Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001292

Physical Location & Seq

Genomic Coordinates Reverse (-)

12657890 .. 12659343

Gene Structure 1454 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGTGGGGAAACCCAACAAAGAAGCCTTTTACAAGTCCTTCTTGTGGGTCCACAAAAACCACCCTCTAGCCCTAGCACTAAATCTCAACGTTTTTGGGGATTTGGGTTGGTTCAAAGATTTGTTGGAGATTCTCTCTAGGGTTTTGCAGGACTTCATAGTAAAGAAACGGGAGGAGAAACGTATGAAAAGTTGTTGGAACATGAGTTATTGGTCCTTTTGTGACGAAAGCTATGAGGAGGAAGAGAAGGAGGAGATCAATACAATCATAGATGTTCAAATTGCCAGGGCTAAAGCGGCTGTTGATAGGTACCGAGATGACCCGGAGTATAGGTTCTTGCACGATGGTGTATCTGATGTGTTTGTTGAAATGTTGGCATCAGATTTAAGGTCTTTGAAGTCTGATGAGATTGAAAAAATCAGCCATGCCTCCAAATTTTGCCCTTCAATTGATTCGTCTTACGACAGAGCAACTCTAATATGTGAAAACATAGCGAAGAGAATGTTTCCACGGGATGATTATGAAGAGTACATAGATCTTGAAGAAGCGCATTACGCTTACAGGGTTCGCGATTGGTTAAGGAAACAAACACTTATCCCCCTGCGCAAGGCATTGTCATTGAACTGCTCACTGGCTGCGAAACAGAACAAGAAGTCATTGTCATTGTTCAAAAACCGCAAGGCGCTGGTTGCTTTAGAAGACTACAGAAATATCGCTGGTTGTCATGATGGTGGAGGCAACAATGAAAGCAAATTGAAATTCAAGAGTCGCATGAATATTGTGCAAAAGGTTGTACCAAAGAAAGCAATTATCAATATGTGTTTTGGTGATGAGGTAAAGCTTCCTCACCACGTGCTGGCCTCATTGGAGAAGGAACAAGGTGGGGTTACTGAAAATCCAGAGGTTCAGTGGCAGAGATTGGTCAAAGAGTTGGCTAGCAAAGGGAAACTCAGAAATTGTGTTGCAGTCAAAGCTCCAATGCTGAACAGGATCGAAGGAGAGGATCTTCAATCCAAATGCGAGTTTATGAGAAGCTTAGAGTTCGTCGAGAAAGTTGATTTCCTCAAGATTCCTAAAAGGATTTTCGTGCTCACATACAAAGATTTCGCGAACGCCATGAATAACAATTGGGTGGAGGATTACAAAAAGGCTTGGGCTAATTACAAAAATAGTGGGTATTGGAGTGTACCAGAGTTGGTGTTTTGGAATTTGAACGGCTCAATTGCCGAGCCAAAGGTGTTCGGTACCCCTGTGAATAATCACAAAGGGGGGATGATTATTACCGGGTTTTCCGACATCCTGCTCAGCCTTTTCTTCAAAGGTGAGTCGGATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

446

Amino Acids

51.52

Weight (kDa)

8.37

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2828	PF11443	3 - 317	3.8e-51	Domain of unknown function (DUF2828)
DUF7788	PF25043	359 - 442	4.4e-13	Domain of unknown function (DUF7788)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001292)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04500 FvH4_2g04520 FvH4_2g04540 FvH4_2g04550
malus_domestica	MD05G1095800.v1.1 MD05G1215400.v1.1
prunus_persica	Prupe.8G139800_v2.0.a1 Prupe.8G139900_v2.0.a1 Prupe.8G140000_v2.0.a1 Prupe.8G140100_v2.0.a1 Prupe.8G140200_v2.0.a1
pyrus_communis	pycom05g09450
rosa_chinensis	RchiOBHm_Chr6g0254021 RchiOBHm_Chr6g0254031 RchiOBHm_Chr6g0254051 RchiOBHm_Chr6g0254071 RchiOBHm_Chr6g0254131
rosa_laevigata	RLG00000014941 RLG00000014945 RLG00000014947 RLG00000014948 RLG00000028713
rosa_multiflora	Rmu_co8068492.1_g000001 Rmu_co8292957.1_g000001 Rmu_sc0000010.1_g000029 Rmu_sc0001716.1_g000022 Rmu_sc0001716.1_g000026 Rmu_sc0001716.1_g000030
rosa_roxburghii	Rroxscaffold_7G00211140 Rroxscaffold_7G00211260 Rroxscaffold_7G00211290 Rroxscaffold_7G00211300
rosa_rugosa	Rorug05G0549000
rosa_samantha	Rh6AG065500 Rh6AG065600 Rh6AG065800 Rh6AG066400 Rh6BG058400 Rh6BG058600 Rh6BG059500 Rh6CG058500 Rh6CG058600 Rh6CG058700 Rh6CG058800 Rh6CG059100 Rh6CG059200 Rh6DG055300 Rh6DG055400 Rh6DG055500 Rh6DG055600 Rh6DG056000 Rh6DG056100
rosa_wichuraiana	Rw6G005770 Rw6G005790 Rw6G005830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	605
Acc65I	GGTACC	2 cut(s)	309, 1244
AccB1I	GGYRCC	2 cut(s)	309, 1244
AccB7I	CCANNNNNTGG	1 cut(s)	856
AccII	CGCG	2 cut(s)	570, 1109
AciI	CCGC	2 cut(s)	296, 676
AclI	AACGTT	1 cut(s)	90
AclWI	GGATC	2 cut(s)	998, 1011
AcsI	RAATTY	3 cut(s)	434, 758, 1207
AcvI	CACGTG	1 cut(s)	853
AdeI	CACNNNGTG	1 cut(s)	853
AfaI	GTAC	5 cut(s)	311, 530, 795, 1188, 1246
AfiI	CCNNNNNNNGG	3 cut(s)	45, 607, 856
AjnI	CCWGG	1 cut(s)	284
AleI	CACNNNNGTG	1 cut(s)	345
AloI	GAACNNNNNNTCC	2 cut(s)	317, 349
AluBI	AGCT	4 cut(s)	231, 841, 974, 1035
AluI	AGCT	4 cut(s)	231, 841, 974, 1035
Alw21I	GWGCWC	1 cut(s)	1092
AlwI	GGATC	2 cut(s)	998, 1011
AoxI	GGCC	1 cut(s)	858
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	3 cut(s)	434, 758, 1207
Asp718I	GGTACC	2 cut(s)	309, 1244
AspLEI	GCGC	3 cut(s)	550, 606, 685
AspS9I	GGNCC	2 cut(s)	49, 213
AsuC2I	CCSGG	2 cut(s)	323, 1285
AsuHPI	GGTGA	3 cut(s)	839, 839, 1334
AsuNHI	GCTAGC	1 cut(s)	935
AvaII	GGWCC	2 cut(s)	49, 213
BaeI	ACNNNNGTAYC	2 cut(s)	1236, 1269
BanI	GGYRCC	2 cut(s)	309, 1244
BbrPI	CACGTG	1 cut(s)	853
BbsI	GAAGAC	1 cut(s)	705
Bbv12I	GWGCWC	1 cut(s)	1092
BbvI	GCAGC	1 cut(s)	622
BccI	CCATC	2 cut(s)	338, 722
BceAI	ACGGC	1 cut(s)	1231
BciT130I	CCWGG	1 cut(s)	286
BcnI	CCSGG	2 cut(s)	323, 1285
BfaI	CTAG	4 cut(s)	68, 74, 138, 936
BfmI	CTRYAG	1 cut(s)	703
BfoI	RGCGCY	1 cut(s)	686
BglII	AGATCT	1 cut(s)	535
BisI	GCNGC	2 cut(s)	297, 636
BlpI	GCTNAGC	1 cut(s)	1304
BlsI	GCNGC	2 cut(s)	298, 637
Bme1390I	CCNGG	3 cut(s)	286, 323, 1285
Bme18I	GGWCC	2 cut(s)	49, 213
BmgT120I	GGNCC	2 cut(s)	49, 213
BmiI	GGNNCC	3 cut(s)	50, 311, 1246
BmrFI	CCNGG	3 cut(s)	286, 323, 1285
BmsI	GCATC	1 cut(s)	386
BmtI	GCTAGC	1 cut(s)	939
BpiI	GAAGAC	1 cut(s)	705
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
Bpu1102I	GCTNAGC	1 cut(s)	1304
BpuEI	CTTGAG	1 cut(s)	1049
BpuMI	CCSGG	2 cut(s)	323, 1285
BsaAI	YACGTR	1 cut(s)	853
BsaJI	CCNNGG	2 cut(s)	285, 509
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 607, 856
Bse1I	ACTGG	1 cut(s)	636
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	2 cut(s)	285, 509
BseGI	GGATG	3 cut(s)	520, 1278, 1296
BseLI	CCNNNNNNNGG	3 cut(s)	45, 607, 856
BseMII	CTCAG	2 cut(s)	964, 1318
BseNI	ACTGG	1 cut(s)	636
BseRI	GAGGAG	3 cut(s)	188, 251, 266
BseXI	GCAGC	1 cut(s)	622
Bsh1236I	CGCG	2 cut(s)	570, 1109
BshFI	GGCC	1 cut(s)	860
BshNI	GGYRCC	2 cut(s)	309, 1244
BsiHKAI	GWGCWC	1 cut(s)	1092
BsiSI	CCGG	2 cut(s)	323, 1284
BslI	CCNNNNNNNGG	3 cut(s)	45, 607, 856
BsnI	GGCC	1 cut(s)	860
Bsp1286I	GDGCHC	1 cut(s)	1092
Bsp143I	GATC	4 cut(s)	255, 535, 990, 1003
Bsp1720I	GCTNAGC	1 cut(s)	1304
Bsp68I	TCGCGA	2 cut(s)	570, 1109
BspACI	CCGC	2 cut(s)	296, 676
BspANI	GGCC	1 cut(s)	860
BspCNI	CTCAG	2 cut(s)	963, 1317
BspFNI	CGCG	2 cut(s)	570, 1109
BspHI	TCATGA	1 cut(s)	724
BspLI	GGNNCC	3 cut(s)	50, 311, 1246
BspOI	GCTAGC	1 cut(s)	939
BspPI	GGATC	2 cut(s)	998, 1011
BspT107I	GGYRCC	2 cut(s)	309, 1244
BsrI	ACTGG	1 cut(s)	636
BssECI	CCNNGG	2 cut(s)	285, 509
BssMI	GATC	4 cut(s)	255, 535, 990, 1003
Bst2UI	CCWGG	1 cut(s)	286
Bst6I	CTCTTC	3 cut(s)	237, 491, 519
BstBAI	YACGTR	1 cut(s)	853
BstC8I	GCNNGC	2 cut(s)	858, 937
BstDEI	CTNAG	3 cut(s)	950, 1036, 1304
BstDSI	CCRYGG	1 cut(s)	509
BstENI	CCTNNNNNAGG	1 cut(s)	605
BstF5I	GGATG	3 cut(s)	520, 1278, 1296
BstFNI	CGCG	2 cut(s)	570, 1109
BstH2I	RGCGCY	1 cut(s)	686
BstHHI	GCGC	3 cut(s)	550, 606, 685
BstKTI	GATC	4 cut(s)	258, 538, 993, 1006
BstMBI	GATC	4 cut(s)	255, 535, 990, 1003
BstMWI	GCNNNNNNNGC	4 cut(s)	296, 554, 689, 971
BstNI	CCWGG	1 cut(s)	286
BstSCI	CCNGG	3 cut(s)	284, 321, 1283
BstSFI	CTRYAG	1 cut(s)	703
BstUI	CGCG	2 cut(s)	570, 1109
BstV1I	GCAGC	1 cut(s)	622
BstV2I	GAAGAC	1 cut(s)	705
BstX2I	RGATCY	2 cut(s)	535, 1003
BstYI	RGATCY	2 cut(s)	535, 1003
BsuRI	GGCC	1 cut(s)	860
BtgI	CCRYGG	1 cut(s)	509
BtsCI	GGATG	3 cut(s)	520, 1278, 1296
BtsIMutI	CAGTG	2 cut(s)	629, 914
BtuMI	TCGCGA	2 cut(s)	570, 1109
Cac8I	GCNNGC	2 cut(s)	858, 937
CciI	TCATGA	1 cut(s)	724
CfoI	GCGC	3 cut(s)	550, 606, 685
Cfr13I	GGNCC	2 cut(s)	49, 213
Csp6I	GTAC	5 cut(s)	310, 529, 794, 1187, 1245
CspCI	CAANNNNNGTGG	2 cut(s)	1153, 1188
CviAII	CATG	5 cut(s)	202, 425, 725, 772, 1117
CviQI	GTAC	5 cut(s)	310, 529, 794, 1187, 1245
DdeI	CTNAG	3 cut(s)	950, 1036, 1304
DpnI	GATC	4 cut(s)	257, 537, 992, 1005
DpnII	GATC	4 cut(s)	255, 535, 990, 1003
DraIII	CACNNNGTG	1 cut(s)	853
Eam1104I	CTCTTC	3 cut(s)	237, 491, 519
EarI	CTCTTC	3 cut(s)	237, 491, 519
Eco47I	GGWCC	2 cut(s)	49, 213
Eco72I	CACGTG	1 cut(s)	853
EcoNI	CCTNNNNNAGG	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	284
FaeI	CATG	5 cut(s)	205, 428, 728, 775, 1120
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FatI	CATG	5 cut(s)	201, 424, 724, 771, 1116
Fnu4HI	GCNGC	2 cut(s)	297, 636
FokI	GGATG	3 cut(s)	527, 1283, 1285
Fsp4HI	GCNGC	2 cut(s)	297, 636
FspBI	CTAG	4 cut(s)	68, 74, 138, 936
FspI	TGCGCA	1 cut(s)	605
GlaI	GCGC	3 cut(s)	549, 605, 684
GluI	GCNGC	2 cut(s)	297, 636
HaeII	RGCGCY	1 cut(s)	686
HaeIII	GGCC	1 cut(s)	860
HapII	CCGG	2 cut(s)	323, 1284
HhaI	GCGC	3 cut(s)	550, 606, 685
Hin1II	CATG	5 cut(s)	205, 428, 728, 775, 1120
Hin6I	GCGC	3 cut(s)	548, 604, 683
HinP1I	GCGC	3 cut(s)	548, 604, 683
HindIII	AAGCTT	2 cut(s)	839, 1033
HinfI	GANTC	6 cut(s)	130, 452, 766, 1069, 1325, 1331
HpaII	CCGG	2 cut(s)	323, 1284
HphI	GGTGA	3 cut(s)	839, 839, 1334
Hpy166II	GTNNAC	2 cut(s)	52, 1187
Hpy188I	TCNGA	6 cut(s)	355, 382, 403, 953, 1294, 1330
Hpy188III	TCNNGA	9 cut(s)	539, 569, 725, 763, 899, 1048, 1066, 1108, 1335
Hpy8I	GTNNAC	2 cut(s)	52, 1187
Hpy99I	CGWCG	1 cut(s)	1049
HpyAV	CCTTC	5 cut(s)	49, 241, 453, 865, 989
HpyCH4IV	ACGT	3 cut(s)	90, 181, 852
HpyCH4V	TGCA	4 cut(s)	148, 340, 784, 965
HpyF10VI	GCNNNNNNNGC	4 cut(s)	296, 554, 689, 971
HpyF3I	CTNAG	3 cut(s)	950, 1036, 1304
HpySE526I	ACGT	3 cut(s)	90, 181, 852
Hsp92II	CATG	5 cut(s)	205, 428, 728, 775, 1120
HspAI	GCGC	3 cut(s)	548, 604, 683
KpnI	GGTACC	2 cut(s)	313, 1248
Kzo9I	GATC	4 cut(s)	255, 535, 990, 1003
LmnI	GCTCC	1 cut(s)	979
Lsp1109I	GCAGC	1 cut(s)	622
LweI	GCATC	1 cut(s)	386
MaeI	CTAG	4 cut(s)	68, 74, 138, 936
MaeII	ACGT	3 cut(s)	90, 181, 852
MaeIII	GTNAC	2 cut(s)	221, 886
MalI	GATC	4 cut(s)	257, 537, 992, 1005
MboI	GATC	4 cut(s)	255, 535, 990, 1003
MboII	GAAGA	7 cut(s)	254, 508, 536, 554, 710, 998, 1306
MfeI	CAATTG	3 cut(s)	447, 1126, 1221
MflI	RGATCY	2 cut(s)	535, 1003
MhlI	GDGCHC	1 cut(s)	1092
MlyI	GAGTC	2 cut(s)	775, 1334
MmeI	TCCRAC	4 cut(s)	105, 176, 1308, 1317
MseI	TTAA	2 cut(s)	386, 578
MslI	CAYNNNNRTG	2 cut(s)	345, 729
MspI	CCGG	2 cut(s)	323, 1284
MspR9I	CCNGG	3 cut(s)	286, 323, 1285
MunI	CAATTG	3 cut(s)	447, 1126, 1221
MvaI	CCWGG	1 cut(s)	286
MvnI	CGCG	2 cut(s)	570, 1109
MwoI	GCNNNNNNNGC	4 cut(s)	296, 554, 689, 971
NciI	CCSGG	2 cut(s)	323, 1285
NdeII	GATC	4 cut(s)	255, 535, 990, 1003
NheI	GCTAGC	1 cut(s)	935
NlaIII	CATG	5 cut(s)	205, 428, 728, 775, 1120
NlaIV	GGNNCC	3 cut(s)	50, 311, 1246
NmeAIII	GCCGAG	1 cut(s)	1252
NmuCI	GTSAC	1 cut(s)	221
NruI	TCGCGA	2 cut(s)	570, 1109
NsbI	TGCGCA	1 cut(s)	605
OliI	CACNNNNGTG	1 cut(s)	345
PagI	TCATGA	1 cut(s)	724
PfeI	GAWTC	4 cut(s)	130, 452, 1069, 1331
PflMI	CCANNNNNTGG	1 cut(s)	856
PkrI	GCNGC	2 cut(s)	298, 637
PleI	GAGTC	2 cut(s)	774, 1333
PmaCI	CACGTG	1 cut(s)	853
PmlI	CACGTG	1 cut(s)	853
PpsI	GAGTC	2 cut(s)	774, 1333
Ppu21I	YACGTR	1 cut(s)	853
Psp1406I	AACGTT	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	284
PspCI	CACGTG	1 cut(s)	853
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	3 cut(s)	50, 311, 1246
PspPI	GGNCC	2 cut(s)	49, 213
PsuI	RGATCY	2 cut(s)	535, 1003
RruI	TCGCGA	2 cut(s)	570, 1109
RsaI	GTAC	5 cut(s)	311, 530, 795, 1188, 1246
RsaNI	GTAC	5 cut(s)	310, 529, 794, 1187, 1245
RseI	CAYNNNNRTG	2 cut(s)	345, 729
SaqAI	TTAA	2 cut(s)	386, 578
SatI	GCNGC	2 cut(s)	297, 636
Sau3AI	GATC	4 cut(s)	255, 535, 990, 1003
Sau96I	GGNCC	2 cut(s)	49, 213
SchI	GAGTC	2 cut(s)	775, 1334
ScrFI	CCNGG	3 cut(s)	286, 323, 1285
SduI	GDGCHC	1 cut(s)	1092
SfaNI	GCATC	1 cut(s)	386
SfcI	CTRYAG	1 cut(s)	703
SinI	GGWCC	2 cut(s)	49, 213
SmiMI	CAYNNNNRTG	2 cut(s)	345, 729
SmlI	CTYRAG	1 cut(s)	1064
SmoI	CTYRAG	1 cut(s)	1064
SsiI	CCGC	2 cut(s)	296, 676
SspI	AATATT	1 cut(s)	778
SspMI	CTAG	4 cut(s)	68, 74, 138, 936
StyD4I	CCNGG	3 cut(s)	284, 321, 1283
TaiI	ACGT	3 cut(s)	93, 184, 855
TaqI	TCGA	2 cut(s)	993, 1047
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	4 cut(s)	130, 452, 1069, 1331
Tru1I	TTAA	2 cut(s)	386, 578
Tru9I	TTAA	2 cut(s)	386, 578
TscAI	CASTG	2 cut(s)	636, 914
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	1 cut(s)	635
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	6 cut(s)	145, 200, 537, 759, 788, 1133
TspRI	CASTG	2 cut(s)	636, 914
Van91I	CCANNNNNTGG	1 cut(s)	856
VpaK11BI	GGWCC	2 cut(s)	49, 213
XagI	CCTNNNNNAGG	1 cut(s)	605
XapI	RAATTY	3 cut(s)	434, 758, 1207
XcmI	CCANNNNNNNNNTGG	1 cut(s)	906
XspI	CTAG	4 cut(s)	68, 74, 138, 936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.