Rh6AG066400

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001292
Physical Location & Seq
Forward (+)
9715974 .. 9716828
855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG066400.1

Sequence Viewer

Length: 855 bp
ATGGTCGGCATGTTTGGGAATTTAAGCATTGGCGACTGTTCTAAAAAGCTCCCTCACCAAATAGTGGTTTCCTTATTTAAGAAGGAAAAGGTAAAGGGACGTGGACCACGTGGTGATGAAGCTGCAGAGCTCGAGTGGAAGGGACTACTGCAAGAGTTAACAAACCAAGGCAAGCTCAGGAATTGTGTTACCGTCTGTGACATGAGGTCGAGCATGACAGGGACATTCAAGGAGGCGGCTTGTATCTCAATGGGATTATTGATTTCGGAGTTGAGTGAAAATCCATGGAAAGGAAAGATCTTCTCCTTCAACGAATTTCCCAAGCTGAATAAGGTTGAAGGAGACGATCTTCAATCCAAATGCGAGTTCATGAGGCAGATGGAATGCACGGAGAAAGTTAACTTCGGCGCTATTTACAATCGGATTTTGCAGATTGCACTCACAGAGAAGCTAAGTAAGGAGCAAATGCCTAAAAGGATTTTCGTCTTCACCTATAGTGATTTTGTCGCGGCCTCCAAAAACAACTGGGATGAAGAATACAGGGAAGCATGGGCTAGTTACAGAAAGAGAGGGTTTTCAACTGTGCCGCAAATGGTGTTTTGGAATCTTAGGGACCCGGTTGGGGAGCCGGAGGTATTTGGCAGCCCGGTGAAGAACCAAAATGGGGGGATGATCATGACTGGTTTTTCAAACCTTCTGCTCAAACTGTACTTCAGAGGAGAGACGGATTCGAGAACGAATGCTGGTCGGAGCCATTCTTTTTATCGTGGTGTTAATGTACTTTCCGTGATGAAATATGTTCCTAATGTAGAGGATGTGATGAACTGTGCAATTTCAAGTATTGTATTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

284

Amino Acids

32.23

Weight (kDa)

8.74

Isoelectric Point (pI)

30.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7788 PF25043 61 - 243 5.9e-44 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 64
AccII CGCG 1 cut(s) 509
AciI CCGC 3 cut(s) 236, 509, 587
AcsI RAATTY 2 cut(s) 19, 314
AcuI CTGAAG 1 cut(s) 697
AcvI CACGTG 1 cut(s) 110
AdeI CACNNNGTG 1 cut(s) 113
AfaI GTAC 2 cut(s) 710, 780
AfiI CCNNNNNNNGG 4 cut(s) 64, 290, 622, 664
AgsI TTSAA 7 cut(s) 229, 310, 338, 353, 579, 690, 837
AhdI GACNNNNNGTC 1 cut(s) 205
AjiI CACGTC 1 cut(s) 101
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
AluBI AGCT 6 cut(s) 49, 122, 130, 175, 325, 451
AluI AGCT 6 cut(s) 49, 122, 130, 175, 325, 451
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 2 cut(s) 336, 716
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 1 cut(s) 510
ApeKI GCWGC 2 cut(s) 122, 642
ApoI RAATTY 2 cut(s) 19, 314
AspLEI GCGC 1 cut(s) 410
AspS9I GGNCC 2 cut(s) 104, 613
AsuC2I CCSGG 2 cut(s) 617, 647
AsuHPI GGTGA 4 cut(s) 47, 125, 481, 661
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 2 cut(s) 104, 613
BanII GRGCYC 1 cut(s) 132
BbrPI CACGTG 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 478
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 2 cut(s) 109, 654
BccI CCATC 1 cut(s) 373
BclI TGATCA 1 cut(s) 672
BcnI CCSGG 2 cut(s) 617, 647
BcoDI GTCTC 2 cut(s) 336, 716
BfaI CTAG 1 cut(s) 555
BfmI CTRYAG 2 cut(s) 123, 493
BfoI RGCGCY 1 cut(s) 411
BglII AGATCT 1 cut(s) 297
BisI GCNGC 5 cut(s) 123, 237, 510, 587, 643
BlsI GCNGC 5 cut(s) 124, 238, 511, 588, 644
Bme1390I CCNGG 2 cut(s) 617, 647
Bme18I GGWCC 2 cut(s) 104, 613
BmeRI GACNNNNNGTC 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 131
BmgBI CACGTC 1 cut(s) 101
BmgT120I GGNCC 2 cut(s) 104, 613
BmiI GGNNCC 4 cut(s) 614, 615, 627, 752
BmrFI CCNGG 2 cut(s) 617, 647
BmrI ACTGGG 1 cut(s) 535
BmuI ACTGGG 1 cut(s) 535
BpiI GAAGAC 1 cut(s) 478
Bpu10I CCTNAGC 1 cut(s) 176
BpuMI CCSGG 2 cut(s) 617, 647
BsaAI YACGTR 1 cut(s) 110
BsaJI CCNNGG 2 cut(s) 166, 284
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 290, 622, 664
Bse1I ACTGG 2 cut(s) 530, 685
BseDI CCNNGG 2 cut(s) 166, 284
BseGI GGATG 3 cut(s) 535, 675, 820
BseLI CCNNNNNNNGG 4 cut(s) 64, 290, 622, 664
BseMII CTCAG 1 cut(s) 190
BseNI ACTGG 2 cut(s) 530, 685
BseRI GAGGAG 1 cut(s) 732
BseXI GCAGC 2 cut(s) 109, 654
Bsh1236I CGCG 1 cut(s) 509
BshFI GGCC 1 cut(s) 512
BsiHKAI GWGCWC 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 3 cut(s) 617, 629, 647
BslFI GGGAC 4 cut(s) 111, 156, 235, 626
BslI CCNNNNNNNGG 4 cut(s) 64, 290, 622, 664
BsmAI GTCTC 2 cut(s) 336, 716
BsmBI CGTCTC 2 cut(s) 336, 716
BsmFI GGGAC 4 cut(s) 111, 156, 235, 626
BsmI GAATGC 2 cut(s) 389, 745
BsnI GGCC 1 cut(s) 512
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 3 cut(s) 297, 346, 672
Bsp19I CCATGG 1 cut(s) 284
BspACI CCGC 3 cut(s) 236, 509, 587
BspANI GGCC 1 cut(s) 512
BspCNI CTCAG 1 cut(s) 189
BspFNI CGCG 1 cut(s) 509
BspHI TCATGA 2 cut(s) 369, 675
BspLI GGNNCC 4 cut(s) 614, 615, 627, 752
BspMAI CTGCAG 1 cut(s) 127
BsrI ACTGG 2 cut(s) 530, 685
BssECI CCNNGG 2 cut(s) 166, 284
BssMI GATC 3 cut(s) 297, 346, 672
BssT1I CCWWGG 2 cut(s) 166, 284
Bst4CI ACNGT 5 cut(s) 38, 193, 583, 708, 827
BstBAI YACGTR 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 3 cut(s) 176, 452, 608
BstDSI CCRYGG 1 cut(s) 284
BstF5I GGATG 3 cut(s) 535, 675, 820
BstFNI CGCG 1 cut(s) 509
BstH2I RGCGCY 1 cut(s) 411
BstHHI GCGC 1 cut(s) 410
BstKTI GATC 3 cut(s) 300, 349, 675
BstMAI GTCTC 2 cut(s) 336, 716
BstMBI GATC 3 cut(s) 297, 346, 672
BstNSI RCATGY 1 cut(s) 13
BstSCI CCNGG 2 cut(s) 615, 645
BstSFI CTRYAG 2 cut(s) 123, 493
BstUI CGCG 1 cut(s) 509
BstV1I GCAGC 2 cut(s) 109, 654
BstV2I GAAGAC 1 cut(s) 478
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
BsuRI GGCC 1 cut(s) 512
BtgI CCRYGG 1 cut(s) 284
BtrI CACGTC 1 cut(s) 101
BtsCI GGATG 3 cut(s) 535, 675, 820
Cac8I GCNNGC 1 cut(s) 173
CciI TCATGA 2 cut(s) 369, 675
CfoI GCGC 1 cut(s) 410
Cfr13I GGNCC 2 cut(s) 104, 613
Csp6I GTAC 2 cut(s) 709, 779
CviAII CATG 7 cut(s) 10, 202, 214, 285, 370, 549, 676
CviQI GTAC 2 cut(s) 709, 779
DdeI CTNAG 3 cut(s) 176, 452, 608
DpnI GATC 3 cut(s) 299, 348, 674
DpnII GATC 3 cut(s) 297, 346, 672
DraIII CACNNNGTG 1 cut(s) 113
DriI GACNNNNNGTC 1 cut(s) 205
Eam1105I GACNNNNNGTC 1 cut(s) 205
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 166, 284
Eco24I GRGCYC 1 cut(s) 132
Eco47I GGWCC 2 cut(s) 104, 613
Eco53kI GAGCTC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 697
Eco72I CACGTG 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 613
EcoT14I CCWWGG 2 cut(s) 166, 284
EcoT38I GRGCYC 1 cut(s) 132
ErhI CCWWGG 2 cut(s) 166, 284
Esp3I CGTCTC 2 cut(s) 336, 716
FaeI CATG 7 cut(s) 13, 205, 217, 288, 373, 552, 679
FaiI YATR 9 cut(s) 11, 203, 215, 286, 371, 495, 550, 677, 798
FaqI GGGAC 4 cut(s) 111, 156, 235, 626
FatI CATG 7 cut(s) 9, 201, 213, 284, 369, 548, 675
FbaI TGATCA 1 cut(s) 672
Fnu4HI GCNGC 5 cut(s) 123, 237, 510, 587, 643
FokI GGATG 3 cut(s) 542, 682, 827
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 5 cut(s) 123, 237, 510, 587, 643
FspBI CTAG 1 cut(s) 555
GlaI GCGC 1 cut(s) 409
GluI GCNGC 5 cut(s) 123, 237, 510, 587, 643
HaeII RGCGCY 1 cut(s) 411
HaeIII GGCC 1 cut(s) 512
HapII CCGG 3 cut(s) 617, 629, 647
HhaI GCGC 1 cut(s) 410
Hin1II CATG 7 cut(s) 13, 205, 217, 288, 373, 552, 679
Hin6I GCGC 1 cut(s) 408
HinP1I GCGC 1 cut(s) 408
HincII GTYRAC 2 cut(s) 159, 400
HindII GTYRAC 2 cut(s) 159, 400
HinfI GANTC 2 cut(s) 604, 728
HpaI GTTAAC 2 cut(s) 159, 400
HpaII CCGG 3 cut(s) 617, 629, 647
HphI GGTGA 4 cut(s) 47, 125, 481, 661
Hpy166II GTNNAC 3 cut(s) 104, 159, 400
Hpy188I TCNGA 4 cut(s) 268, 423, 716, 750
Hpy188III TCNNGA 4 cut(s) 178, 370, 676, 732
Hpy8I GTNNAC 3 cut(s) 104, 159, 400
HpyAV CCTTC 5 cut(s) 76, 133, 316, 332, 704
HpyCH4III ACNGT 5 cut(s) 38, 193, 583, 708, 827
HpyCH4IV ACGT 2 cut(s) 100, 109
HpyCH4V TGCA 6 cut(s) 125, 151, 387, 430, 437, 830
HpyF3I CTNAG 3 cut(s) 176, 452, 608
HpySE526I ACGT 2 cut(s) 100, 109
Hsp92II CATG 7 cut(s) 13, 205, 217, 288, 373, 552, 679
HspAI GCGC 1 cut(s) 408
KflI GGGWCCC 1 cut(s) 613
Ksp22I TGATCA 1 cut(s) 672
KspAI GTTAAC 2 cut(s) 159, 400
Kzo9I GATC 3 cut(s) 297, 346, 672
LmnI GCTCC 4 cut(s) 54, 460, 625, 750
LpnPI CCDG 9 cut(s) 163, 204, 511, 526, 630, 642, 660, 666, 729
Lsp1109I GCAGC 2 cut(s) 109, 654
MaeI CTAG 1 cut(s) 555
MaeII ACGT 2 cut(s) 100, 109
MaeIII GTNAC 3 cut(s) 187, 197, 557
MalI GATC 3 cut(s) 299, 348, 674
MboI GATC 3 cut(s) 297, 346, 672
MboII GAAGA 5 cut(s) 292, 341, 478, 545, 664
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 4 cut(s) 19, 181, 314, 831
MmeI TCCRAC 1 cut(s) 728
MnlI CCTC 9 cut(s) 63, 198, 226, 366, 523, 563, 625, 710, 805
MseI TTAA 5 cut(s) 23, 78, 158, 399, 774
MspI CCGG 3 cut(s) 617, 629, 647
MspR9I CCNGG 2 cut(s) 617, 647
Mva1269I GAATGC 2 cut(s) 389, 745
MvnI CGCG 1 cut(s) 509
NciI CCSGG 2 cut(s) 617, 647
NcoI CCATGG 1 cut(s) 284
NdeII GATC 3 cut(s) 297, 346, 672
NlaIII CATG 7 cut(s) 13, 205, 217, 288, 373, 552, 679
NlaIV GGNNCC 4 cut(s) 614, 615, 627, 752
NmuCI GTSAC 1 cut(s) 197
NspI RCATGY 1 cut(s) 13
PaeR7I CTCGAG 1 cut(s) 131
PagI TCATGA 2 cut(s) 369, 675
PcsI WCGNNNNNNNCGW 1 cut(s) 106
PctI GAATGC 2 cut(s) 389, 745
PfeI GAWTC 2 cut(s) 604, 728
PflMI CCANNNNNTGG 1 cut(s) 64
PkrI GCNGC 5 cut(s) 124, 238, 511, 588, 644
PmaCI CACGTG 1 cut(s) 110
PmlI CACGTG 1 cut(s) 110
Ppu21I YACGTR 1 cut(s) 110
PpuMI RGGWCCY 1 cut(s) 613
Psp124BI GAGCTC 1 cut(s) 132
Psp5II RGGWCCY 1 cut(s) 613
PspCI CACGTG 1 cut(s) 110
PspN4I GGNNCC 4 cut(s) 614, 615, 627, 752
PspPI GGNCC 2 cut(s) 104, 613
PspPPI RGGWCCY 1 cut(s) 613
PspXI VCTCGAGB 1 cut(s) 131
PstI CTGCAG 1 cut(s) 127
PsuI RGATCY 1 cut(s) 297
RsaI GTAC 2 cut(s) 710, 780
RsaNI GTAC 2 cut(s) 709, 779
SacI GAGCTC 1 cut(s) 132
SaqAI TTAA 5 cut(s) 23, 78, 158, 399, 774
SatI GCNGC 5 cut(s) 123, 237, 510, 587, 643
Sau3AI GATC 3 cut(s) 297, 346, 672
Sau96I GGNCC 2 cut(s) 104, 613
ScrFI CCNGG 2 cut(s) 617, 647
SduI GDGCHC 1 cut(s) 132
SfcI CTRYAG 2 cut(s) 123, 493
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 2 cut(s) 104, 613
SlaI CTCGAG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 4 cut(s) 19, 181, 314, 831
SsiI CCGC 3 cut(s) 236, 509, 587
SspMI CTAG 1 cut(s) 555
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 2 cut(s) 615, 645
StyI CCWWGG 2 cut(s) 166, 284
TaaI ACNGT 5 cut(s) 38, 193, 583, 708, 827
TaiI ACGT 2 cut(s) 103, 112
TaqI TCGA 3 cut(s) 132, 209, 731
TasI AATT 4 cut(s) 19, 181, 314, 831
TatI WGTACW 2 cut(s) 708, 778
TauI GCSGC 3 cut(s) 239, 512, 589
TfiI GAWTC 2 cut(s) 604, 728
Tru1I TTAA 5 cut(s) 23, 78, 158, 399, 774
Tru9I TTAA 5 cut(s) 23, 78, 158, 399, 774
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 2 cut(s) 122, 642
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 5 cut(s) 132, 358, 546, 806, 836
TspGWI ACGGA 3 cut(s) 404, 740, 775
Van91I CCANNNNNTGG 1 cut(s) 64
VpaK11BI GGWCC 2 cut(s) 104, 613
XapI RAATTY 2 cut(s) 19, 314
XceI RCATGY 1 cut(s) 13
XhoI CTCGAG 1 cut(s) 131
XspI CTAG 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.