Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001928

Physical Location & Seq

Genomic Coordinates Reverse (-)

32391841 .. 32412090

Gene Structure 20250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG305300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTGTTTAGATGCATCTTTGGAGGAAGAGGTATTGGTATGTGGAGATATACGTGGAAATCTTGTTTTGCTCCCTTTGTTGAAGAGTGTGTTGCTGGGCTCATTGGTTGCATCTGATGTTAAAATATCTCCATCAAGTTGTTTCAGAGGAGCTCATGGGATATCAAGCATCTCCAGTGTTGCTGTTGCTAGACTAAGTTCTAATCAGATTGAAATATGCTTGGTCTTCCAAATACCACGTGGTGGATGGCGGCGTCCTGATTCCTATTATCTTGGTGATGTACCAGAGATAAAGAACTGCTTTGCATATGTTAAGCATCTAACTAATCCACCTGTGCTTTGTCCTTCAACCATACCGATCGATGTTGGTGCCGCTTCTAAGTGGAGGAACTTTCACGAGTTCGATCCAAATCGGCTATTTGAGGTCCAAAAGGGGGTGACTGAAATTGCACATATGGCCAAAGCTATTGTTGGAAAGAATGAGTATGAAGGCAGTGCTTCATCAAATAGATGTGCAGCCATCGAGGTGGAGATCGATCTCAATCCAGCATGGTTCACCTCCAGATTTTTGTTGTTCCAGCAAGGGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007049 GO:0007050 GO:0008150 GO:0008285 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010506 GO:0010507 GO:0016020 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0042127 GO:0044424 GO:0044444 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

196

Amino Acids

21.42

Weight (kDa)

6.08

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01860 AT4G01860
fragaria_vesca	FvH4_1g26470 FvH4_2g08080
malus_domestica	MD09G1293000.v1.1 MD17G1281300.v1.1 MD17G1281400.v1.1 MD17G1281500.v1.1 MD17G1281700.v1.1 MD17G1281800.v1.1
prunus_persica	Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1 Prupe.3G004200_v2.0.a1
pyrus_communis	pycom09g19610 pycom09g19620 pycom09g19630 pycom17g27900
rosa_chinensis	RchiOBHm_Chr3g0486381 RchiOBHm_Chr3g0486491 RchiOBHm_Chr3g0486501 RchiOBHm_Chr3g0486511
rosa_laevigata	RLG00000023079 RLG00000023084 RLG00000023086 RLG00000023087
rosa_multiflora	Rmu_sc0001857.1_g000004 Rmu_sc0003801.1_g000001 Rmu_sc0003801.1_g000026 Rmu_sc0011408.1_g000006
rosa_roxburghii	Rroxscaffold_1G00022380 Rroxscaffold_3G00237910 Rroxscaffold_3G00237930 Rroxscaffold_3G00237990 Rroxscaffold_6G00395820
rosa_rugosa	Rorug03G0224900
rosa_samantha	Rh3AG274900 Rh3BG310000 Rh3CG309200 Rh3DG305300 Rh3DG306000
rosa_wichuraiana	Rw3G024390 Rw3G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	368
AccB7I	CCANNNNNTGG	1 cut(s)	242
AciI	CCGC	2 cut(s)	250, 372
AclWI	GGATC	1 cut(s)	398
AcoI	YGGCCR	1 cut(s)	456
AcvI	CACGTG	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	253
AdeI	CACNNNGTG	1 cut(s)	242
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	3 cut(s)	242, 433, 583
AgsI	TTSAA	3 cut(s)	82, 212, 348
AluBI	AGCT	2 cut(s)	152, 464
AluI	AGCT	2 cut(s)	152, 464
Alw21I	GWGCWC	1 cut(s)	154
AlwI	GGATC	1 cut(s)	398
AoxI	GGCC	1 cut(s)	456
ApeKI	GCWGC	1 cut(s)	515
AspS9I	GGNCC	1 cut(s)	424
AsuHPI	GGTGA	3 cut(s)	287, 448, 547
AvaII	GGWCC	1 cut(s)	424
BalI	TGGCCA	1 cut(s)	458
BanI	GGYRCC	1 cut(s)	368
BanII	GRGCYC	2 cut(s)	101, 154
BauI	CACGAG	1 cut(s)	395
BbrPI	CACGTG	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	3 cut(s)	139, 240, 527
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BfaI	CTAG	1 cut(s)	189
BisI	GCNGC	3 cut(s)	251, 372, 516
BlsI	GCNGC	3 cut(s)	252, 373, 517
Bme18I	GGWCC	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	370
BmsI	GCATC	4 cut(s)	23, 119, 177, 325
BpiI	GAAGAC	1 cut(s)	217
BpmI	CTGGAG	2 cut(s)	157, 544
Bsa29I	ATCGAT	2 cut(s)	360, 534
BsaAI	YACGTR	2 cut(s)	53, 239
BsaBI	GATNNNNATC	2 cut(s)	408, 540
BsaHI	GRCGYC	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 433, 583
Bse1I	ACTGG	1 cut(s)	174
Bse8I	GATNNNNATC	2 cut(s)	408, 540
BseCI	ATCGAT	2 cut(s)	360, 534
BseGI	GGATG	1 cut(s)	251
BseJI	GATNNNNATC	2 cut(s)	408, 540
BseLI	CCNNNNNNNGG	3 cut(s)	242, 433, 583
BseNI	ACTGG	1 cut(s)	174
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	527
BseYI	CCCAGC	1 cut(s)	94
BsgI	GTGCAG	1 cut(s)	534
Bsh1285I	CGRYCG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	458
BshNI	GGYRCC	1 cut(s)	368
BshVI	ATCGAT	2 cut(s)	360, 534
BsiEI	CGRYCG	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	154
BslI	CCNNNNNNNGG	3 cut(s)	242, 433, 583
BsnI	GGCC	1 cut(s)	458
Bsp1286I	GDGCHC	2 cut(s)	101, 154
Bsp143I	GATC	4 cut(s)	357, 403, 531, 535
BspACI	CCGC	2 cut(s)	250, 372
BspANI	GGCC	1 cut(s)	458
BspDI	ATCGAT	2 cut(s)	360, 534
BspLI	GGNNCC	1 cut(s)	370
BspPI	GGATC	1 cut(s)	398
BspT107I	GGYRCC	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	174
BssMI	GATC	4 cut(s)	357, 403, 531, 535
BssNI	GRCGYC	1 cut(s)	253
BssSI	CACGAG	1 cut(s)	395
Bst2BI	CACGAG	1 cut(s)	395
Bst6I	CTCTTC	2 cut(s)	21, 77
BstACI	GRCGYC	1 cut(s)	253
BstBAI	YACGTR	2 cut(s)	53, 239
BstDEI	CTNAG	2 cut(s)	194, 378
BstF5I	GGATG	1 cut(s)	251
BstKTI	GATC	4 cut(s)	360, 406, 534, 538
BstMBI	GATC	4 cut(s)	357, 403, 531, 535
BstMCI	CGRYCG	1 cut(s)	360
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstV1I	GCAGC	1 cut(s)	527
BstV2I	GAAGAC	1 cut(s)	217
BstXI	CCANNNNNNTGG	1 cut(s)	526
Bsu15I	ATCGAT	2 cut(s)	360, 534
BsuRI	GGCC	1 cut(s)	458
BsuTUI	ATCGAT	2 cut(s)	360, 534
BtsCI	GGATG	1 cut(s)	251
BtsI	GCAGTG	1 cut(s)	499
BtsIMutI	CAGTG	2 cut(s)	181, 499
Cfr13I	GGNCC	1 cut(s)	424
ClaI	ATCGAT	2 cut(s)	360, 534
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	2 cut(s)	155, 549
CviJI	RGCY	6 cut(s)	99, 152, 415, 458, 464, 518
CviKI_1	RGCY	6 cut(s)	99, 152, 415, 458, 464, 518
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	2 cut(s)	194, 378
DpnI	GATC	4 cut(s)	359, 405, 533, 537
DpnII	GATC	4 cut(s)	357, 403, 531, 535
DraIII	CACNNNGTG	1 cut(s)	242
EaeI	YGGCCR	1 cut(s)	456
Eam1104I	CTCTTC	2 cut(s)	21, 77
EarI	CTCTTC	2 cut(s)	21, 77
Ecl136II	GAGCTC	1 cut(s)	152
Eco24I	GRGCYC	2 cut(s)	101, 154
Eco32I	GATATC	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	424
Eco53kI	GAGCTC	1 cut(s)	152
Eco72I	CACGTG	1 cut(s)	239
EcoICRI	GAGCTC	1 cut(s)	152
EcoRV	GATATC	1 cut(s)	162
EcoT22I	ATGCAT	1 cut(s)	16
EcoT38I	GRGCYC	2 cut(s)	101, 154
FaeI	CATG	2 cut(s)	158, 552
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FatI	CATG	2 cut(s)	154, 548
FauNDI	CATATG	2 cut(s)	307, 453
Fnu4HI	GCNGC	3 cut(s)	251, 372, 516
FokI	GGATG	1 cut(s)	258
FriOI	GRGCYC	2 cut(s)	101, 154
Fsp4HI	GCNGC	3 cut(s)	251, 372, 516
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	3 cut(s)	251, 372, 516
GsaI	CCCAGC	1 cut(s)	98
GsuI	CTGGAG	2 cut(s)	157, 544
HaeIII	GGCC	1 cut(s)	458
HgaI	GACGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	253
Hin1II	CATG	2 cut(s)	158, 552
HinfI	GANTC	1 cut(s)	260
HphI	GGTGA	3 cut(s)	287, 448, 547
Hpy166II	GTNNAC	1 cut(s)	555
Hpy188I	TCNGA	3 cut(s)	115, 146, 207
Hpy188III	TCNNGA	3 cut(s)	257, 395, 561
Hpy8I	GTNNAC	1 cut(s)	555
HpyAV	CCTTC	2 cut(s)	354, 482
HpyCH4IV	ACGT	2 cut(s)	52, 238
HpyCH4V	TGCA	5 cut(s)	14, 110, 305, 449, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	2 cut(s)	194, 378
HpySE526I	ACGT	2 cut(s)	52, 238
Hsp92I	GRCGYC	1 cut(s)	253
Hsp92II	CATG	2 cut(s)	158, 552
Kzo9I	GATC	4 cut(s)	357, 403, 531, 535
LmnI	GCTCC	2 cut(s)	75, 149
LpnPI	CCDG	7 cut(s)	80, 187, 270, 297, 345, 558, 574
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	4 cut(s)	23, 119, 177, 325
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	2 cut(s)	52, 238
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	4 cut(s)	359, 405, 533, 537
MboI	GATC	4 cut(s)	357, 403, 531, 535
MboII	GAAGA	3 cut(s)	38, 94, 217
MhlI	GDGCHC	2 cut(s)	101, 154
MlsI	TGGCCA	1 cut(s)	458
MluCI	AATT	1 cut(s)	444
MluNI	TGGCCA	1 cut(s)	458
MmeI	TCCRAC	1 cut(s)	451
MnlI	CCTC	7 cut(s)	16, 22, 140, 378, 415, 517, 568
Mox20I	TGGCCA	1 cut(s)	458
Mph1103I	ATGCAT	1 cut(s)	16
MscI	TGGCCA	1 cut(s)	458
MseI	TTAA	2 cut(s)	120, 312
MslI	CAYNNNNRTG	1 cut(s)	524
Msp20I	TGGCCA	1 cut(s)	458
MwoI	GCNNNNNNNGC	1 cut(s)	455
NdeI	CATATG	2 cut(s)	307, 453
NdeII	GATC	4 cut(s)	357, 403, 531, 535
NlaIII	CATG	2 cut(s)	158, 552
NlaIV	GGNNCC	1 cut(s)	370
NmuCI	GTSAC	1 cut(s)	436
NsiI	ATGCAT	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	260
PflMI	CCANNNNNTGG	1 cut(s)	242
PkrI	GCNGC	3 cut(s)	252, 373, 517
Ple19I	CGATCG	1 cut(s)	360
PmaCI	CACGTG	1 cut(s)	239
PmlI	CACGTG	1 cut(s)	239
Ppu21I	YACGTR	2 cut(s)	53, 239
Psp124BI	GAGCTC	1 cut(s)	154
PspCI	CACGTG	1 cut(s)	239
PspFI	CCCAGC	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	424
PvuI	CGATCG	1 cut(s)	360
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	524
SacI	GAGCTC	1 cut(s)	154
SaqAI	TTAA	2 cut(s)	120, 312
SatI	GCNGC	3 cut(s)	251, 372, 516
Sau3AI	GATC	4 cut(s)	357, 403, 531, 535
Sau96I	GGNCC	1 cut(s)	424
SduI	GDGCHC	2 cut(s)	101, 154
SetI	ASST	9 cut(s)	33, 55, 154, 241, 334, 426, 466, 528, 560
SfaNI	GCATC	4 cut(s)	23, 119, 177, 325
SinI	GGWCC	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	524
Sse9I	AATT	1 cut(s)	444
SsiI	CCGC	2 cut(s)	250, 372
SspMI	CTAG	1 cut(s)	189
SstI	GAGCTC	1 cut(s)	154
TaiI	ACGT	2 cut(s)	55, 241
TaqI	TCGA	4 cut(s)	360, 402, 522, 534
TasI	AATT	1 cut(s)	444
TauI	GCSGC	2 cut(s)	253, 374
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	2 cut(s)	120, 312
Tru9I	TTAA	2 cut(s)	120, 312
TscAI	CASTG	2 cut(s)	181, 499
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	1 cut(s)	515
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	2 cut(s)	489, 501
TspRI	CASTG	2 cut(s)	181, 499
Van91I	CCANNNNNTGG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	2 cut(s)	236, 243
XspI	CTAG	1 cut(s)	189
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.