Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001292

Physical Location & Seq

Genomic Coordinates Forward (+)

5762401 .. 5763027

Gene Structure 627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG055400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGGTTATTGATTTCGGAACTGAGTGAATATCCATGGAAAGGAAAGGTTTTCTCTTTCAGTGATTTTCCCAAGCTTCATAAGTTTGAAGGAGAGAATCTTCGATCGAAATGTGAGTTCATGAAGCAGCATATGGAGTCTGCAAAGAAACTGAATTTTGGAGAGATTTACGACAGAGTGTTGGAGATTGCCATCAAAGAAAAGCTAGGGCACCATCAGATTCCCCAGCGGATTTTTGTGTTCACAGACAAGGATTTTGACATGGCATTCAAAAACGATTGGTTTGATGATTATGCAAAGGCTCTTTATGATTACAAAAATAGAGGGTATTTGTTTAATGTGCCAGACATGGTATTATGGAATCTTAAGGGTTCCATTTCTAAGCCAATGGCCATTTATAGCCTAGTGAAGGACCAGGATGTGGGGATGATTGTTACCGGGTTTTCTAGCAATCTGCTTAGGTTGTTCTTGAATGCAGAGTCGGATTCACGATCTTGTGCACCCCAATTTCAGGCACCTTATGGTTTCAGTTACAGTTTCGCACCTAAATTGATTCCTAAACTAGAGGATCTGTTTAATTGTGCAGTTTCTAGAGGTGAACTTAAGAACCTGCTTGTATTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

208

Amino Acids

24.15

Weight (kDa)

6.9

Isoelectric Point (pI)

31.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7788	PF25043	1 - 161	1.4e-34	Domain of unknown function (DUF7788)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001292)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04500 FvH4_2g04520 FvH4_2g04540 FvH4_2g04550
malus_domestica	MD05G1095800.v1.1 MD05G1215400.v1.1
prunus_persica	Prupe.8G139800_v2.0.a1 Prupe.8G139900_v2.0.a1 Prupe.8G140000_v2.0.a1 Prupe.8G140100_v2.0.a1 Prupe.8G140200_v2.0.a1
pyrus_communis	pycom05g09450
rosa_chinensis	RchiOBHm_Chr6g0254021 RchiOBHm_Chr6g0254031 RchiOBHm_Chr6g0254051 RchiOBHm_Chr6g0254071 RchiOBHm_Chr6g0254131
rosa_laevigata	RLG00000014941 RLG00000014945 RLG00000014947 RLG00000014948 RLG00000028713
rosa_multiflora	Rmu_co8068492.1_g000001 Rmu_co8292957.1_g000001 Rmu_sc0000010.1_g000029 Rmu_sc0001716.1_g000022 Rmu_sc0001716.1_g000026 Rmu_sc0001716.1_g000030
rosa_roxburghii	Rroxscaffold_7G00211140 Rroxscaffold_7G00211260 Rroxscaffold_7G00211290 Rroxscaffold_7G00211300
rosa_rugosa	Rorug05G0549000
rosa_samantha	Rh6AG065500 Rh6AG065600 Rh6AG065800 Rh6AG066400 Rh6BG058400 Rh6BG058600 Rh6BG059500 Rh6CG058500 Rh6CG058600 Rh6CG058700 Rh6CG058800 Rh6CG059100 Rh6CG059200 Rh6DG055300 Rh6DG055400 Rh6DG055500 Rh6DG055600 Rh6DG056000 Rh6DG056100
rosa_wichuraiana	Rw6G005770 Rw6G005790 Rw6G005830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	618
AccB1I	GGYRCC	2 cut(s)	210, 514
AccB7I	CCANNNNNTGG	1 cut(s)	421
AciI	CCGC	1 cut(s)	229
AclWI	GGATC	1 cut(s)	576
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	1 cut(s)	154
AfiI	CCNNNNNNNGG	4 cut(s)	41, 409, 421, 511
AflII	CTTAAG	2 cut(s)	365, 602
AgsI	TTSAA	3 cut(s)	89, 271, 472
AjnI	CCWGG	1 cut(s)	414
AluBI	AGCT	2 cut(s)	76, 205
AluI	AGCT	2 cut(s)	76, 205
Alw21I	GWGCWC	1 cut(s)	502
Alw44I	GTGCAC	1 cut(s)	498
AlwI	GGATC	1 cut(s)	576
AoxI	GGCC	1 cut(s)	390
ApaLI	GTGCAC	1 cut(s)	498
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	154
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AspS9I	GGNCC	1 cut(s)	412
AsuC2I	CCSGG	1 cut(s)	439
AsuHPI	GGTGA	1 cut(s)	608
AvaII	GGWCC	1 cut(s)	412
BaeGI	GKGCMC	2 cut(s)	213, 502
BalI	TGGCCA	1 cut(s)	392
BanI	GGYRCC	2 cut(s)	210, 514
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	2 cut(s)	200, 222
BciT130I	CCWGG	1 cut(s)	416
BcnI	CCSGG	1 cut(s)	439
BfaI	CTAG	5 cut(s)	206, 404, 447, 563, 591
BfrI	CTTAAG	2 cut(s)	365, 602
BfuAI	ACCTGC	1 cut(s)	618
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
Bme1390I	CCNGG	2 cut(s)	416, 439
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	3 cut(s)	212, 373, 516
BmrFI	CCNGG	2 cut(s)	416, 439
Bpu10I	CCTNAGC	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	439
BsaBI	GATNNNNATC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 409, 421, 511
Bse8I	GATNNNNATC	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	2 cut(s)	424, 432
BseJI	GATNNNNATC	1 cut(s)	191
BseLI	CCNNNNNNNGG	4 cut(s)	41, 409, 421, 511
BseMII	CTCAG	1 cut(s)	14
BseSI	GKGCMC	2 cut(s)	213, 502
BseXI	GCAGC	1 cut(s)	139
BseYI	CCCAGC	1 cut(s)	225
BsgI	GTGCAG	1 cut(s)	603
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	392
BshNI	GGYRCC	2 cut(s)	210, 514
BsiEI	CGRYCG	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	502
BsiSI	CCGG	1 cut(s)	438
BslI	CCNNNNNNNGG	4 cut(s)	41, 409, 421, 511
BsmI	GAATGC	2 cut(s)	266, 478
BsnI	GGCC	1 cut(s)	392
Bsp1286I	GDGCHC	2 cut(s)	213, 502
Bsp143I	GATC	3 cut(s)	104, 491, 568
Bsp19I	CCATGG	1 cut(s)	35
BspACI	CCGC	1 cut(s)	229
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	1 cut(s)	15
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	3 cut(s)	212, 373, 516
BspMI	ACCTGC	1 cut(s)	618
BspPI	GGATC	1 cut(s)	576
BspT107I	GGYRCC	2 cut(s)	210, 514
BspTI	CTTAAG	2 cut(s)	365, 602
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	3 cut(s)	104, 491, 568
BssT1I	CCWWGG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	1 cut(s)	536
BstAFI	CTTAAG	2 cut(s)	365, 602
BstDEI	CTNAG	3 cut(s)	23, 381, 458
BstDSI	CCRYGG	1 cut(s)	35
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstF5I	GGATG	2 cut(s)	424, 432
BstKTI	GATC	3 cut(s)	107, 494, 571
BstMBI	GATC	3 cut(s)	104, 491, 568
BstMCI	CGRYCG	1 cut(s)	107
BstNI	CCWGG	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	414, 437
BstSLI	GKGCMC	2 cut(s)	213, 502
BstV1I	GCAGC	1 cut(s)	139
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
BsuRI	GGCC	1 cut(s)	392
BtgI	CCRYGG	1 cut(s)	35
BtsCI	GGATG	2 cut(s)	424, 432
BtsIMutI	CAGTG	1 cut(s)	67
BveI	ACCTGC	1 cut(s)	618
CciI	TCATGA	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	412
CviAII	CATG	4 cut(s)	36, 121, 262, 349
CviJI	RGCY	6 cut(s)	76, 205, 302, 385, 392, 402
CviKI_1	RGCY	6 cut(s)	76, 205, 302, 385, 392, 402
DdeI	CTNAG	3 cut(s)	23, 381, 458
DpnI	GATC	3 cut(s)	106, 493, 570
DpnII	GATC	3 cut(s)	104, 491, 568
EaeI	YGGCCR	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	412
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	4 cut(s)	39, 124, 265, 352
FatI	CATG	4 cut(s)	35, 120, 261, 348
FauNDI	CATATG	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	2 cut(s)	431, 439
Fsp4HI	GCNGC	1 cut(s)	128
FspBI	CTAG	5 cut(s)	206, 404, 447, 563, 591
GluI	GCNGC	1 cut(s)	128
GsaI	CCCAGC	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	1 cut(s)	438
Hin1II	CATG	4 cut(s)	39, 124, 265, 352
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	7 cut(s)	97, 137, 220, 361, 479, 485, 553
HpaII	CCGG	1 cut(s)	438
HphI	GGTGA	1 cut(s)	608
Hpy166II	GTNNAC	3 cut(s)	243, 500, 599
Hpy188I	TCNGA	3 cut(s)	19, 219, 484
Hpy188III	TCNNGA	4 cut(s)	121, 469, 489, 591
Hpy8I	GTNNAC	3 cut(s)	243, 500, 599
HpyAV	CCTTC	2 cut(s)	83, 403
HpyCH4III	ACNGT	1 cut(s)	536
HpyCH4V	TGCA	5 cut(s)	143, 296, 476, 500, 584
HpyF3I	CTNAG	3 cut(s)	23, 381, 458
Hsp92II	CATG	4 cut(s)	39, 124, 265, 352
Kzo9I	GATC	3 cut(s)	104, 491, 568
LpnPI	CCDG	7 cut(s)	239, 357, 401, 428, 451, 497, 623
Lsp1109I	GCAGC	1 cut(s)	139
MaeI	CTAG	5 cut(s)	206, 404, 447, 563, 591
MaeIII	GTNAC	2 cut(s)	433, 530
MalI	GATC	3 cut(s)	106, 493, 570
MboI	GATC	3 cut(s)	104, 491, 568
MboII	GAAGA	1 cut(s)	92
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	2 cut(s)	213, 502
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	4 cut(s)	154, 506, 548, 577
MluNI	TGGCCA	1 cut(s)	392
MlyI	GAGTC	2 cut(s)	146, 488
MmeI	TCCRAC	2 cut(s)	162, 462
MnlI	CCTC	3 cut(s)	317, 559, 587
Mox20I	TGGCCA	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	392
MseI	TTAA	4 cut(s)	336, 366, 576, 603
Msp20I	TGGCCA	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	229
MspCI	CTTAAG	2 cut(s)	365, 602
MspI	CCGG	1 cut(s)	438
MspR9I	CCNGG	2 cut(s)	416, 439
Mva1269I	GAATGC	2 cut(s)	266, 478
MvaI	CCWGG	1 cut(s)	416
NciI	CCSGG	1 cut(s)	439
NcoI	CCATGG	1 cut(s)	35
NdeI	CATATG	1 cut(s)	132
NdeII	GATC	3 cut(s)	104, 491, 568
NlaIII	CATG	4 cut(s)	39, 124, 265, 352
NlaIV	GGNNCC	3 cut(s)	212, 373, 516
PagI	TCATGA	1 cut(s)	120
PctI	GAATGC	2 cut(s)	266, 478
PfeI	GAWTC	5 cut(s)	97, 220, 361, 485, 553
PflMI	CCANNNNNTGG	1 cut(s)	421
PkrI	GCNGC	1 cut(s)	129
Ple19I	CGATCG	1 cut(s)	107
PleI	GAGTC	2 cut(s)	145, 487
PpsI	GAGTC	2 cut(s)	145, 487
Psp6I	CCWGG	1 cut(s)	414
PspFI	CCCAGC	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	3 cut(s)	212, 373, 516
PspPI	GGNCC	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	568
PvuI	CGATCG	1 cut(s)	107
SaqAI	TTAA	4 cut(s)	336, 366, 576, 603
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	3 cut(s)	104, 491, 568
Sau96I	GGNCC	1 cut(s)	412
SchI	GAGTC	2 cut(s)	146, 488
ScrFI	CCNGG	2 cut(s)	416, 439
SduI	GDGCHC	2 cut(s)	213, 502
SetI	ASST	8 cut(s)	51, 78, 207, 464, 520, 547, 598, 612
SinI	GGWCC	1 cut(s)	412
SmlI	CTYRAG	2 cut(s)	365, 602
SmoI	CTYRAG	2 cut(s)	365, 602
Sse9I	AATT	4 cut(s)	154, 506, 548, 577
SsiI	CCGC	1 cut(s)	229
SspMI	CTAG	5 cut(s)	206, 404, 447, 563, 591
StyD4I	CCNGG	2 cut(s)	414, 437
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	536
TaqI	TCGA	2 cut(s)	103, 107
TasI	AATT	4 cut(s)	154, 506, 548, 577
TfiI	GAWTC	5 cut(s)	97, 220, 361, 485, 553
Tru1I	TTAA	4 cut(s)	336, 366, 576, 603
Tru9I	TTAA	4 cut(s)	336, 366, 576, 603
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	68, 109, 137
TspRI	CASTG	1 cut(s)	67
Van91I	CCANNNNNTGG	1 cut(s)	421
Vha464I	CTTAAG	2 cut(s)	365, 602
VneI	GTGCAC	1 cut(s)	498
VpaK11BI	GGWCC	1 cut(s)	412
XagI	CCTNNNNNAGG	1 cut(s)	407
XapI	RAATTY	1 cut(s)	154
XbaI	TCTAGA	1 cut(s)	590
XspI	CTAG	5 cut(s)	206, 404, 447, 563, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.