Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001292

Physical Location & Seq

Genomic Coordinates Reverse (-)

61730416 .. 61731714

Gene Structure 1299 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00211260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTTTGCAGAACTTCTGAGATCCGATCTCAGGGTTCGTGAGCGCCTGCGGAAACAGGTACTCATTCCTCTGCGCAAAGCCTTAAAATTATCATCGGTGGAGATGAAGAATGCGTTGGCTTTAGAAAACAGCAAAGCCTTTAATGGTTTGAAAATATACAAGGAGATTTCTAACCATGGTTATCTAAAGGGAAGCAAATTACTATTTCAAAAGTGCATGAAGCTTGTGGAGACGTTTGGGAATCCAAGCATTGGTGACGGGCTGAAACTTCCTAACGATATTGTAGCTTCCTTGATGAGCAAGGAACATAGTGATGAAATTGTGGAGCGTCAATGGCGGAAACTAGTCCAAGGGTTGTCAAACCAAGGCAAGCTGAGGAATTGTCTTGCCGTGTGTGACCTTCCCTTGAACATGAGAGGGACATACAAGGAGACAGCTTGTATTTCACTGGGGTTATTGATTTCAGAGCTGAGCGAAAATCCATGGACGGGAAAGGTTTTCTCATTCAATGAAACTCCAACACTTCAAAAGATCGAAGGAGACGATCTTGAATCCAAGTGTGAGTTCATGAGACACAACATAGAGTGTGGAGACAAAGTTGATTTCTTCAAGATTTACAACCAAGTCTTGCAAATTGCCGTTGAACAAAAGCTAAGCAATGAGCAGTTGCCCAAGAGGATTTTTGTGGTCACTTATAGGGATTTAGAGGCGGCTTCCAAGAACAATTGGGCAGAAGATTATAAAGAGGCATGGACTAATTACAGAAGAAGAGGGTACGCAAATGTACCACTGGTGGAGGCTAGGACTCAATACAAAAAGAAAGGGTACAAAACTCTGCCACACATTTTGTTTTGGAATCTTAAGAATTCCATTGCTGAGCCAGAGATAATTTGTAGCCCTGTTAATAACAAATGTGGGGGGCTGATTATAACTGGGTTGTCGAACAGTTTGATCAGCATGTTCTTAGTGGGAGAGTCGGATTCAAGAACATATGCACCTCATGTCCAGGCACCTTATGGTATCGGTTCGCTGTCGGTATTGAAATTTCTTCCCAAAGCTGAGGATGTGATGAAATCTGTATTTTTGAGAGATGAATTATTAGAGAACCTCCTTATATTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

374

Amino Acids

42.6

Weight (kDa)

8.99

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2828	PF11443	11 - 125	1.8e-07	Domain of unknown function (DUF2828)
DUF7788	PF25043	127 - 325	4.3e-35	Domain of unknown function (DUF7788)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001292)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04500 FvH4_2g04520 FvH4_2g04540 FvH4_2g04550
malus_domestica	MD05G1095800.v1.1 MD05G1215400.v1.1
prunus_persica	Prupe.8G139800_v2.0.a1 Prupe.8G139900_v2.0.a1 Prupe.8G140000_v2.0.a1 Prupe.8G140100_v2.0.a1 Prupe.8G140200_v2.0.a1
pyrus_communis	pycom05g09450
rosa_chinensis	RchiOBHm_Chr6g0254021 RchiOBHm_Chr6g0254031 RchiOBHm_Chr6g0254051 RchiOBHm_Chr6g0254071 RchiOBHm_Chr6g0254131
rosa_laevigata	RLG00000014941 RLG00000014945 RLG00000014947 RLG00000014948 RLG00000028713
rosa_multiflora	Rmu_co8068492.1_g000001 Rmu_co8292957.1_g000001 Rmu_sc0000010.1_g000029 Rmu_sc0001716.1_g000022 Rmu_sc0001716.1_g000026 Rmu_sc0001716.1_g000030
rosa_roxburghii	Rroxscaffold_7G00211140 Rroxscaffold_7G00211260 Rroxscaffold_7G00211290 Rroxscaffold_7G00211300
rosa_rugosa	Rorug05G0549000
rosa_samantha	Rh6AG065500 Rh6AG065600 Rh6AG065800 Rh6AG066400 Rh6BG058400 Rh6BG058600 Rh6BG059500 Rh6CG058500 Rh6CG058600 Rh6CG058700 Rh6CG058800 Rh6CG059100 Rh6CG059200 Rh6DG055300 Rh6DG055400 Rh6DG055500 Rh6DG055600 Rh6DG056000 Rh6DG056100
rosa_wichuraiana	Rw6G005770 Rw6G005790 Rw6G005830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	741, 929
Acc16I	TGCGCA	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	1009
AccB7I	CCANNNNNTGG	1 cut(s)	251
AciI	CCGC	3 cut(s)	49, 337, 710
AclWI	GGATC	1 cut(s)	15
AcsI	RAATTY	2 cut(s)	865, 1043
AfaI	GTAC	4 cut(s)	60, 776, 786, 827
AfiI	CCNNNNNNNGG	4 cut(s)	30, 251, 488, 1117
AflII	CTTAAG	1 cut(s)	860
AhlI	ACTAGT	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	1005
AjuI	GAANNNNNNNTTGG	4 cut(s)	98, 130, 548, 580
AluBI	AGCT	7 cut(s)	223, 287, 373, 437, 469, 652, 1058
AluI	AGCT	7 cut(s)	223, 287, 373, 437, 469, 652, 1058
Alw26I	GTCTC	5 cut(s)	224, 425, 534, 565, 585
AlwI	GGATC	1 cut(s)	15
ApoI	RAATTY	2 cut(s)	865, 1043
AspLEI	GCGC	2 cut(s)	45, 75
AsuHPI	GGTGA	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	1009
BbvCI	CCTCAGC	2 cut(s)	374, 1059
BceAI	ACGGC	2 cut(s)	374, 623
BciT130I	CCWGG	1 cut(s)	1007
BclI	TGATCA	1 cut(s)	951
BcoDI	GTCTC	5 cut(s)	224, 425, 534, 565, 585
BcuI	ACTAGT	1 cut(s)	343
BfaI	CTAG	2 cut(s)	344, 801
BfoI	RGCGCY	1 cut(s)	46
BfrI	CTTAAG	1 cut(s)	860
BisI	GCNGC	1 cut(s)	711
BlpI	GCTNAGC	3 cut(s)	470, 653, 876
BlsI	GCNGC	1 cut(s)	712
Bme1390I	CCNGG	1 cut(s)	1007
BmiI	GGNNCC	1 cut(s)	1011
BmrFI	CCNGG	1 cut(s)	1007
BmrI	ACTGGG	2 cut(s)	458, 942
BmuI	ACTGGG	2 cut(s)	458, 942
Bpu10I	CCTNAGC	2 cut(s)	374, 1059
Bpu1102I	GCTNAGC	3 cut(s)	470, 653, 876
BsaJI	CCNNGG	4 cut(s)	175, 349, 364, 482
BsaXI	ACNNNNNCTCC	2 cut(s)	582, 612
Bsc4I	CCNNNNNNNGG	4 cut(s)	30, 251, 488, 1117
Bse1I	ACTGG	3 cut(s)	453, 795, 937
Bse3DI	GCAATG	2 cut(s)	664, 870
BseBI	CCWGG	1 cut(s)	1007
BseDI	CCNNGG	4 cut(s)	175, 349, 364, 482
BseGI	GGATG	1 cut(s)	1069
BseLI	CCNNNNNNNGG	4 cut(s)	30, 251, 488, 1117
BseMI	GCAATG	2 cut(s)	664, 870
BseMII	CTCAG	6 cut(s)	8, 43, 365, 461, 867, 1050
BseNI	ACTGG	3 cut(s)	453, 795, 937
BshNI	GGYRCC	1 cut(s)	1009
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	4 cut(s)	30, 251, 488, 1117
BsmAI	GTCTC	5 cut(s)	224, 425, 534, 565, 585
BsmBI	CGTCTC	2 cut(s)	224, 534
BsmFI	GGGAC	1 cut(s)	433
BsmI	GAATGC	1 cut(s)	115
Bsp143I	GATC	5 cut(s)	20, 25, 531, 544, 951
Bsp1720I	GCTNAGC	3 cut(s)	470, 653, 876
Bsp19I	CCATGG	2 cut(s)	175, 482
BspACI	CCGC	3 cut(s)	49, 337, 710
BspCNI	CTCAG	6 cut(s)	9, 42, 366, 462, 868, 1051
BspHI	TCATGA	1 cut(s)	567
BspLI	GGNNCC	1 cut(s)	1011
BspPI	GGATC	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	1009
BspTI	CTTAAG	1 cut(s)	860
BsrDI	GCAATG	2 cut(s)	664, 870
BsrI	ACTGG	3 cut(s)	453, 795, 937
BssECI	CCNNGG	4 cut(s)	175, 349, 364, 482
BssMI	GATC	5 cut(s)	20, 25, 531, 544, 951
BssT1I	CCWWGG	4 cut(s)	175, 349, 364, 482
Bst2UI	CCWGG	1 cut(s)	1007
Bst4CI	ACNGT	1 cut(s)	947
Bst6I	CTCTTC	1 cut(s)	763
BstAFI	CTTAAG	1 cut(s)	860
BstC8I	GCNNGC	2 cut(s)	47, 371
BstDEI	CTNAG	8 cut(s)	17, 29, 374, 470, 653, 876, 964, 1059
BstDSI	CCRYGG	2 cut(s)	175, 482
BstF5I	GGATG	1 cut(s)	1069
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	2 cut(s)	45, 75
BstKTI	GATC	5 cut(s)	23, 28, 534, 547, 954
BstMAI	GTCTC	5 cut(s)	224, 425, 534, 565, 585
BstMBI	GATC	5 cut(s)	20, 25, 531, 544, 951
BstMWI	GCNNNNNNNGC	1 cut(s)	334
BstNI	CCWGG	1 cut(s)	1007
BstNSI	RCATGY	1 cut(s)	961
BstSCI	CCNGG	1 cut(s)	1005
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BtgI	CCRYGG	2 cut(s)	175, 482
BtsCI	GGATG	1 cut(s)	1069
BtsIMutI	CAGTG	2 cut(s)	446, 788
Cac8I	GCNNGC	2 cut(s)	47, 371
CciI	TCATGA	1 cut(s)	567
CfoI	GCGC	2 cut(s)	45, 75
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	4 cut(s)	59, 775, 785, 826
CspCI	CAANNNNNGTGG	2 cut(s)	828, 863
CviAII	CATG	8 cut(s)	176, 217, 412, 483, 568, 750, 958, 1001
CviQI	GTAC	4 cut(s)	59, 775, 785, 826
DdeI	CTNAG	8 cut(s)	17, 29, 374, 470, 653, 876, 964, 1059
DpnI	GATC	5 cut(s)	22, 27, 533, 546, 953
DpnII	GATC	5 cut(s)	20, 25, 531, 544, 951
Eam1104I	CTCTTC	1 cut(s)	763
EarI	CTCTTC	1 cut(s)	763
EciI	GGCGGA	1 cut(s)	352
Eco130I	CCWWGG	4 cut(s)	175, 349, 364, 482
EcoRI	GAATTC	1 cut(s)	865
EcoRII	CCWGG	1 cut(s)	1005
EcoT14I	CCWWGG	4 cut(s)	175, 349, 364, 482
ErhI	CCWWGG	4 cut(s)	175, 349, 364, 482
Esp3I	CGTCTC	2 cut(s)	224, 534
FaeI	CATG	8 cut(s)	179, 220, 415, 486, 571, 753, 961, 1004
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	8 cut(s)	175, 216, 411, 482, 567, 749, 957, 1000
FauNDI	CATATG	1 cut(s)	991
FbaI	TGATCA	1 cut(s)	951
Fnu4HI	GCNGC	1 cut(s)	711
FokI	GGATG	1 cut(s)	1076
Fsp4HI	GCNGC	1 cut(s)	711
FspBI	CTAG	2 cut(s)	344, 801
FspI	TGCGCA	1 cut(s)	74
GlaI	GCGC	2 cut(s)	44, 74
GluI	GCNGC	1 cut(s)	711
HaeII	RGCGCY	1 cut(s)	46
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	2 cut(s)	45, 75
Hin1II	CATG	8 cut(s)	179, 220, 415, 486, 571, 753, 961, 1004
Hin6I	GCGC	2 cut(s)	43, 73
HinP1I	GCGC	2 cut(s)	43, 73
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	6 cut(s)	241, 551, 805, 856, 974, 980
HphI	GGTGA	1 cut(s)	266
Hpy188I	TCNGA	4 cut(s)	18, 25, 466, 979
Hpy188III	TCNNGA	5 cut(s)	38, 548, 568, 610, 984
HpyAV	CCTTC	2 cut(s)	410, 530
HpyCH4III	ACNGT	1 cut(s)	947
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	4 cut(s)	8, 216, 631, 995
HpyF10VI	GCNNNNNNNGC	1 cut(s)	334
HpyF3I	CTNAG	8 cut(s)	17, 29, 374, 470, 653, 876, 964, 1059
HpySE526I	ACGT	1 cut(s)	233
Hsp92II	CATG	8 cut(s)	179, 220, 415, 486, 571, 753, 961, 1004
HspAI	GCGC	2 cut(s)	43, 73
Ksp22I	TGATCA	1 cut(s)	951
Kzo9I	GATC	5 cut(s)	20, 25, 531, 544, 951
LmnI	GCTCC	1 cut(s)	325
MaeI	CTAG	2 cut(s)	344, 801
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	3 cut(s)	254, 395, 688
MalI	GATC	5 cut(s)	22, 27, 533, 546, 953
MboI	GATC	5 cut(s)	20, 25, 531, 544, 951
MboII	GAAGA	6 cut(s)	118, 598, 746, 777, 780, 1040
MfeI	CAATTG	1 cut(s)	724
MflI	RGATCY	1 cut(s)	20
MlyI	GAGTC	2 cut(s)	799, 983
MmeI	TCCRAC	2 cut(s)	542, 957
MseI	TTAA	5 cut(s)	83, 141, 861, 903, 1123
MslI	CAYNNNNRTG	1 cut(s)	312
MspCI	CTTAAG	1 cut(s)	860
MspR9I	CCNGG	1 cut(s)	1007
MunI	CAATTG	1 cut(s)	724
Mva1269I	GAATGC	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	1007
MwoI	GCNNNNNNNGC	1 cut(s)	334
NcoI	CCATGG	2 cut(s)	175, 482
NdeI	CATATG	1 cut(s)	991
NdeII	GATC	5 cut(s)	20, 25, 531, 544, 951
NlaIII	CATG	8 cut(s)	179, 220, 415, 486, 571, 753, 961, 1004
NlaIV	GGNNCC	1 cut(s)	1011
NmuCI	GTSAC	3 cut(s)	254, 395, 688
NsbI	TGCGCA	1 cut(s)	74
NspI	RCATGY	1 cut(s)	961
PagI	TCATGA	1 cut(s)	567
PcsI	WCGNNNNNNNCGW	1 cut(s)	540
PctI	GAATGC	1 cut(s)	115
PfeI	GAWTC	4 cut(s)	241, 551, 856, 980
PflMI	CCANNNNNTGG	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	712
PleI	GAGTC	2 cut(s)	799, 982
PpsI	GAGTC	2 cut(s)	799, 982
PsiI	TTATAA	2 cut(s)	741, 929
Psp6I	CCWGG	1 cut(s)	1005
PspGI	CCWGG	1 cut(s)	1005
PspN4I	GGNNCC	1 cut(s)	1011
PsuI	RGATCY	1 cut(s)	20
RsaI	GTAC	4 cut(s)	60, 776, 786, 827
RsaNI	GTAC	4 cut(s)	59, 775, 785, 826
RseI	CAYNNNNRTG	1 cut(s)	312
SaqAI	TTAA	5 cut(s)	83, 141, 861, 903, 1123
SatI	GCNGC	1 cut(s)	711
Sau3AI	GATC	5 cut(s)	20, 25, 531, 544, 951
SchI	GAGTC	2 cut(s)	799, 983
ScrFI	CCNGG	1 cut(s)	1007
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	860
SmoI	CTYRAG	1 cut(s)	860
SpeI	ACTAGT	1 cut(s)	343
SsiI	CCGC	3 cut(s)	49, 337, 710
SspMI	CTAG	2 cut(s)	344, 801
StyD4I	CCNGG	1 cut(s)	1005
StyI	CCWWGG	4 cut(s)	175, 349, 364, 482
TaaI	ACNGT	1 cut(s)	947
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	2 cut(s)	534, 941
TauI	GCSGC	1 cut(s)	713
TfiI	GAWTC	4 cut(s)	241, 551, 856, 980
Tru1I	TTAA	5 cut(s)	83, 141, 861, 903, 1123
Tru9I	TTAA	5 cut(s)	83, 141, 861, 903, 1123
TscAI	CASTG	2 cut(s)	453, 795
TseFI	GTSAC	3 cut(s)	254, 395, 688
Tsp45I	GTSAC	3 cut(s)	254, 395, 688
TspDTI	ATGAA	7 cut(s)	119, 233, 330, 525, 556, 1085, 1107
TspRI	CASTG	2 cut(s)	453, 795
Van91I	CCANNNNNTGG	1 cut(s)	251
Vha464I	CTTAAG	1 cut(s)	860
XapI	RAATTY	2 cut(s)	865, 1043
XceI	RCATGY	1 cut(s)	961
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1013
XspI	CTAG	2 cut(s)	344, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.