsI	GCAGTG	2 cut(s)	18, 981
BtsIMutI	CAGTG	3 cut(s)	18, 266, 981
Cac8I	GCNNGC	1 cut(s)	742
CaiI	CAGNNNCTG	1 cut(s)	725
CfoI	GCGC	1 cut(s)	257
Cfr13I	GGNCC	2 cut(s)	552, 810
ClaI	ATCGAT	1 cut(s)	1084
CseI	GACGC	2 cut(s)	26, 261
Csp6I	GTAC	2 cut(s)	246, 615
CviAII	CATG	5 cut(s)	33, 148, 737, 761, 1002
CviQI	GTAC	2 cut(s)	246, 615
DdeI	CTNAG	5 cut(s)	70, 511, 546, 718, 894
DpnI	GATC	7 cut(s)	184, 507, 632, 702, 849, 1043, 1087
DpnII	GATC	7 cut(s)	182, 505, 630, 700, 847, 1041, 1085
DrdI	GACNNNNNNGTC	1 cut(s)	491
DseDI	GACNNNNNNGTC	1 cut(s)	491
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	3 cut(s)	17, 594, 1100
EarI	CTCTTC	3 cut(s)	17, 594, 1100
Eco130I	CCWWGG	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	434
Eco47I	GGWCC	2 cut(s)	552, 810
Eco57I	CTGAAG	1 cut(s)	1019
Eco88I	CYCGRG	1 cut(s)	942
EcoO109I	RGGNCCY	1 cut(s)	552
EcoRII	CCWGG	2 cut(s)	806, 901
EcoT14I	CCWWGG	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	5 cut(s)	36, 151, 740, 764, 1005
FaqI	GGGAC	2 cut(s)	965, 1029
FatI	CATG	5 cut(s)	32, 147, 736, 760, 1001
FauNDI	CATATG	1 cut(s)	1067
FbaI	TGATCA	2 cut(s)	700, 1041
Fnu4HI	GCNGC	3 cut(s)	49, 350, 666
FokI	GGATG	3 cut(s)	425, 528, 1034
FriOI	GRGCYC	1 cut(s)	434
Fsp4HI	GCNGC	3 cut(s)	49, 350, 666
FspBI	CTAG	2 cut(s)	237, 243
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	3 cut(s)	49, 350, 666
HaeIII	GGCC	2 cut(s)	51, 918
HgaI	GACGC	2 cut(s)	26, 261
HhaI	GCGC	1 cut(s)	257
Hin1I	GRCGYC	2 cut(s)	37, 272
Hin1II	CATG	5 cut(s)	36, 151, 740, 764, 1005
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HinfI	GANTC	5 cut(s)	205, 370, 722, 898, 908
HphI	GGTGA	3 cut(s)	190, 470, 1001
Hpy166II	GTNNAC	2 cut(s)	214, 1028
Hpy188I	TCNGA	7 cut(s)	62, 705, 721, 801, 844, 895, 1038
Hpy188III	TCNNGA	2 cut(s)	530, 545
Hpy8I	GTNNAC	2 cut(s)	214, 1028
HpyAV	CCTTC	8 cut(s)	101, 105, 430, 449, 566, 779, 1043, 1053
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4V	TGCA	9 cut(s)	43, 214, 334, 349, 379, 608, 668, 878, 999
HpyF10VI	GCNNNNNNNGC	2 cut(s)	385, 875
HpyF3I	CTNAG	5 cut(s)	70, 511, 546, 718, 894
Hsp92I	GRCGYC	2 cut(s)	37, 272
Hsp92II	CATG	5 cut(s)	36, 151, 740, 764, 1005
HspAI	GCGC	1 cut(s)	255
Ksp22I	TGATCA	2 cut(s)	700, 1041
Kzo9I	GATC	7 cut(s)	182, 505, 630, 700, 847, 1041, 1085
LguI	GCTCTTC	1 cut(s)	17
LmnI	GCTCC	1 cut(s)	1048
Lsp1109I	GCAGC	2 cut(s)	361, 652
LweI	GCATC	2 cut(s)	617, 677
MaeI	CTAG	2 cut(s)	237, 243
MaeIII	GTNAC	3 cut(s)	482, 932, 979
MalI	GATC	7 cut(s)	184, 507, 632, 702, 849, 1043, 1087
MbiI	CCGCTC	2 cut(s)	27, 48
MboI	GATC	7 cut(s)	182, 505, 630, 700, 847, 1041, 1085
MboII	GAAGA	7 cut(s)	31, 34, 267, 331, 581, 701, 1087
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	4 cut(s)	216, 434, 859, 1053
MluCI	AATT	3 cut(s)	291, 709, 827
MlyI	GAGTC	3 cut(s)	364, 716, 917
MmeI	TCCRAC	1 cut(s)	757
MnlI	CCTC	7 cut(s)	68, 95, 113, 253, 543, 744, 985
MroXI	GAANNNNTTC	1 cut(s)	756
MseI	TTAA	3 cut(s)	426, 674, 816
MspR9I	CCNGG	2 cut(s)	808, 903
Mva1269I	GAATGC	1 cut(s)	889
MvaI	CCWGG	2 cut(s)	808, 903
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	385, 875
NdeI	CATATG	1 cut(s)	1067
NdeII	GATC	7 cut(s)	182, 505, 630, 700, 847, 1041, 1085
NlaIII	CATG	5 cut(s)	36, 151, 740, 764, 1005
NlaIV	GGNNCC	3 cut(s)	554, 790, 823
NmuCI	GTSAC	3 cut(s)	482, 932, 979
NspI	RCATGY	1 cut(s)	1005
PciI	ACATGT	1 cut(s)	1001
PciSI	GCTCTTC	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	1 cut(s)	856
PctI	GAATGC	1 cut(s)	889
PdmI	GAANNNNTTC	1 cut(s)	756
PfeI	GAWTC	2 cut(s)	205, 898
PfoI	TCCNGGA	1 cut(s)	901
PkrI	GCNGC	3 cut(s)	50, 351, 667
Ple19I	CGATCG	1 cut(s)	850
PleI	GAGTC	3 cut(s)	364, 716, 916
PpsI	GAGTC	3 cut(s)	364, 716, 916
PpuMI	RGGWCCY	1 cut(s)	552
PscI	ACATGT	1 cut(s)	1001
Psp5II	RGGWCCY	1 cut(s)	552
Psp6I	CCWGG	2 cut(s)	806, 901
PspGI	CCWGG	2 cut(s)	806, 901
PspN4I	GGNNCC	3 cut(s)	554, 790, 823
PspPI	GGNCC	2 cut(s)	552, 810
PspPPI	RGGWCCY	1 cut(s)	552
PsrI	GAACNNNNNNTAC	4 cut(s)	223, 255, 952, 984
PstI	CTGCAG	1 cut(s)	45
PstNI	CAGNNNCTG	1 cut(s)	725
PsuI	RGATCY	1 cut(s)	505
PvuI	CGATCG	1 cut(s)	850
RsaI	GTAC	2 cut(s)	247, 616
RsaNI	GTAC	2 cut(s)	246, 615
SapI	GCTCTTC	1 cut(s)	17
SaqAI	TTAA	3 cut(s)	426, 674, 816
SatI	GCNGC	3 cut(s)	49, 350, 666
Sau3AI	GATC	7 cut(s)	182, 505, 630, 700, 847, 1041, 1085
Sau96I	GGNCC	2 cut(s)	552, 810
ScaI	AGTACT	1 cut(s)	247
SchI	GAGTC	3 cut(s)	364, 716, 917
ScrFI	CCNGG	2 cut(s)	808, 903
SduI	GDGCHC	4 cut(s)	216, 434, 859, 1053
SfaNI	GCATC	2 cut(s)	617, 677
SfcI	CTRYAG	2 cut(s)	41, 471
SinI	GGWCC	2 cut(s)	552, 810
Sse9I	AATT	3 cut(s)	291, 709, 827
SsiI	CCGC	3 cut(s)	27, 48, 571
SspMI	CTAG	2 cut(s)	237, 243
StyD4I	CCNGG	2 cut(s)	806, 901
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	1 cut(s)	346
TaqI	TCGA	3 cut(s)	189, 208, 1084
TasI	AATT	3 cut(s)	291, 709, 827
TatI	WGTACW	1 cut(s)	245
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	205, 898
Tru1I	TTAA	3 cut(s)	426, 674, 816
Tru9I	TTAA	3 cut(s)	426, 674, 816
TscAI	CASTG	3 cut(s)	18, 273, 988
TseFI	GTSAC	3 cut(s)	482, 932, 979
TseI	GCWGC	2 cut(s)	349, 665
Tsp45I	GTSAC	3 cut(s)	482, 932, 979
TspDTI	ATGAA	5 cut(s)	21, 702, 749, 765, 960
TspGWI	ACGGA	2 cut(s)	286, 590
TspRI	CASTG	3 cut(s)	18, 273, 988
VneI	GTGCAC	1 cut(s)	212
VpaK11BI	GGWCC	2 cut(s)	552, 810
XapI	RAATTY	2 cut(s)	291, 709
XceI	RCATGY	1 cut(s)	1005
XmnI	GAANNNNTTC	1 cut(s)	756
XspI	CTAG	2 cut(s)	237, 243
ZrmI	AGTACT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.