FvH4_2g04520

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001292
Physical Location & Seq
Forward (+)
3491983 .. 3492708
726 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04520.t1

Sequence Viewer

Length: 726 bp
ATGTTCCCACGTAACAATCATATAGAGTACAAATATGTTGAAGAGCCTTATTACACTTACAGGGTTCGTAATCGTTTGGGGGACCAAGTACTGATACCATTGCGCGAGGCCATAGGTATGGTGAAGAAGCCATCAAGTAAAACCGATAACACATTGATTGCCCTGGAAACATATAGCAAGATATTCAGTACTGGGTCAAAAGAAGAAGAAGGCATCGTTGTTCTGTTTCATCATTGTATGAAGCTAATGGAGTTGTTTTCACCGAAGGGCAATATGGTCGACATGTTTGGGAATTTGAGCATCGGCAACGGGTCTAATAAGCTCCCTCACCAAATAGTGGCTCCCTTATTTAAGAAGGAAAAGGTAAAAGGACGTGAACCTTGTGGTGATGAAGTCGCAAAGCTCGAGTGGATGGGACTAGTGCAAGAGTTTGCAACCCAAGGCAAGCTCAAGAATTGTGTTGCAGTCTGTGACATGAGACCGAGCAAGACTGCTGCATGGGATTTTAAGGAGGCTGCTTCTATCTCAATAGGGTTATTGATTTCGGAGTTGAGTGAAAATCCATGGAAAGGAAAGATTTTCTCCTTTAGCGAATTTCCCAAGCTAAAGAAGATTGAAGGAGACGATCTTCGATCCAAATGCGAGTTCATAAGCCAGATGGAATGCACTGAGGGCCAGTTTGGTATTGCGGTGAGAAATCACTGTGGTGAGAAAACTCAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

242

Amino Acids

27.33

Weight (kDa)

8.38

Isoelectric Point (pI)

29.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7788 PF25043 152 - 222 3.8e-13 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 337
AccI GTMKAC 1 cut(s) 279
AccII CGCG 1 cut(s) 105
AciI CCGC 1 cut(s) 689
AclWI GGATC 1 cut(s) 627
AcsI RAATTY 2 cut(s) 292, 593
AfaI GTAC 3 cut(s) 29, 90, 190
AfiI CCNNNNNNNGG 2 cut(s) 337, 569
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 2 cut(s) 41, 617
AhlI ACTAGT 1 cut(s) 418
AjiI CACGTC 1 cut(s) 374
AjnI CCWGG 1 cut(s) 162
AjuI GAANNNNNNNTTGG 2 cut(s) 629, 661
AleI CACNNNNGTG 1 cut(s) 705
AluBI AGCT 6 cut(s) 244, 322, 403, 448, 604, 721
AluI AGCT 6 cut(s) 244, 322, 403, 448, 604, 721
Alw26I GTCTC 2 cut(s) 472, 615
AlwI GGATC 1 cut(s) 627
Ama87I CYCGRG 1 cut(s) 404
AoxI GGCC 2 cut(s) 108, 673
ApeKI GCWGC 2 cut(s) 494, 515
ApoI RAATTY 2 cut(s) 292, 593
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 82, 673
AsuHPI GGTGA 6 cut(s) 133, 252, 320, 398, 703, 719
AvaI CYCGRG 1 cut(s) 404
AvaII GGWCC 1 cut(s) 82
BbvI GCAGC 2 cut(s) 481, 502
BccI CCATC 3 cut(s) 139, 406, 652
BcgI CGANNNNNNTGC 4 cut(s) 259, 293, 621, 655
BciT130I CCWGG 1 cut(s) 164
BcoDI GTCTC 2 cut(s) 472, 615
BcuI ACTAGT 1 cut(s) 418
BfaI CTAG 1 cut(s) 419
BisI GCNGC 2 cut(s) 495, 516
BlsI GCNGC 2 cut(s) 496, 517
BmcAI AGTACT 2 cut(s) 90, 190
Bme1390I CCNGG 1 cut(s) 164
Bme18I GGWCC 1 cut(s) 82
BmeT110I CYCGRG 1 cut(s) 404
BmgBI CACGTC 1 cut(s) 374
BmgT120I GGNCC 2 cut(s) 82, 673
BmiI GGNNCC 2 cut(s) 83, 342
BmrFI CCNGG 1 cut(s) 164
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 2 cut(s) 222, 309
BmuI ACTGGG 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 434
BsaAI YACGTR 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 472
BsaJI CCNNGG 3 cut(s) 162, 439, 563
Bsc4I CCNNNNNNNGG 2 cut(s) 337, 569
Bse1I ACTGG 2 cut(s) 196, 676
Bse3DI GCAATG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 3 cut(s) 162, 439, 563
BseGI GGATG 1 cut(s) 417
BseLI CCNNNNNNNGG 2 cut(s) 337, 569
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 1 cut(s) 660
BseNI ACTGG 2 cut(s) 196, 676
BseXI GCAGC 2 cut(s) 481, 502
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 2 cut(s) 110, 675
BsiHKCI CYCGRG 1 cut(s) 404
BslFI GGGAC 2 cut(s) 95, 429
BslI CCNNNNNNNGG 2 cut(s) 337, 569
BsmAI GTCTC 2 cut(s) 472, 615
BsmBI CGTCTC 1 cut(s) 615
BsmFI GGGAC 2 cut(s) 95, 429
BsmI GAATGC 1 cut(s) 668
BsnI GGCC 2 cut(s) 110, 675
Bso31I GGTCTC 1 cut(s) 472
BsoBI CYCGRG 1 cut(s) 404
Bsp143I GATC 2 cut(s) 625, 632
Bsp19I CCATGG 1 cut(s) 563
BspACI CCGC 1 cut(s) 689
BspANI GGCC 2 cut(s) 110, 675
BspCNI CTCAG 1 cut(s) 661
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 83, 342
BspPI GGATC 1 cut(s) 627
BspQI GCTCTTC 1 cut(s) 36
BspTNI GGTCTC 1 cut(s) 472
BsrDI GCAATG 1 cut(s) 98
BsrI ACTGG 2 cut(s) 196, 676
BssECI CCNNGG 3 cut(s) 162, 439, 563
BssMI GATC 2 cut(s) 625, 632
BssT1I CCWWGG 2 cut(s) 439, 563
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 704
Bst6I CTCTTC 1 cut(s) 36
BstBAI YACGTR 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 446
BstDEI CTNAG 2 cut(s) 669, 717
BstDSI CCRYGG 1 cut(s) 563
BstF5I GGATG 1 cut(s) 417
BstFNI CGCG 1 cut(s) 105
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 2 cut(s) 628, 635
BstMAI GTCTC 2 cut(s) 472, 615
BstMBI GATC 2 cut(s) 625, 632
BstMWI GCNNNNNNNGC 1 cut(s) 672
BstNI CCWGG 1 cut(s) 164
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 162
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 2 cut(s) 481, 502
BstXI CCANNNNNNTGG 1 cut(s) 118
BsuRI GGCC 2 cut(s) 110, 675
BtgI CCRYGG 1 cut(s) 563
BtrI CACGTC 1 cut(s) 374
BtsCI GGATG 1 cut(s) 417
BtsIMutI CAGTG 2 cut(s) 666, 700
Cac8I GCNNGC 1 cut(s) 446
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 82, 673
Csp6I GTAC 3 cut(s) 28, 89, 189
CviAII CATG 4 cut(s) 283, 475, 498, 564
CviQI GTAC 3 cut(s) 28, 89, 189
DdeI CTNAG 2 cut(s) 669, 717
DpnI GATC 2 cut(s) 627, 634
DpnII GATC 2 cut(s) 625, 632
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco130I CCWWGG 2 cut(s) 439, 563
Eco31I GGTCTC 1 cut(s) 472
Eco47I GGWCC 1 cut(s) 82
Eco88I CYCGRG 1 cut(s) 404
EcoRII CCWGG 1 cut(s) 162
EcoT14I CCWWGG 2 cut(s) 439, 563
ErhI CCWWGG 2 cut(s) 439, 563
Esp3I CGTCTC 1 cut(s) 615
FaeI CATG 4 cut(s) 286, 478, 501, 567
FaqI GGGAC 2 cut(s) 95, 429
FatI CATG 4 cut(s) 282, 474, 497, 563
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 2 cut(s) 495, 516
FokI GGATG 1 cut(s) 424
Fsp4HI GCNGC 2 cut(s) 495, 516
FspBI CTAG 1 cut(s) 419
GlaI GCGC 1 cut(s) 104
GluI GCNGC 2 cut(s) 495, 516
HaeIII GGCC 2 cut(s) 110, 675
HhaI GCGC 1 cut(s) 105
Hin1II CATG 4 cut(s) 286, 478, 501, 567
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HphI GGTGA 6 cut(s) 133, 252, 320, 398, 703, 719
Hpy166II GTNNAC 2 cut(s) 280, 377
Hpy188I TCNGA 1 cut(s) 547
Hpy188III TCNNGA 1 cut(s) 451
Hpy8I GTNNAC 2 cut(s) 280, 377
HpyAV CCTTC 4 cut(s) 203, 259, 349, 611
HpyCH4III ACNGT 1 cut(s) 704
HpyCH4IV ACGT 2 cut(s) 10, 373
HpyCH4V TGCA 5 cut(s) 424, 434, 464, 497, 666
HpyF10VI GCNNNNNNNGC 1 cut(s) 672
HpyF3I CTNAG 2 cut(s) 669, 717
HpySE526I ACGT 2 cut(s) 10, 373
Hsp92II CATG 4 cut(s) 286, 478, 501, 567
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 625, 632
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 2 cut(s) 327, 346
LpnPI CCDG 6 cut(s) 46, 149, 176, 177, 668, 689
Lsp1109I GCAGC 2 cut(s) 481, 502
LweI GCATC 2 cut(s) 222, 309
MaeI CTAG 1 cut(s) 419
MaeII ACGT 2 cut(s) 10, 373
MaeIII GTNAC 2 cut(s) 11, 470
MalI GATC 2 cut(s) 627, 634
MboI GATC 2 cut(s) 625, 632
MboII GAAGA 6 cut(s) 53, 136, 215, 218, 620, 622
MluCI AATT 3 cut(s) 292, 454, 593
MnlI CCTC 4 cut(s) 100, 336, 505, 664
MseI TTAA 2 cut(s) 351, 507
MslI CAYNNNNRTG 2 cut(s) 116, 705
MspA1I CMGCKG 1 cut(s) 721
MspR9I CCNGG 1 cut(s) 164
Mva1269I GAATGC 1 cut(s) 668
MvaI CCWGG 1 cut(s) 164
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 672
NcoI CCATGG 1 cut(s) 563
NdeII GATC 2 cut(s) 625, 632
NlaIII CATG 4 cut(s) 286, 478, 501, 567
NlaIV GGNNCC 2 cut(s) 83, 342
NmuCI GTSAC 1 cut(s) 470
NspI RCATGY 1 cut(s) 286
OliI CACNNNNGTG 1 cut(s) 705
PaeR7I CTCGAG 1 cut(s) 404
PciI ACATGT 1 cut(s) 282
PciSI GCTCTTC 1 cut(s) 36
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PctI GAATGC 1 cut(s) 668
PflMI CCANNNNNTGG 1 cut(s) 337
PkrI GCNGC 2 cut(s) 496, 517
Ppu21I YACGTR 1 cut(s) 11
PscI ACATGT 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 2 cut(s) 83, 342
PspPI GGNCC 2 cut(s) 82, 673
PspXI VCTCGAGB 1 cut(s) 404
PvuII CAGCTG 1 cut(s) 721
RsaI GTAC 3 cut(s) 29, 90, 190
RsaNI GTAC 3 cut(s) 28, 89, 189
RseI CAYNNNNRTG 2 cut(s) 116, 705
SalI GTCGAC 1 cut(s) 278
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 2 cut(s) 351, 507
SatI GCNGC 2 cut(s) 495, 516
Sau3AI GATC 2 cut(s) 625, 632
Sau96I GGNCC 2 cut(s) 82, 673
ScaI AGTACT 2 cut(s) 90, 190
ScrFI CCNGG 1 cut(s) 164
SfaNI GCATC 2 cut(s) 222, 309
Sfr274I CTCGAG 1 cut(s) 404
SinI GGWCC 1 cut(s) 82
SlaI CTCGAG 1 cut(s) 404
SmiMI CAYNNNNRTG 2 cut(s) 116, 705
SmlI CTYRAG 2 cut(s) 404, 449
SmoI CTYRAG 2 cut(s) 404, 449
SpeI ACTAGT 1 cut(s) 418
Sse9I AATT 3 cut(s) 292, 454, 593
SsiI CCGC 1 cut(s) 689
SspMI CTAG 1 cut(s) 419
StyD4I CCNGG 1 cut(s) 162
StyI CCWWGG 2 cut(s) 439, 563
TaaI ACNGT 1 cut(s) 704
TaiI ACGT 2 cut(s) 13, 376
TaqI TCGA 3 cut(s) 279, 405, 631
TaqII GACCGA 1 cut(s) 496
TasI AATT 3 cut(s) 292, 454, 593
TatI WGTACW 3 cut(s) 27, 88, 188
Tru1I TTAA 2 cut(s) 351, 507
Tru9I TTAA 2 cut(s) 351, 507
TscAI CASTG 2 cut(s) 673, 707
TseFI GTSAC 1 cut(s) 470
TseI GCWGC 2 cut(s) 494, 515
Tsp45I GTSAC 1 cut(s) 470
TspDTI ATGAA 4 cut(s) 218, 254, 405, 637
TspRI CASTG 2 cut(s) 673, 707
Van91I CCANNNNNTGG 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 82
XapI RAATTY 2 cut(s) 292, 593
XceI RCATGY 1 cut(s) 286
XhoI CTCGAG 1 cut(s) 404
XmiI GTMKAC 1 cut(s) 279
XspI CTAG 1 cut(s) 419
ZrmI AGTACT 2 cut(s) 90, 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.