Rmu_sc0000010.1_g000029

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000010.1
OG0001292
Physical Location & Seq
Reverse (-)
120734 .. 122422
1689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000010.1_g000029.1.cds

Sequence Viewer

Length: 1689 bp
atggagaagcctaacaaagaagcgttctacaaatccctcttgtgggtccacaaaaaccacccaaaaaccctagctctgaatgtcatggttttcggggctttaggttggttcgatgatctgttggaaattctcaaaagggttttggaggactccattcatagacttacaaacccagaaaagaaggatgagctaattatatcaaactacaggaggaggatatcaaactataggagcaatcgtttgggatacgactatgaggaagaaagtgatgacgatgatgatgacgaaaagaagaccgcagaaatagcaccaaaagatgacattgcaaaggctagaattgcagttcagaggtaccaaaacgactcagattatcgattcttacacgatcggatatcagacttgtttgcagaggtgttgaaatcagatctgaggttcttggcatcaggtgcaattaaatcgataagctttgcttccaagttttgtccttcaattgattccccttacgactacgaaaccctaatctgtgaaagcatagcaaagaaaatgttcccacgcaataatcatatagagtacaaatatgttgaagacccttattacacttacagggttcgtaatcgtttgggggaccaagtactaattcctctacgtgaagccatagagaaggtgaagaagccatcaattgaaaccgggaaagcattgattgctctggaaacatataggaagatattcgggccggagtcaaaagaagaaggaggcagcatagtgctgtttcatcattgcatgaagctaatcgagttcttttcaccgaaggaaaatatggtcggcgtgtttgggaatttaagcattggcgactgttctaaaaagctccctcaccaaatagtggtttccttatttaagaaggaaaaggtaaagggacgtggaccacgtggtgatgaagctgcagagctcgagtggaagggactactgcaagagttaacaaaccaaggcaagctcaggaattgtgttaccgtctgtgacatgaggtcgagcatgacagggacattcaaggaggcggcttgtatctcaatgggattattgatttcggagttgagtgaaaatccatggaaaggaaagatcttctccttcaacgaatttcccaagctgaaaaaggttgaaggagacgatcttcaatccaaatgcgagttcatgaggcagatggaatgcacggagaaagttaacttcggcgctatttacaatcggattttgcagattgcactcacagagaagctaagtaaggagcaaatgcctaaaaggattttcgtcttcacctatagtgattttgtcgcggcctccaaaaacaactggaatgaagaatacagggaagcatgggctagttacagaaagagagggttttcaactgtgccgcaaatggtgttttggaatcttagggacccggttggggagccggaggtatttgggagcccggtgaagaaccaaaatggggggatgatcatgactggtttttcaaaccttctgctcaaactgttcttcagaggagagacggattcgagaacgaatgctggtcggagccattctttttatcgtggtgttaatgtactttccgtgatgaaatatgttcctaatgtagaggatgtgatgaactgtgcaatttcaagagaggagttgaagaatcttattgtattggattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

562

Amino Acids

64.85

Weight (kDa)

8.3

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 351
AccB1I GGYRCC 1 cut(s) 351
AccB7I CCANNNNNTGG 1 cut(s) 880
AccII CGCG 1 cut(s) 1325
AciI CCGC 4 cut(s) 297, 1052, 1325, 1403
AcsI RAATTY 3 cut(s) 126, 835, 1130
AcuI CTGAAG 1 cut(s) 1513
AcvI CACGTG 1 cut(s) 926
AdeI CACNNNGTG 1 cut(s) 929
AfaI GTAC 4 cut(s) 353, 572, 633, 1596
AfiI CCNNNNNNNGG 6 cut(s) 42, 43, 880, 1106, 1438, 1480
AhdI GACNNNNNGTC 1 cut(s) 1021
AjiI CACGTC 1 cut(s) 917
AjuI GAANNNNNNNTTGG 4 cut(s) 621, 653, 1166, 1198
Alw21I GWGCWC 1 cut(s) 948
Alw26I GTCTC 2 cut(s) 1152, 1532
Ama87I CYCGRG 1 cut(s) 947
AoxI GGCC 2 cut(s) 731, 1326
ApeKI GCWGC 2 cut(s) 756, 938
ApoI RAATTY 3 cut(s) 126, 835, 1130
Asp700I GAANNNNTTC 2 cut(s) 545, 725
Asp718I GGTACC 1 cut(s) 351
AspLEI GCGC 1 cut(s) 1226
AspS9I GGNCC 5 cut(s) 46, 625, 731, 920, 1429
AsuC2I CCSGG 3 cut(s) 688, 1433, 1463
AsuHPI GGTGA 6 cut(s) 676, 795, 863, 941, 1297, 1477
AvaI CYCGRG 1 cut(s) 947
AvaII GGWCC 4 cut(s) 46, 625, 920, 1429
BanI GGYRCC 1 cut(s) 351
BanII GRGCYC 2 cut(s) 948, 1463
BbrPI CACGTG 1 cut(s) 926
BbsI GAAGAC 3 cut(s) 299, 591, 1294
Bbv12I GWGCWC 1 cut(s) 948
BbvI GCAGC 2 cut(s) 768, 925
BccI CCATC 2 cut(s) 682, 1189
BcgI CGANNNNNNTGC 2 cut(s) 438, 472
BciVI GTATCC 1 cut(s) 239
BclI TGATCA 1 cut(s) 1488
BcnI CCSGG 3 cut(s) 688, 1433, 1463
BcoDI GTCTC 2 cut(s) 1152, 1532
BfaI CTAG 3 cut(s) 71, 333, 1371
BfmI CTRYAG 4 cut(s) 205, 226, 939, 1309
BfoI RGCGCY 1 cut(s) 1227
BfuI GTATCC 1 cut(s) 239
BglII AGATCT 2 cut(s) 424, 1113
BisI GCNGC 5 cut(s) 757, 939, 1053, 1326, 1403
BlsI GCNGC 5 cut(s) 758, 940, 1054, 1327, 1404
BmcAI AGTACT 1 cut(s) 633
Bme1390I CCNGG 3 cut(s) 688, 1433, 1463
Bme18I GGWCC 4 cut(s) 46, 625, 920, 1429
BmeRI GACNNNNNGTC 1 cut(s) 1021
BmeT110I CYCGRG 1 cut(s) 947
BmgBI CACGTC 1 cut(s) 917
BmgT120I GGNCC 5 cut(s) 46, 625, 731, 920, 1429
BmiI GGNNCC 8 cut(s) 47, 353, 626, 1430, 1431, 1443, 1460, 1568
BmrFI CCNGG 3 cut(s) 688, 1433, 1463
BmsI GCATC 1 cut(s) 449
BpiI GAAGAC 3 cut(s) 299, 591, 1294
Bpu10I CCTNAGC 1 cut(s) 992
BpuMI CCSGG 3 cut(s) 688, 1433, 1463
Bsa29I ATCGAT 2 cut(s) 373, 458
BsaAI YACGTR 2 cut(s) 647, 926
BsaJI CCNNGG 2 cut(s) 982, 1100
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bsc4I CCNNNNNNNGG 6 cut(s) 42, 43, 880, 1106, 1438, 1480
Bse1I ACTGG 2 cut(s) 1346, 1501
Bse3DI GCAATG 2 cut(s) 321, 775
BseCI ATCGAT 2 cut(s) 373, 458
BseDI CCNNGG 2 cut(s) 982, 1100
BseGI GGATG 3 cut(s) 190, 1491, 1636
BseLI CCNNNNNNNGG 6 cut(s) 42, 43, 880, 1106, 1438, 1480
BseMI GCAATG 2 cut(s) 321, 775
BseMII CTCAG 3 cut(s) 378, 419, 1006
BseNI ACTGG 2 cut(s) 1346, 1501
BseRI GAGGAG 3 cut(s) 226, 1548, 1673
BseXI GCAGC 2 cut(s) 768, 925
Bsh1236I CGCG 1 cut(s) 1325
Bsh1285I CGRYCG 1 cut(s) 388
BshFI GGCC 2 cut(s) 733, 1328
BshNI GGYRCC 1 cut(s) 351
BshVI ATCGAT 2 cut(s) 373, 458
BsiEI CGRYCG 1 cut(s) 388
BsiHKAI GWGCWC 1 cut(s) 948
BsiHKCI CYCGRG 1 cut(s) 947
BsiSI CCGG 5 cut(s) 687, 734, 1433, 1445, 1463
BslFI GGGAC 5 cut(s) 638, 927, 972, 1051, 1442
BslI CCNNNNNNNGG 6 cut(s) 42, 43, 880, 1106, 1438, 1480
BsmAI GTCTC 2 cut(s) 1152, 1532
BsmBI CGTCTC 2 cut(s) 1152, 1532
BsmFI GGGAC 5 cut(s) 638, 927, 972, 1051, 1442
BsmI GAATGC 2 cut(s) 1205, 1561
BsnI GGCC 2 cut(s) 733, 1328
BsoBI CYCGRG 1 cut(s) 947
Bsp1286I GDGCHC 2 cut(s) 948, 1463
Bsp143I GATC 6 cut(s) 115, 385, 424, 1113, 1162, 1488
Bsp19I CCATGG 1 cut(s) 1100
BspACI CCGC 4 cut(s) 297, 1052, 1325, 1403
BspANI GGCC 2 cut(s) 733, 1328
BspCNI CTCAG 3 cut(s) 377, 420, 1005
BspDI ATCGAT 2 cut(s) 373, 458
BspFNI CGCG 1 cut(s) 1325
BspHI TCATGA 2 cut(s) 1185, 1491
BspLI GGNNCC 8 cut(s) 47, 353, 626, 1430, 1431, 1443, 1460, 1568
BspMAI CTGCAG 1 cut(s) 943
BspT107I GGYRCC 1 cut(s) 351
BsrDI GCAATG 2 cut(s) 321, 775
BsrI ACTGG 2 cut(s) 1346, 1501
BssECI CCNNGG 2 cut(s) 982, 1100
BssMI GATC 6 cut(s) 115, 385, 424, 1113, 1162, 1488
BssT1I CCWWGG 2 cut(s) 982, 1100
Bst4CI ACNGT 5 cut(s) 854, 1009, 1399, 1524, 1643
BstAPI GCANNNNNTGC 2 cut(s) 446, 701
BstBAI YACGTR 2 cut(s) 647, 926
BstC8I GCNNGC 1 cut(s) 989
BstDEI CTNAG 5 cut(s) 364, 428, 992, 1268, 1424
BstDSI CCRYGG 1 cut(s) 1100
BstF5I GGATG 3 cut(s) 190, 1491, 1636
BstFNI CGCG 1 cut(s) 1325
BstH2I RGCGCY 1 cut(s) 1227
BstHHI GCGC 1 cut(s) 1226
BstKTI GATC 6 cut(s) 118, 388, 427, 1116, 1165, 1491
BstMAI GTCTC 2 cut(s) 1152, 1532
BstMBI GATC 6 cut(s) 115, 385, 424, 1113, 1162, 1488
BstMCI CGRYCG 1 cut(s) 388
BstMWI GCNNNNNNNGC 4 cut(s) 305, 338, 446, 701
BstSCI CCNGG 3 cut(s) 686, 1431, 1461
BstSFI CTRYAG 4 cut(s) 205, 226, 939, 1309
BstUI CGCG 1 cut(s) 1325
BstV1I GCAGC 2 cut(s) 768, 925
BstV2I GAAGAC 3 cut(s) 299, 591, 1294
BstX2I RGATCY 2 cut(s) 424, 1113
BstYI RGATCY 2 cut(s) 424, 1113
Bsu15I ATCGAT 2 cut(s) 373, 458
BsuI GTATCC 1 cut(s) 239
BsuRI GGCC 2 cut(s) 733, 1328
BsuTUI ATCGAT 2 cut(s) 373, 458
BtgI CCRYGG 1 cut(s) 1100
BtrI CACGTC 1 cut(s) 917
BtsCI GGATG 3 cut(s) 190, 1491, 1636
Cac8I GCNNGC 1 cut(s) 989
CciI TCATGA 2 cut(s) 1185, 1491
CfoI GCGC 1 cut(s) 1226
Cfr13I GGNCC 5 cut(s) 46, 625, 731, 920, 1429
ClaI ATCGAT 2 cut(s) 373, 458
Csp6I GTAC 4 cut(s) 352, 571, 632, 1595
CviAII CATG 8 cut(s) 85, 781, 1018, 1030, 1101, 1186, 1365, 1492
CviQI GTAC 4 cut(s) 352, 571, 632, 1595
DdeI CTNAG 5 cut(s) 364, 428, 992, 1268, 1424
DpnI GATC 6 cut(s) 117, 387, 426, 1115, 1164, 1490
DpnII GATC 6 cut(s) 115, 385, 424, 1113, 1162, 1488
DraIII CACNNNGTG 1 cut(s) 929
DriI GACNNNNNGTC 1 cut(s) 1021
Eam1105I GACNNNNNGTC 1 cut(s) 1021
Ecl136II GAGCTC 1 cut(s) 946
Eco130I CCWWGG 2 cut(s) 982, 1100
Eco24I GRGCYC 2 cut(s) 948, 1463
Eco32I GATATC 2 cut(s) 219, 393
Eco47I GGWCC 4 cut(s) 46, 625, 920, 1429
Eco53kI GAGCTC 1 cut(s) 946
Eco57I CTGAAG 1 cut(s) 1513
Eco72I CACGTG 1 cut(s) 926
Eco88I CYCGRG 1 cut(s) 947
EcoICRI GAGCTC 1 cut(s) 946
EcoO109I RGGNCCY 1 cut(s) 1429
EcoRV GATATC 2 cut(s) 219, 393
EcoT14I CCWWGG 2 cut(s) 982, 1100
EcoT38I GRGCYC 2 cut(s) 948, 1463
ErhI CCWWGG 2 cut(s) 982, 1100
Esp3I CGTCTC 2 cut(s) 1152, 1532
FaeI CATG 8 cut(s) 88, 784, 1021, 1033, 1104, 1189, 1368, 1495
FalI AAGNNNNNCTT 2 cut(s) 454, 486
FaqI GGGAC 5 cut(s) 638, 927, 972, 1051, 1442
FatI CATG 8 cut(s) 84, 780, 1017, 1029, 1100, 1185, 1364, 1491
FbaI TGATCA 1 cut(s) 1488
Fnu4HI GCNGC 5 cut(s) 757, 939, 1053, 1326, 1403
FokI GGATG 3 cut(s) 197, 1498, 1643
FriOI GRGCYC 2 cut(s) 948, 1463
Fsp4HI GCNGC 5 cut(s) 757, 939, 1053, 1326, 1403
FspBI CTAG 3 cut(s) 71, 333, 1371
GlaI GCGC 1 cut(s) 1225
GluI GCNGC 5 cut(s) 757, 939, 1053, 1326, 1403
HaeII RGCGCY 1 cut(s) 1227
HaeIII GGCC 2 cut(s) 733, 1328
HapII CCGG 5 cut(s) 687, 734, 1433, 1445, 1463
HhaI GCGC 1 cut(s) 1226
Hin1II CATG 8 cut(s) 88, 784, 1021, 1033, 1104, 1189, 1368, 1495
Hin6I GCGC 1 cut(s) 1224
HinP1I GCGC 1 cut(s) 1224
HincII GTYRAC 2 cut(s) 975, 1216
HindII GTYRAC 2 cut(s) 975, 1216
HindIII AAGCTT 1 cut(s) 463
HinfI GANTC 8 cut(s) 149, 362, 375, 494, 737, 1420, 1544, 1669
HpaI GTTAAC 2 cut(s) 975, 1216
HpaII CCGG 5 cut(s) 687, 734, 1433, 1445, 1463
HphI GGTGA 6 cut(s) 676, 795, 863, 941, 1297, 1477
Hpy166II GTNNAC 4 cut(s) 49, 920, 975, 1216
Hpy188III TCNNGA 6 cut(s) 707, 994, 1186, 1492, 1548, 1653
Hpy8I GTNNAC 4 cut(s) 49, 920, 975, 1216
HpyCH4III ACNGT 5 cut(s) 854, 1009, 1399, 1524, 1643
HpyCH4IV ACGT 3 cut(s) 646, 916, 925
HpyF10VI GCNNNNNNNGC 4 cut(s) 305, 338, 446, 701
HpyF3I CTNAG 5 cut(s) 364, 428, 992, 1268, 1424
HpySE526I ACGT 3 cut(s) 646, 916, 925
Hsp92II CATG 8 cut(s) 88, 784, 1021, 1033, 1104, 1189, 1368, 1495
HspAI GCGC 1 cut(s) 1224
KflI GGGWCCC 1 cut(s) 1429
KpnI GGTACC 1 cut(s) 355
Ksp22I TGATCA 1 cut(s) 1488
KspAI GTTAAC 2 cut(s) 975, 1216
Kzo9I GATC 6 cut(s) 115, 385, 424, 1113, 1162, 1488
LmnI GCTCC 6 cut(s) 231, 870, 1276, 1441, 1458, 1566
Lsp1109I GCAGC 2 cut(s) 768, 925
LweI GCATC 1 cut(s) 449
MaeI CTAG 3 cut(s) 71, 333, 1371
MaeII ACGT 3 cut(s) 646, 916, 925
MaeIII GTNAC 3 cut(s) 1003, 1013, 1373
MalI GATC 6 cut(s) 117, 387, 426, 1115, 1164, 1490
MboI GATC 6 cut(s) 115, 385, 424, 1113, 1162, 1488
MfeI CAATTG 2 cut(s) 489, 678
MflI RGATCY 2 cut(s) 424, 1113
MhlI GDGCHC 2 cut(s) 948, 1463
MlyI GAGTC 3 cut(s) 143, 356, 746
MmeI TCCRAC 2 cut(s) 102, 1544
MroXI GAANNNNTTC 2 cut(s) 545, 725
MseI TTAA 6 cut(s) 453, 839, 894, 974, 1215, 1590
MspI CCGG 5 cut(s) 687, 734, 1433, 1445, 1463
MspR9I CCNGG 3 cut(s) 688, 1433, 1463
MunI CAATTG 2 cut(s) 489, 678
Mva1269I GAATGC 2 cut(s) 1205, 1561
MvnI CGCG 1 cut(s) 1325
MwoI GCNNNNNNNGC 4 cut(s) 305, 338, 446, 701
NciI CCSGG 3 cut(s) 688, 1433, 1463
NcoI CCATGG 1 cut(s) 1100
NdeII GATC 6 cut(s) 115, 385, 424, 1113, 1162, 1488
NlaIII CATG 8 cut(s) 88, 784, 1021, 1033, 1104, 1189, 1368, 1495
NlaIV GGNNCC 8 cut(s) 47, 353, 626, 1430, 1431, 1443, 1460, 1568
NmuCI GTSAC 1 cut(s) 1013
PaeR7I CTCGAG 1 cut(s) 947
PagI TCATGA 2 cut(s) 1185, 1491
PcsI WCGNNNNNNNCGW 1 cut(s) 922
PctI GAATGC 2 cut(s) 1205, 1561
PdmI GAANNNNTTC 2 cut(s) 545, 725
PfeI GAWTC 5 cut(s) 375, 494, 1420, 1544, 1669
PflMI CCANNNNNTGG 1 cut(s) 880
PkrI GCNGC 5 cut(s) 758, 940, 1054, 1327, 1404
Ple19I CGATCG 1 cut(s) 388
PleI GAGTC 3 cut(s) 143, 356, 745
PmaCI CACGTG 1 cut(s) 926
PmlI CACGTG 1 cut(s) 926
PpsI GAGTC 3 cut(s) 143, 356, 745
Ppu21I YACGTR 2 cut(s) 647, 926
PpuMI RGGWCCY 1 cut(s) 1429
Psp124BI GAGCTC 1 cut(s) 948
Psp5II RGGWCCY 1 cut(s) 1429
PspCI CACGTG 1 cut(s) 926
PspN4I GGNNCC 8 cut(s) 47, 353, 626, 1430, 1431, 1443, 1460, 1568
PspPI GGNCC 5 cut(s) 46, 625, 731, 920, 1429
PspPPI RGGWCCY 1 cut(s) 1429
PspXI VCTCGAGB 1 cut(s) 947
PstI CTGCAG 1 cut(s) 943
PsuI RGATCY 2 cut(s) 424, 1113
PvuI CGATCG 1 cut(s) 388
RsaI GTAC 4 cut(s) 353, 572, 633, 1596
RsaNI GTAC 4 cut(s) 352, 571, 632, 1595
SacI GAGCTC 1 cut(s) 948
SaqAI TTAA 6 cut(s) 453, 839, 894, 974, 1215, 1590
SatI GCNGC 5 cut(s) 757, 939, 1053, 1326, 1403
Sau3AI GATC 6 cut(s) 115, 385, 424, 1113, 1162, 1488
Sau96I GGNCC 5 cut(s) 46, 625, 731, 920, 1429
ScaI AGTACT 1 cut(s) 633
SchI GAGTC 3 cut(s) 143, 356, 746
ScrFI CCNGG 3 cut(s) 688, 1433, 1463
SduI GDGCHC 2 cut(s) 948, 1463
SfaNI GCATC 1 cut(s) 449
SfcI CTRYAG 4 cut(s) 205, 226, 939, 1309
Sfr274I CTCGAG 1 cut(s) 947
SinI GGWCC 4 cut(s) 46, 625, 920, 1429
SlaI CTCGAG 1 cut(s) 947
SmlI CTYRAG 1 cut(s) 947
SmoI CTYRAG 1 cut(s) 947
SsiI CCGC 4 cut(s) 297, 1052, 1325, 1403
SspMI CTAG 3 cut(s) 71, 333, 1371
SstI GAGCTC 1 cut(s) 948
StyD4I CCNGG 3 cut(s) 686, 1431, 1461
StyI CCWWGG 2 cut(s) 982, 1100
TaaI ACNGT 5 cut(s) 854, 1009, 1399, 1524, 1643
TaiI ACGT 3 cut(s) 649, 919, 928
TaqI TCGA 7 cut(s) 111, 373, 458, 792, 948, 1025, 1547
TatI WGTACW 3 cut(s) 570, 631, 1594
TauI GCSGC 3 cut(s) 1055, 1328, 1405
TfiI GAWTC 5 cut(s) 375, 494, 1420, 1544, 1669
Tru1I TTAA 6 cut(s) 453, 839, 894, 974, 1215, 1590
Tru9I TTAA 6 cut(s) 453, 839, 894, 974, 1215, 1590
TseFI GTSAC 1 cut(s) 1013
TseI GCWGC 2 cut(s) 756, 938
Tsp45I GTSAC 1 cut(s) 1013
TspDTI ATGAA 8 cut(s) 146, 761, 797, 948, 1174, 1362, 1622, 1652
TspGWI ACGGA 3 cut(s) 1220, 1556, 1591
Van91I CCANNNNNTGG 1 cut(s) 880
VpaK11BI GGWCC 4 cut(s) 46, 625, 920, 1429
XapI RAATTY 3 cut(s) 126, 835, 1130
XhoI CTCGAG 1 cut(s) 947
XmnI GAANNNNTTC 2 cut(s) 545, 725
XspI CTAG 3 cut(s) 71, 333, 1371
ZrmI AGTACT 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.