Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001292

Physical Location & Seq

Genomic Coordinates Forward (+)

9197699 .. 9199624

Gene Structure 1926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G005770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1926 bp

ATGGCTTCTCAGTTTTGTCTACTAGGGCCGTCGGAGCTCCGCCGCCCTAACCTCCCCAAAACCAACCGAACCCTTATGACAACCTCAGAATATCAGGACCCTTCGCTCTCAGACTTAAAGCCAATCTTAGAGTTTATCTTCGAGGATGCGAATTACGCTGGAAAGCCGGCTGTTCCGGCAGAGAGAATTTCCAAATATAAGCTAGATGACAGAGGGGAAACGGCTTGGAAGGTTGGCCCTCTCAAAACCCTCAAGCTTATATTGAGTCTCAGAGCGGCGGGGAAGCTTGACGATGACGGGTTTTACAGAACCCTGTTGTGGGTCCACAAAAACCATCCTTTAACCCTAGCTTTGAATCTCAAGGTTTTTGGGGATTTAGGGTTGTTCAAAGATGTGCTGGGAATTCTCCATAAGGTTTTGGAGGAATCCATATGTGGACATTATCTGTCGACTCCATATGGGTACTGGTGGACTCCATATGGGTACTATTTTTCATTCCTTGAAGGGTACGAGCGTTTAGAGAAGGAAGAGTACCCTTGGTCAGGATACGGGAAGGAAAAAGAGGAGAAAAATAAAGTTGAAGAGGTAGTTGTAGCATGGAGAAGAGCAGATGACATTTCAAAGGCTAAAATTGCAGTTGAGAGGTACCAAAATGACCAAAGGTATCGAAACTTGCATTATCAAGTAGCTGATTTGTTTGCAGGGTTCTTGAAATCTGATCTCAAATTTTTGGAATCAGGTGAGATTGAAAACATCAGTTTTGCAGCCAAATTTTGCCCTTCAATTGGTTCCAAATATGATAAAGAAACCTTGATATGTGAAGTCATTGCAAAGAGAATTTTCCCACGTGACGATTATGAAGAGTACAAAGATATTTTGGAACCCCATTATGGTTACAGGGTTCGTGATCGTTTGAGGAAGCAAGTACTTGTTCCTCTCCGTCATGCCCTAATGTCAAGTCAACTGAACAATGCTGCTGCGAGAAAATTGAAGATGCCACCCGAAACGGCCAAGGCTTTGAATTCTATGAAAATTTATAGGAAGATTATGTATTATGGGGGAAGCTATCAATTCAAGCAATGTATGAAGATTGTGGGCATGTATGGTGATGGGTTAAAACTTCCTCACCATGTAATAGATTCCTTGAACAATGGTCAGAGTAGTGATGAAATTGCTGAGTTTCAATGGCAGAGACTAATCCGAGAGTTGTCAGACAAAGGGAAGCTCAGGAATTGTATTGCTGTGTGTGACATTCCTGAAAGCATGAGAGGGACAACCAACGAAACAGTATGCATTGCAATGGGGTTATTGATTTCGGAACTGAGTGAATATCCATGGAAAGGAAAGGTTTTCTCTTTCAGTGATTTTCCCAAGCTTCATAAGTTTGAAGGAGAGAATCTTCGATCGAAATGTGAGTTCATGAAGCAGCATATGGAGTCTGCAAAGAAACTGAATTTCGGAGAGATTTACGACGGAGTGTTGGAGATTGCCATCAAAGAAAAGCTAGGGCACCATCAGATTCCGCAGAGGATTTTTGTGTTCACAGACAAGGATTTTGACATGGCATTCAAAAACGATTGGTTTGATGATTATGCAAAGGCTCTTTATGATTACAAAAATAGAGGGTATTTGTTTAATGTGCCAGACATGGTATTATGGAATCTTAAGGGTTCCATTTCTAAGCCAATGGCCATTTATAGCCTAGTGAAGGACCAGGATGTGGGGATGATTATTACCGGGTTTTCTAGCAATCTGCTTAGGTTGTTCTTGAATGCAGAGTCGGATTCACGATCTTGTGCACCCCAATTTCAGGCACCTTATGGTTTCAGTTACAGTTTCGCACCTAAATTGATTCCTAAACTAGAGGATCTGTTTAATTGTGCAGTTTCTAGAGGTGAATTTAAGAACCTGCTTGTATTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

641

Amino Acids

74.1

Weight (kDa)

8.36

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2828	PF11443	63 - 409	3.9e-58	Domain of unknown function (DUF2828)
DUF7788	PF25043	411 - 594	1e-40	Domain of unknown function (DUF7788)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001292)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04500 FvH4_2g04520 FvH4_2g04540 FvH4_2g04550
malus_domestica	MD05G1095800.v1.1 MD05G1215400.v1.1
prunus_persica	Prupe.8G139800_v2.0.a1 Prupe.8G139900_v2.0.a1 Prupe.8G140000_v2.0.a1 Prupe.8G140100_v2.0.a1 Prupe.8G140200_v2.0.a1
pyrus_communis	pycom05g09450
rosa_chinensis	RchiOBHm_Chr6g0254021 RchiOBHm_Chr6g0254031 RchiOBHm_Chr6g0254051 RchiOBHm_Chr6g0254071 RchiOBHm_Chr6g0254131
rosa_laevigata	RLG00000014941 RLG00000014945 RLG00000014947 RLG00000014948 RLG00000028713
rosa_multiflora	Rmu_co8068492.1_g000001 Rmu_co8292957.1_g000001 Rmu_sc0000010.1_g000029 Rmu_sc0001716.1_g000022 Rmu_sc0001716.1_g000026 Rmu_sc0001716.1_g000030
rosa_roxburghii	Rroxscaffold_7G00211140 Rroxscaffold_7G00211260 Rroxscaffold_7G00211290 Rroxscaffold_7G00211300
rosa_rugosa	Rorug05G0549000
rosa_samantha	Rh6AG065500 Rh6AG065600 Rh6AG065800 Rh6AG066400 Rh6BG058400 Rh6BG058600 Rh6BG059500 Rh6CG058500 Rh6CG058600 Rh6CG058700 Rh6CG058800 Rh6CG059100 Rh6CG059200 Rh6DG055300 Rh6DG055400 Rh6DG055500 Rh6DG055600 Rh6DG056000 Rh6DG056100
rosa_wichuraiana	Rw6G005770 Rw6G005790 Rw6G005830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1917
Acc65I	GGTACC	1 cut(s)	645
AccB1I	GGYRCC	3 cut(s)	645, 1509, 1813
AccB7I	CCANNNNNTGG	1 cut(s)	1720
AccBSI	CCGCTC	1 cut(s)	275
AccI	GTMKAC	2 cut(s)	19, 449
AciI	CCGC	5 cut(s)	40, 43, 275, 278, 1523
AclWI	GGATC	1 cut(s)	1875
AcoI	YGGCCR	2 cut(s)	1008, 1689
AcsI	RAATTY	9 cut(s)	186, 402, 725, 770, 837, 1021, 1032, 1453, 1898
AcvI	CACGTG	1 cut(s)	848
AfaI	GTAC	7 cut(s)	464, 485, 509, 533, 647, 866, 927
AfiI	CCNNNNNNNGG	9 cut(s)	318, 319, 542, 785, 890, 1340, 1708, 1720, 1810
AflII	CTTAAG	1 cut(s)	1664
AjnI	CCWGG	1 cut(s)	1713
Alw21I	GWGCWC	2 cut(s)	39, 1801
Alw26I	GTCTC	2 cut(s)	272, 1186
Alw44I	GTGCAC	1 cut(s)	1797
AlwI	GGATC	1 cut(s)	1875
AoxI	GGCC	4 cut(s)	26, 235, 1008, 1689
ApaLI	GTGCAC	1 cut(s)	1797
ApeKI	GCWGC	4 cut(s)	764, 974, 977, 1426
ApoI	RAATTY	9 cut(s)	186, 402, 725, 770, 837, 1021, 1032, 1453, 1898
ArsI	GACNNNNNNTTYG	2 cut(s)	1538, 1570
Asp718I	GGTACC	1 cut(s)	645
AspS9I	GGNCC	5 cut(s)	26, 97, 236, 322, 1711
AsuC2I	CCSGG	1 cut(s)	1738
AsuHPI	GGTGA	4 cut(s)	752, 1118, 1118, 1907
AvaII	GGWCC	3 cut(s)	97, 322, 1711
BaeGI	GKGCMC	2 cut(s)	1512, 1801
BaeI	ACNNNNGTAYC	2 cut(s)	499, 532
BalI	TGGCCA	1 cut(s)	1691
BanI	GGYRCC	3 cut(s)	645, 1509, 1813
BanII	GRGCYC	1 cut(s)	39
BarI	GAAGNNNNNNTAC	2 cut(s)	515, 547
BbrPI	CACGTG	1 cut(s)	848
Bbv12I	GWGCWC	2 cut(s)	39, 1801
BbvI	GCAGC	4 cut(s)	776, 961, 964, 1438
BccI	CCATC	4 cut(s)	342, 1103, 1499, 1521
BceAI	ACGGC	3 cut(s)	13, 237, 1023
BciT130I	CCWGG	1 cut(s)	1715
BciVI	GTATCC	1 cut(s)	539
BcnI	CCSGG	1 cut(s)	1738
BcoDI	GTCTC	2 cut(s)	272, 1186
BfaI	CTAG	8 cut(s)	23, 203, 347, 1505, 1703, 1746, 1862, 1890
BfrI	CTTAAG	1 cut(s)	1664
BfuAI	ACCTGC	1 cut(s)	1917
BfuI	GTATCC	1 cut(s)	539
BisI	GCNGC	6 cut(s)	43, 276, 765, 975, 978, 1427
BlsI	GCNGC	6 cut(s)	44, 277, 766, 976, 979, 1428
BmcAI	AGTACT	1 cut(s)	927
Bme1390I	CCNGG	2 cut(s)	1715, 1738
Bme18I	GGWCC	3 cut(s)	97, 322, 1711
BmgT120I	GGNCC	5 cut(s)	26, 97, 236, 322, 1711
BmiI	GGNNCC	8 cut(s)	99, 323, 647, 790, 882, 1511, 1672, 1815
BmrFI	CCNGG	2 cut(s)	1715, 1738
BmsI	GCATC	2 cut(s)	136, 984
Bpu10I	CCTNAGC	2 cut(s)	1226, 1757
BpuEI	CTTGAG	2 cut(s)	236, 344
BpuMI	CCSGG	1 cut(s)	1738
BsaAI	YACGTR	1 cut(s)	848
BsaBI	GATNNNNATC	1 cut(s)	1490
BsaJI	CCNNGG	3 cut(s)	536, 1011, 1334
Bsc4I	CCNNNNNNNGG	9 cut(s)	318, 319, 542, 785, 890, 1340, 1708, 1720, 1810
Bse118I	RCCGGY	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	470
Bse3DI	GCAATG	4 cut(s)	825, 1085, 1293, 1305
Bse8I	GATNNNNATC	1 cut(s)	1490
BseBI	CCWGG	1 cut(s)	1715
BseDI	CCNNGG	3 cut(s)	536, 1011, 1334
BseGI	GGATG	4 cut(s)	151, 334, 1723, 1731
BseJI	GATNNNNATC	1 cut(s)	1490
BseLI	CCNNNNNNNGG	9 cut(s)	318, 319, 542, 785, 890, 1340, 1708, 1720, 1810
BseMI	GCAATG	4 cut(s)	825, 1085, 1293, 1305
BseMII	CTCAG	7 cut(s)	23, 99, 123, 283, 1167, 1240, 1313
BseNI	ACTGG	1 cut(s)	470
BseRI	GAGGAG	1 cut(s)	578
BseSI	GKGCMC	2 cut(s)	1512, 1801
BseXI	GCAGC	4 cut(s)	776, 961, 964, 1438
BseYI	CCCAGC	1 cut(s)	397
BsgI	GTGCAG	1 cut(s)	1902
Bsh1285I	CGRYCG	1 cut(s)	1406
BshFI	GGCC	4 cut(s)	28, 237, 1010, 1691
BshNI	GGYRCC	3 cut(s)	645, 1509, 1813
BsiEI	CGRYCG	1 cut(s)	1406
BsiHKAI	GWGCWC	2 cut(s)	39, 1801
BsiSI	CCGG	3 cut(s)	167, 176, 1737
BslFI	GGGAC	1 cut(s)	1285
BslI	CCNNNNNNNGG	9 cut(s)	318, 319, 542, 785, 890, 1340, 1708, 1720, 1810
BsmAI	GTCTC	2 cut(s)	272, 1186
BsmFI	GGGAC	1 cut(s)	1285
BsmI	GAATGC	2 cut(s)	1565, 1777
BsnI	GGCC	4 cut(s)	28, 237, 1010, 1691
Bsp1286I	GDGCHC	3 cut(s)	39, 1512, 1801
Bsp143I	GATC	5 cut(s)	718, 907, 1403, 1790, 1867
Bsp19I	CCATGG	1 cut(s)	1334
BspACI	CCGC	5 cut(s)	40, 43, 275, 278, 1523
BspANI	GGCC	4 cut(s)	28, 237, 1010, 1691
BspCNI	CTCAG	7 cut(s)	22, 98, 122, 282, 1168, 1239, 1314
BspHI	TCATGA	1 cut(s)	1419
BspLI	GGNNCC	8 cut(s)	99, 323, 647, 790, 882, 1511, 1672, 1815
BspMI	ACCTGC	1 cut(s)	1917
BspPI	GGATC	1 cut(s)	1875
BspQI	GCTCTTC	1 cut(s)	598
BspT107I	GGYRCC	3 cut(s)	645, 1509, 1813
BspTI	CTTAAG	1 cut(s)	1664
BsrBI	CCGCTC	1 cut(s)	275
BsrDI	GCAATG	4 cut(s)	825, 1085, 1293, 1305
BsrFI	RCCGGY	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	470
BssAI	RCCGGY	1 cut(s)	166
BssECI	CCNNGG	3 cut(s)	536, 1011, 1334
BssMI	GATC	5 cut(s)	718, 907, 1403, 1790, 1867
BssT1I	CCWWGG	3 cut(s)	536, 1011, 1334
Bst2UI	CCWGG	1 cut(s)	1715
Bst4CI	ACNGT	2 cut(s)	1288, 1835
Bst6I	CTCTTC	4 cut(s)	522, 576, 598, 855
BstAFI	CTTAAG	1 cut(s)	1664
BstBAI	YACGTR	1 cut(s)	848
BstC8I	GCNNGC	1 cut(s)	168
BstDSI	CCRYGG	1 cut(s)	1334
BstENI	CCTNNNNNAGG	2 cut(s)	540, 1706
BstF5I	GGATG	4 cut(s)	151, 334, 1723, 1731
BstKTI	GATC	5 cut(s)	721, 910, 1406, 1793, 1870
BstMAI	GTCTC	2 cut(s)	272, 1186
BstMBI	GATC	5 cut(s)	718, 907, 1403, 1790, 1867
BstMCI	CGRYCG	1 cut(s)	1406
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 155, 176, 632
BstNI	CCWGG	1 cut(s)	1715
BstNSI	RCATGY	1 cut(s)	1102
BstSCI	CCNGG	2 cut(s)	1713, 1736
BstSLI	GKGCMC	2 cut(s)	1512, 1801
BstV1I	GCAGC	4 cut(s)	776, 961, 964, 1438
BstX2I	RGATCY	1 cut(s)	1867
BstYI	RGATCY	1 cut(s)	1867
BsuI	GTATCC	1 cut(s)	539
BsuRI	GGCC	4 cut(s)	28, 237, 1010, 1691
BtgI	CCRYGG	1 cut(s)	1334
BtsCI	GGATG	4 cut(s)	151, 334, 1723, 1731
BtsIMutI	CAGTG	1 cut(s)	1366
BveI	ACCTGC	1 cut(s)	1917
Cac8I	GCNNGC	1 cut(s)	168
CciI	TCATGA	1 cut(s)	1419
Cfr10I	RCCGGY	1 cut(s)	166
Cfr13I	GGNCC	5 cut(s)	26, 97, 236, 322, 1711
Csp6I	GTAC	7 cut(s)	463, 484, 508, 532, 646, 865, 926
CviAII	CATG	9 cut(s)	597, 944, 1099, 1130, 1264, 1335, 1420, 1561, 1648
CviQI	GTAC	7 cut(s)	463, 484, 508, 532, 646, 865, 926
DpnI	GATC	5 cut(s)	720, 909, 1405, 1792, 1869
DpnII	GATC	5 cut(s)	718, 907, 1403, 1790, 1867
EaeI	YGGCCR	2 cut(s)	1008, 1689
Eam1104I	CTCTTC	4 cut(s)	522, 576, 598, 855
EarI	CTCTTC	4 cut(s)	522, 576, 598, 855
EciI	GGCGGA	1 cut(s)	29
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	3 cut(s)	536, 1011, 1334
Eco24I	GRGCYC	1 cut(s)	39
Eco47I	GGWCC	3 cut(s)	97, 322, 1711
Eco53kI	GAGCTC	1 cut(s)	37
Eco72I	CACGTG	1 cut(s)	848
EcoICRI	GAGCTC	1 cut(s)	37
EcoNI	CCTNNNNNAGG	2 cut(s)	540, 1706
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRI	GAATTC	2 cut(s)	402, 1021
EcoRII	CCWGG	1 cut(s)	1713
EcoT14I	CCWWGG	3 cut(s)	536, 1011, 1334
EcoT22I	ATGCAT	1 cut(s)	1295
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	3 cut(s)	536, 1011, 1334
FaeI	CATG	9 cut(s)	600, 947, 1102, 1133, 1267, 1338, 1423, 1564, 1651
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FaqI	GGGAC	1 cut(s)	1285
FatI	CATG	9 cut(s)	596, 943, 1098, 1129, 1263, 1334, 1419, 1560, 1647
FauI	CCCGC	1 cut(s)	271
FauNDI	CATATG	4 cut(s)	431, 457, 478, 1431
FblI	GTMKAC	2 cut(s)	19, 449
Fnu4HI	GCNGC	6 cut(s)	43, 276, 765, 975, 978, 1427
FokI	GGATG	4 cut(s)	158, 321, 1730, 1738
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	6 cut(s)	43, 276, 765, 975, 978, 1427
FspBI	CTAG	8 cut(s)	23, 203, 347, 1505, 1703, 1746, 1862, 1890
GluI	GCNGC	6 cut(s)	43, 276, 765, 975, 978, 1427
GsaI	CCCAGC	1 cut(s)	401
HaeIII	GGCC	4 cut(s)	28, 237, 1010, 1691
HapII	CCGG	3 cut(s)	167, 176, 1737
Hin1II	CATG	9 cut(s)	600, 947, 1102, 1133, 1267, 1338, 1423, 1564, 1651
HincII	GTYRAC	2 cut(s)	450, 962
HindII	GTYRAC	2 cut(s)	450, 962
HindIII	AAGCTT	3 cut(s)	254, 284, 1373
HpaII	CCGG	3 cut(s)	167, 176, 1737
HphI	GGTGA	4 cut(s)	752, 1118, 1118, 1907
Hpy166II	GTNNAC	8 cut(s)	20, 325, 437, 450, 471, 962, 1542, 1799
Hpy8I	GTNNAC	8 cut(s)	20, 325, 437, 450, 471, 962, 1542, 1799
Hpy99I	CGWCG	2 cut(s)	34, 1475
HpyAV	CCTTC	8 cut(s)	111, 223, 497, 517, 547, 789, 1382, 1702
HpyCH4III	ACNGT	2 cut(s)	1288, 1835
HpyCH4IV	ACGT	1 cut(s)	847
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 155, 176, 632
HpySE526I	ACGT	1 cut(s)	847
Hsp92II	CATG	9 cut(s)	600, 947, 1102, 1133, 1267, 1338, 1423, 1564, 1651
KpnI	GGTACC	1 cut(s)	649
KroI	GCCGGC	1 cut(s)	166
KroNI	GCCGGC	1 cut(s)	168
Kzo9I	GATC	5 cut(s)	718, 907, 1403, 1790, 1867
LguI	GCTCTTC	1 cut(s)	598
LmnI	GCTCC	2 cut(s)	34, 42
Lsp1109I	GCAGC	4 cut(s)	776, 961, 964, 1438
LweI	GCATC	2 cut(s)	136, 984
MaeI	CTAG	8 cut(s)	23, 203, 347, 1505, 1703, 1746, 1862, 1890
MaeII	ACGT	1 cut(s)	847
MaeIII	GTNAC	4 cut(s)	848, 893, 1247, 1829
MalI	GATC	5 cut(s)	720, 909, 1405, 1792, 1869
MbiI	CCGCTC	1 cut(s)	275
MboI	GATC	5 cut(s)	718, 907, 1403, 1790, 1867
MboII	GAAGA	9 cut(s)	130, 539, 593, 615, 872, 1003, 1054, 1099, 1391
MfeI	CAATTG	1 cut(s)	783
MflI	RGATCY	1 cut(s)	1867
MhlI	GDGCHC	3 cut(s)	39, 1512, 1801
MlsI	TGGCCA	1 cut(s)	1691
MluNI	TGGCCA	1 cut(s)	1691
MlyI	GAGTC	5 cut(s)	274, 445, 466, 1445, 1787
MmeI	TCCRAC	3 cut(s)	12, 1461, 1761
Mox20I	TGGCCA	1 cut(s)	1691
Mph1103I	ATGCAT	1 cut(s)	1295
MroNI	GCCGGC	1 cut(s)	166
MscI	TGGCCA	1 cut(s)	1691
MseI	TTAA	7 cut(s)	116, 341, 1115, 1635, 1665, 1875, 1902
MslI	CAYNNNNRTG	1 cut(s)	1298
Msp20I	TGGCCA	1 cut(s)	1691
MspCI	CTTAAG	1 cut(s)	1664
MspI	CCGG	3 cut(s)	167, 176, 1737
MspR9I	CCNGG	2 cut(s)	1715, 1738
MunI	CAATTG	1 cut(s)	783
Mva1269I	GAATGC	2 cut(s)	1565, 1777
MvaI	CCWGG	1 cut(s)	1715
MwoI	GCNNNNNNNGC	4 cut(s)	34, 155, 176, 632
NaeI	GCCGGC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	1738
NcoI	CCATGG	1 cut(s)	1334
NdeI	CATATG	4 cut(s)	431, 457, 478, 1431
NdeII	GATC	5 cut(s)	718, 907, 1403, 1790, 1867
NgoMIV	GCCGGC	1 cut(s)	166
NlaIII	CATG	9 cut(s)	600, 947, 1102, 1133, 1267, 1338, 1423, 1564, 1651
NlaIV	GGNNCC	8 cut(s)	99, 323, 647, 790, 882, 1511, 1672, 1815
NmuCI	GTSAC	2 cut(s)	848, 1247
NsiI	ATGCAT	1 cut(s)	1295
NspI	RCATGY	1 cut(s)	1102
PagI	TCATGA	1 cut(s)	1419
PciSI	GCTCTTC	1 cut(s)	598
PctI	GAATGC	2 cut(s)	1565, 1777
PdiI	GCCGGC	1 cut(s)	168
PfeI	GAWTC	9 cut(s)	355, 425, 734, 1139, 1396, 1519, 1660, 1784, 1852
PflMI	CCANNNNNTGG	1 cut(s)	1720
PkrI	GCNGC	6 cut(s)	44, 277, 766, 976, 979, 1428
Ple19I	CGATCG	1 cut(s)	1406
PleI	GAGTC	5 cut(s)	273, 445, 466, 1444, 1786
PmaCI	CACGTG	1 cut(s)	848
PmlI	CACGTG	1 cut(s)	848
PpsI	GAGTC	5 cut(s)	273, 445, 466, 1444, 1786
Ppu21I	YACGTR	1 cut(s)	848
PpuMI	RGGWCCY	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	1713
PspCI	CACGTG	1 cut(s)	848
PspFI	CCCAGC	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	1713
PspN4I	GGNNCC	8 cut(s)	99, 323, 647, 790, 882, 1511, 1672, 1815
PspPI	GGNCC	5 cut(s)	26, 97, 236, 322, 1711
PspPPI	RGGWCCY	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	1867
PvuI	CGATCG	1 cut(s)	1406
RsaI	GTAC	7 cut(s)	464, 485, 509, 533, 647, 866, 927
RsaNI	GTAC	7 cut(s)	463, 484, 508, 532, 646, 865, 926
RseI	CAYNNNNRTG	1 cut(s)	1298
SacI	GAGCTC	1 cut(s)	39
SalI	GTCGAC	1 cut(s)	448
SapI	GCTCTTC	1 cut(s)	598
SaqAI	TTAA	7 cut(s)	116, 341, 1115, 1635, 1665, 1875, 1902
SatI	GCNGC	6 cut(s)	43, 276, 765, 975, 978, 1427
Sau3AI	GATC	5 cut(s)	718, 907, 1403, 1790, 1867
Sau96I	GGNCC	5 cut(s)	26, 97, 236, 322, 1711
ScaI	AGTACT	1 cut(s)	927
SchI	GAGTC	5 cut(s)	274, 445, 466, 1445, 1787
ScrFI	CCNGG	2 cut(s)	1715, 1738
SduI	GDGCHC	3 cut(s)	39, 1512, 1801
SfaNI	GCATC	2 cut(s)	136, 984
SinI	GGWCC	3 cut(s)	97, 322, 1711
SmiMI	CAYNNNNRTG	1 cut(s)	1298
SmlI	CTYRAG	3 cut(s)	251, 359, 1664
SmoI	CTYRAG	3 cut(s)	251, 359, 1664
SsiI	CCGC	5 cut(s)	40, 43, 275, 278, 1523
SspMI	CTAG	8 cut(s)	23, 203, 347, 1505, 1703, 1746, 1862, 1890
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	1713, 1736
StyI	CCWWGG	3 cut(s)	536, 1011, 1334
TaaI	ACNGT	2 cut(s)	1288, 1835
TaiI	ACGT	1 cut(s)	850
TaqI	TCGA	5 cut(s)	141, 449, 667, 1402, 1406
TatI	WGTACW	2 cut(s)	864, 925
TauI	GCSGC	2 cut(s)	45, 278
TfiI	GAWTC	9 cut(s)	355, 425, 734, 1139, 1396, 1519, 1660, 1784, 1852
Tru1I	TTAA	7 cut(s)	116, 341, 1115, 1635, 1665, 1875, 1902
Tru9I	TTAA	7 cut(s)	116, 341, 1115, 1635, 1665, 1875, 1902
TscAI	CASTG	1 cut(s)	1366
TseFI	GTSAC	2 cut(s)	848, 1247
TseI	GCWGC	4 cut(s)	764, 974, 977, 1426
Tsp45I	GTSAC	2 cut(s)	848, 1247
TspDTI	ATGAA	8 cut(s)	483, 873, 1043, 1100, 1182, 1367, 1408, 1436
TspGWI	ACGGA	2 cut(s)	929, 1488
TspRI	CASTG	1 cut(s)	1366
Van91I	CCANNNNNTGG	1 cut(s)	1720
Vha464I	CTTAAG	1 cut(s)	1664
VneI	GTGCAC	1 cut(s)	1797
VpaK11BI	GGWCC	3 cut(s)	97, 322, 1711
XagI	CCTNNNNNAGG	2 cut(s)	540, 1706
XapI	RAATTY	9 cut(s)	186, 402, 725, 770, 837, 1021, 1032, 1453, 1898
XbaI	TCTAGA	1 cut(s)	1889
XceI	RCATGY	1 cut(s)	1102
XcmI	CCANNNNNNNNNTGG	1 cut(s)	462
XmiI	GTMKAC	2 cut(s)	19, 449
XspI	CTAG	8 cut(s)	23, 203, 347, 1505, 1703, 1746, 1862, 1890
ZrmI	AGTACT	1 cut(s)	927
Zsp2I	ATGCAT	1 cut(s)	1295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.