Rw6G005790

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001292
Physical Location & Seq
Forward (+)
9253912 .. 9255531
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G005790.1

Sequence Viewer

Length: 1620 bp
ATGGGGAAGCTCAACGAAGATCGGTTTTACAAAGTCATGTTGTGGGTGCACAATAACCACCCTCTAACCATGTCTTTGAATGTCATGGCTTTTGGGGGTTTAGGTATGTTCAAGGATCTTTTGGGGGTTCTGTATAGGGTTTTGGAGGATTCCATAGAAAAACCAAATAACGAATACTCGCGGTGGAATTATGATTATTCTCGGGAAGAAGAGACATCAACAAATAAGGAAGGTATTGATAATAATTCTAGGGCTAAAACCGCCGTTGAGAGGTACCAAAACGACTCAGATTATCGAAACTTCCATGACCGGATATCGGAGATGTTTGCAGAACTTCTGAGATCCGATCTCAGGTTTTTGGAGTCGGGTGAGGTTGAAAAAATCGGCTTTGCTTCCAAATTTTGTCCTTCAGTCAATTCTTCATATGATAAAGCAACGCTGATATGTGAAAATATAGCAAGGAGAATGTTCCCGAAGCATTGTTATGAAGAATACAAAGATGTTGAGGAAGCTCATTATGCCTACAGGGTTCGTGAGCGCCTGCGGAAACAGGTACTCATTCCTCTGCGCAAAGCCTTAAAATTATCATCGGTGGAGATGAAGAATACGTTGGCTTTCGAAAACAGCAAAGCCTTTAATGGTTTGAAAATATACAAGGAGATTTCTAACCATGGTTATCTAAAGGGAAGCAAATTACTATTTCAAAAGTGCATGAAGCTTGTGGAGATGTTTGGGAATCCAAGCATTGGTGACGGGCTGAAACTTCCTAACGATATTGTAGCTTCCTTGATGAGCAAGGAACATAGTGATGAAATTGTGGAGCGTCAATGGCGGAAACTAGTCCAAGAGTTGTCAAACCAAGGCAAGCTGAGGAATTGTCTTGCCGTGTGTGACCTTCCCTTGAACATGAGAGGGACATACAAGGAGACAGCTTGTATTTCACTGGGGTTATTGATTTCAGAGCTGAGCGAAAATCCATGGAAAGGAAAGGTTTTCTCATTCAATGAAACTCCAACACTTCAAAAGATCGAAGGAGACGATCTTGAATCCAAGTGTGAGTTCATGAGACACAACATAGAGTGTGGAGACAAAGTTGATTTCTTCAAGATTTACAACCAAGTCTTGCAAATTGCCATTGAACAAAAGCTAAGCAACGAGCAGTTGCCCAAGAGGATTTTTGTGTTCACTTATAGGGATTTCGAGGCGGCTTCCAAGAACAATTGGGCAGAAGATTATAAAGAGGCATGGACTAATTACAGAAGAAGAGGGTACGCAAATGTACCACTGGTGGAGGCTAGGACTCAATACAAAAAGAAAGGGTACAAAACTCTGCCACACATTTTGTTTTGGAATCTTAAGAATTCCATTGCTGAGCCAGAGATAATTTGTAGCCCTGTTAATTACAAATGTGGGGGGCTGATTATAACTGGGTTGTCGAACAGTTTGATTAGTATGTTCTTAGTGGGAGAGTCGGATTCGAGAACATATGCACCTCATGTCCAGGCACCTTACGGTATCGGTTCGCTGTCGGTACTGAAATTTCTTCCCAAAGCTGAGGATGTGATGAAATCTGTATTTTTGAGAGATGAATTATTAAAGAACCTCCTTATATTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

539

Amino Acids

62.42

Weight (kDa)

8.41

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 2 - 71 1.6e-07 Domain of unknown function (DUF2828)
DUF2828 PF11443 70 - 290 3.3e-44 Domain of unknown function (DUF2828)
DUF7788 PF25043 292 - 428 4.9e-31 Domain of unknown function (DUF7788)
DUF7788 PF25043 434 - 490 5.7e-06 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1236, 1424
Acc16I TGCGCA 1 cut(s) 569
Acc65I GGTACC 1 cut(s) 273
AccB1I GGYRCC 2 cut(s) 273, 1504
AccB7I CCANNNNNTGG 1 cut(s) 746
AccII CGCG 1 cut(s) 181
AciI CCGC 5 cut(s) 181, 261, 544, 832, 1205
AclWI GGATC 2 cut(s) 123, 336
AcsI RAATTY 3 cut(s) 398, 1360, 1538
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 6 cut(s) 275, 555, 1271, 1281, 1322, 1533
AfiI CCNNNNNNNGG 6 cut(s) 270, 316, 351, 746, 983, 1612
AflII CTTAAG 1 cut(s) 1355
AhlI ACTAGT 1 cut(s) 838
AjnI CCWGG 1 cut(s) 1500
AjuI GAANNNNNNNTTGG 4 cut(s) 593, 625, 1043, 1075
AluBI AGCT 9 cut(s) 10, 512, 718, 782, 868, 932, 964, 1147, 1553
AluI AGCT 9 cut(s) 10, 512, 718, 782, 868, 932, 964, 1147, 1553
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 5 cut(s) 206, 920, 1029, 1060, 1080
Alw44I GTGCAC 1 cut(s) 47
AlwI GGATC 2 cut(s) 123, 336
Ama87I CYCGRG 1 cut(s) 201
ApaLI GTGCAC 1 cut(s) 47
ApoI RAATTY 3 cut(s) 398, 1360, 1538
Asp718I GGTACC 1 cut(s) 273
AspLEI GCGC 2 cut(s) 540, 570
AsuHPI GGTGA 2 cut(s) 380, 761
AsuII TTCGAA 1 cut(s) 618
AvaI CYCGRG 1 cut(s) 201
BaeGI GKGCMC 1 cut(s) 51
BanI GGYRCC 2 cut(s) 273, 1504
Bbv12I GWGCWC 1 cut(s) 51
BbvCI CCTCAGC 2 cut(s) 869, 1554
BceAI ACGGC 2 cut(s) 248, 869
BciT130I CCWGG 1 cut(s) 1502
BcoDI GTCTC 5 cut(s) 206, 920, 1029, 1060, 1080
BcuI ACTAGT 1 cut(s) 838
BfaI CTAG 3 cut(s) 249, 839, 1296
BfmI CTRYAG 1 cut(s) 523
BfoI RGCGCY 1 cut(s) 541
BfrI CTTAAG 1 cut(s) 1355
BisI GCNGC 1 cut(s) 1206
BlpI GCTNAGC 3 cut(s) 965, 1148, 1371
BlsI GCNGC 1 cut(s) 1207
Bme1390I CCNGG 1 cut(s) 1502
BmeT110I CYCGRG 1 cut(s) 201
BmiI GGNNCC 2 cut(s) 275, 1506
BmrFI CCNGG 1 cut(s) 1502
BmrI ACTGGG 2 cut(s) 953, 1437
BmuI ACTGGG 2 cut(s) 953, 1437
Bpu10I CCTNAGC 2 cut(s) 869, 1554
Bpu1102I GCTNAGC 3 cut(s) 965, 1148, 1371
Bpu14I TTCGAA 1 cut(s) 618
BsaJI CCNNGG 3 cut(s) 670, 859, 977
BsaWI WCCGGW 1 cut(s) 309
BsaXI ACNNNNNCTCC 2 cut(s) 1077, 1107
Bsc4I CCNNNNNNNGG 6 cut(s) 270, 316, 351, 746, 983, 1612
Bse1I ACTGG 3 cut(s) 948, 1290, 1432
Bse3DI GCAATG 1 cut(s) 1365
BseBI CCWGG 1 cut(s) 1502
BseDI CCNNGG 3 cut(s) 670, 859, 977
BseGI GGATG 1 cut(s) 1564
BseLI CCNNNNNNNGG 6 cut(s) 270, 316, 351, 746, 983, 1612
BseMI GCAATG 1 cut(s) 1365
BseMII CTCAG 7 cut(s) 300, 329, 364, 860, 956, 1362, 1545
BseNI ACTGG 3 cut(s) 948, 1290, 1432
BseSI GKGCMC 1 cut(s) 51
Bsh1236I CGCG 1 cut(s) 181
BshNI GGYRCC 2 cut(s) 273, 1504
BsiHKAI GWGCWC 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 201
BsiSI CCGG 1 cut(s) 310
BslFI GGGAC 1 cut(s) 928
BslI CCNNNNNNNGG 6 cut(s) 270, 316, 351, 746, 983, 1612
BsmAI GTCTC 5 cut(s) 206, 920, 1029, 1060, 1080
BsmBI CGTCTC 1 cut(s) 1029
BsmFI GGGAC 1 cut(s) 928
BsoBI CYCGRG 1 cut(s) 201
Bsp119I TTCGAA 1 cut(s) 618
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 6 cut(s) 19, 115, 341, 346, 1026, 1039
Bsp1720I GCTNAGC 3 cut(s) 965, 1148, 1371
Bsp19I CCATGG 2 cut(s) 670, 977
BspACI CCGC 5 cut(s) 181, 261, 544, 832, 1205
BspCNI CTCAG 7 cut(s) 299, 330, 363, 861, 957, 1363, 1546
BspFNI CGCG 1 cut(s) 181
BspHI TCATGA 1 cut(s) 1062
BspLI GGNNCC 2 cut(s) 275, 1506
BspPI GGATC 2 cut(s) 123, 336
BspT104I TTCGAA 1 cut(s) 618
BspT107I GGYRCC 2 cut(s) 273, 1504
BspTI CTTAAG 1 cut(s) 1355
BsrDI GCAATG 1 cut(s) 1365
BsrI ACTGG 3 cut(s) 948, 1290, 1432
BssECI CCNNGG 3 cut(s) 670, 859, 977
BssMI GATC 6 cut(s) 19, 115, 341, 346, 1026, 1039
BssT1I CCWWGG 3 cut(s) 670, 859, 977
Bst2UI CCWGG 1 cut(s) 1502
Bst4CI ACNGT 2 cut(s) 1442, 1514
Bst6I CTCTTC 2 cut(s) 204, 1258
BstAFI CTTAAG 1 cut(s) 1355
BstBI TTCGAA 1 cut(s) 618
BstC8I GCNNGC 2 cut(s) 542, 866
BstDEI CTNAG 9 cut(s) 286, 338, 350, 869, 965, 1148, 1371, 1459, 1554
BstDSI CCRYGG 2 cut(s) 670, 977
BstF5I GGATG 1 cut(s) 1564
BstFNI CGCG 1 cut(s) 181
BstH2I RGCGCY 1 cut(s) 541
BstHHI GCGC 2 cut(s) 540, 570
BstKTI GATC 6 cut(s) 22, 118, 344, 349, 1029, 1042
BstMAI GTCTC 5 cut(s) 206, 920, 1029, 1060, 1080
BstMBI GATC 6 cut(s) 19, 115, 341, 346, 1026, 1039
BstMWI GCNNNNNNNGC 3 cut(s) 260, 518, 829
BstNI CCWGG 1 cut(s) 1502
BstSCI CCNGG 1 cut(s) 1500
BstSFI CTRYAG 1 cut(s) 523
BstSLI GKGCMC 1 cut(s) 51
BstUI CGCG 1 cut(s) 181
BstX2I RGATCY 2 cut(s) 115, 341
BstYI RGATCY 2 cut(s) 115, 341
BtgI CCRYGG 2 cut(s) 670, 977
BtsCI GGATG 1 cut(s) 1564
BtsIMutI CAGTG 2 cut(s) 941, 1283
Cac8I GCNNGC 2 cut(s) 542, 866
CciI TCATGA 1 cut(s) 1062
CfoI GCGC 2 cut(s) 540, 570
CseI GACGC 1 cut(s) 812
Csp6I GTAC 6 cut(s) 274, 554, 1270, 1280, 1321, 1532
CspCI CAANNNNNGTGG 2 cut(s) 1323, 1358
CviQI GTAC 6 cut(s) 274, 554, 1270, 1280, 1321, 1532
DdeI CTNAG 9 cut(s) 286, 338, 350, 869, 965, 1148, 1371, 1459, 1554
DpnI GATC 6 cut(s) 21, 117, 343, 348, 1028, 1041
DpnII GATC 6 cut(s) 19, 115, 341, 346, 1026, 1039
Eam1104I CTCTTC 2 cut(s) 204, 1258
EarI CTCTTC 2 cut(s) 204, 1258
EciI GGCGGA 1 cut(s) 847
Eco130I CCWWGG 3 cut(s) 670, 859, 977
Eco32I GATATC 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 393
Eco88I CYCGRG 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 1360
EcoRII CCWGG 1 cut(s) 1500
EcoRV GATATC 1 cut(s) 315
EcoT14I CCWWGG 3 cut(s) 670, 859, 977
ErhI CCWWGG 3 cut(s) 670, 859, 977
Esp3I CGTCTC 1 cut(s) 1029
FaqI GGGAC 1 cut(s) 928
FauNDI CATATG 2 cut(s) 424, 1486
Fnu4HI GCNGC 1 cut(s) 1206
FokI GGATG 1 cut(s) 1571
Fsp4HI GCNGC 1 cut(s) 1206
FspBI CTAG 3 cut(s) 249, 839, 1296
FspI TGCGCA 1 cut(s) 569
GlaI GCGC 2 cut(s) 539, 569
GluI GCNGC 1 cut(s) 1206
HaeII RGCGCY 1 cut(s) 541
HapII CCGG 1 cut(s) 310
HgaI GACGC 1 cut(s) 812
HhaI GCGC 2 cut(s) 540, 570
Hin6I GCGC 2 cut(s) 538, 568
HinP1I GCGC 2 cut(s) 538, 568
HindIII AAGCTT 1 cut(s) 716
HinfI GANTC 9 cut(s) 149, 284, 362, 736, 1046, 1300, 1351, 1469, 1475
HpaII CCGG 1 cut(s) 310
HphI GGTGA 2 cut(s) 380, 761
Hpy166II GTNNAC 2 cut(s) 49, 1185
Hpy188I TCNGA 6 cut(s) 289, 319, 339, 346, 961, 1474
Hpy188III TCNNGA 7 cut(s) 203, 472, 533, 1043, 1063, 1105, 1479
Hpy8I GTNNAC 2 cut(s) 49, 1185
HpyAV CCTTC 4 cut(s) 224, 417, 905, 1025
HpyCH4III ACNGT 2 cut(s) 1442, 1514
HpyCH4IV ACGT 1 cut(s) 608
HpyCH4V TGCA 5 cut(s) 49, 329, 711, 1126, 1490
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 518, 829
HpyF3I CTNAG 9 cut(s) 286, 338, 350, 869, 965, 1148, 1371, 1459, 1554
HpySE526I ACGT 1 cut(s) 608
HspAI GCGC 2 cut(s) 538, 568
KpnI GGTACC 1 cut(s) 277
Kzo9I GATC 6 cut(s) 19, 115, 341, 346, 1026, 1039
LmnI GCTCC 1 cut(s) 820
MaeI CTAG 3 cut(s) 249, 839, 1296
MaeII ACGT 1 cut(s) 608
MaeIII GTNAC 2 cut(s) 749, 890
MalI GATC 6 cut(s) 21, 117, 343, 348, 1028, 1041
MboI GATC 6 cut(s) 19, 115, 341, 346, 1026, 1039
MfeI CAATTG 1 cut(s) 1219
MflI RGATCY 2 cut(s) 115, 341
MhlI GDGCHC 1 cut(s) 51
MlyI GAGTC 4 cut(s) 278, 371, 1294, 1478
MmeI TCCRAC 2 cut(s) 1037, 1452
MseI TTAA 5 cut(s) 578, 636, 1356, 1398, 1595
MslI CAYNNNNRTG 2 cut(s) 483, 807
MspCI CTTAAG 1 cut(s) 1355
MspI CCGG 1 cut(s) 310
MspR9I CCNGG 1 cut(s) 1502
MunI CAATTG 1 cut(s) 1219
MvaI CCWGG 1 cut(s) 1502
MvnI CGCG 1 cut(s) 181
MwoI GCNNNNNNNGC 3 cut(s) 260, 518, 829
NcoI CCATGG 2 cut(s) 670, 977
NdeI CATATG 2 cut(s) 424, 1486
NdeII GATC 6 cut(s) 19, 115, 341, 346, 1026, 1039
NlaIV GGNNCC 2 cut(s) 275, 1506
NmuCI GTSAC 2 cut(s) 749, 890
NsbI TGCGCA 1 cut(s) 569
NspV TTCGAA 1 cut(s) 618
PagI TCATGA 1 cut(s) 1062
PcsI WCGNNNNNNNCGW 1 cut(s) 1035
PfeI GAWTC 5 cut(s) 149, 736, 1046, 1351, 1475
PflMI CCANNNNNTGG 1 cut(s) 746
PkrI GCNGC 1 cut(s) 1207
PleI GAGTC 4 cut(s) 278, 370, 1294, 1477
PpsI GAGTC 4 cut(s) 278, 370, 1294, 1477
PsiI TTATAA 2 cut(s) 1236, 1424
Psp6I CCWGG 1 cut(s) 1500
PspGI CCWGG 1 cut(s) 1500
PspN4I GGNNCC 2 cut(s) 275, 1506
PsuI RGATCY 2 cut(s) 115, 341
RsaI GTAC 6 cut(s) 275, 555, 1271, 1281, 1322, 1533
RsaNI GTAC 6 cut(s) 274, 554, 1270, 1280, 1321, 1532
RseI CAYNNNNRTG 2 cut(s) 483, 807
SaqAI TTAA 5 cut(s) 578, 636, 1356, 1398, 1595
SatI GCNGC 1 cut(s) 1206
Sau3AI GATC 6 cut(s) 19, 115, 341, 346, 1026, 1039
SchI GAGTC 4 cut(s) 278, 371, 1294, 1478
ScrFI CCNGG 1 cut(s) 1502
SduI GDGCHC 1 cut(s) 51
SfcI CTRYAG 1 cut(s) 523
SfuI TTCGAA 1 cut(s) 618
SmiMI CAYNNNNRTG 2 cut(s) 483, 807
SmlI CTYRAG 1 cut(s) 1355
SmoI CTYRAG 1 cut(s) 1355
SpeI ACTAGT 1 cut(s) 838
SsiI CCGC 5 cut(s) 181, 261, 544, 832, 1205
SspMI CTAG 3 cut(s) 249, 839, 1296
StyD4I CCNGG 1 cut(s) 1500
StyI CCWWGG 3 cut(s) 670, 859, 977
TaaI ACNGT 2 cut(s) 1442, 1514
TaiI ACGT 1 cut(s) 611
TaqI TCGA 6 cut(s) 295, 618, 1029, 1200, 1436, 1478
TauI GCSGC 1 cut(s) 1208
TfiI GAWTC 5 cut(s) 149, 736, 1046, 1351, 1475
Tru1I TTAA 5 cut(s) 578, 636, 1356, 1398, 1595
Tru9I TTAA 5 cut(s) 578, 636, 1356, 1398, 1595
TscAI CASTG 2 cut(s) 948, 1290
TseFI GTSAC 2 cut(s) 749, 890
Tsp45I GTSAC 2 cut(s) 749, 890
TspDTI ATGAA 9 cut(s) 411, 501, 614, 728, 825, 1020, 1051, 1580, 1602
TspRI CASTG 2 cut(s) 948, 1290
Van91I CCANNNNNTGG 1 cut(s) 746
Vha464I CTTAAG 1 cut(s) 1355
VneI GTGCAC 1 cut(s) 47
XapI RAATTY 3 cut(s) 398, 1360, 1538
XspI CTAG 3 cut(s) 249, 839, 1296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.