Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001292

Physical Location & Seq

Genomic Coordinates Forward (+)

5763925 .. 5764770

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG055500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTTGTGGGTCCACAAAAACCATCCTTTAACCCTAGCTTTGAATCTCAGGGTTTTTGGGGATTTAGGGCTGTTCAAAGATCTGCTGGGAATTCTCCATAAGGTATTGGAGGAATCCATATGTGGACACTATCTGTGGACTCCATATGGGTACTGGTGGACTCCAAATGGGTACTATTTTTCATTCCTTGAAGGGTACCAGTGTTTAGGGAAGGAAGAGTTCTATTGGGAAAAAGAGAGGAGAAATAAAGTTGAAGAGGTAGTTGCAGCATGGAGAAGAGCAGCTGACATTTCAAAGGCTAAAATTGCAGTTGAGAGGTACCAAAATGACCAAAGGTATCAAAACTTGCATAATCAAGTAGCGGATTTGTTTTCAGAGTTCTTGAAATCAGATGTCAAATTTTTGGAATCAGGTGAGATTGAAAACATCAGTTTTGCTGCCAAATTTTGCCCTTCAATTGATTCCAAATATGATAAAGCAACCCTGATATGTGAAGTCATTGCAAAGAGAATTTTCCCACGCGTAGATTATGAAGAATACAAAGATATTTCGGAACCTCATTATGCTTACAGGGTTCGTAATCGATTGCAGAAACAAGTGCTTGTTCCTCTGCACAAAGTGCTACAGTCATCATCAGTGAACAATGCTGTTGAGAGAAAGAAGTCATGGTCCCAAAACCTTAATGCCCTATATTGTTTGGAAACTTATTGGGAAATCTACAATTATAATTACAAAATCGAATCCAAGTTGACATTCAGGGGGAGGCTAATGTACATGCTAACATGCATAATGCTAGAAACAGAACTGAGATACTATCAAGGTGCTCCAGCATTGATAGGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

281

Amino Acids

33.39

Weight (kDa)

8.36

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2828	PF11443	1 - 218	6.9e-41	Domain of unknown function (DUF2828)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001292)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04500 FvH4_2g04520 FvH4_2g04540 FvH4_2g04550
malus_domestica	MD05G1095800.v1.1 MD05G1215400.v1.1
prunus_persica	Prupe.8G139800_v2.0.a1 Prupe.8G139900_v2.0.a1 Prupe.8G140000_v2.0.a1 Prupe.8G140100_v2.0.a1 Prupe.8G140200_v2.0.a1
pyrus_communis	pycom05g09450
rosa_chinensis	RchiOBHm_Chr6g0254021 RchiOBHm_Chr6g0254031 RchiOBHm_Chr6g0254051 RchiOBHm_Chr6g0254071 RchiOBHm_Chr6g0254131
rosa_laevigata	RLG00000014941 RLG00000014945 RLG00000014947 RLG00000014948 RLG00000028713
rosa_multiflora	Rmu_co8068492.1_g000001 Rmu_co8292957.1_g000001 Rmu_sc0000010.1_g000029 Rmu_sc0001716.1_g000022 Rmu_sc0001716.1_g000026 Rmu_sc0001716.1_g000030
rosa_roxburghii	Rroxscaffold_7G00211140 Rroxscaffold_7G00211260 Rroxscaffold_7G00211290 Rroxscaffold_7G00211300
rosa_rugosa	Rorug05G0549000
rosa_samantha	Rh6AG065500 Rh6AG065600 Rh6AG065800 Rh6AG066400 Rh6BG058400 Rh6BG058600 Rh6BG059500 Rh6CG058500 Rh6CG058600 Rh6CG058700 Rh6CG058800 Rh6CG059100 Rh6CG059200 Rh6DG055300 Rh6DG055400 Rh6DG055500 Rh6DG055600 Rh6DG056000 Rh6DG056100
rosa_wichuraiana	Rw6G005770 Rw6G005790 Rw6G005830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	726
Acc65I	GGTACC	2 cut(s)	195, 318
AccB1I	GGYRCC	2 cut(s)	195, 318
AccII	CGCG	1 cut(s)	522
AciI	CCGC	1 cut(s)	362
AcsI	RAATTY	4 cut(s)	90, 398, 443, 510
AdeI	CACNNNGTG	1 cut(s)	619
AfaI	GTAC	5 cut(s)	152, 173, 197, 320, 773
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	8 cut(s)	43, 76, 191, 254, 294, 385, 422, 456
AjuI	GAANNNNNNNTTGG	2 cut(s)	737, 769
AluBI	AGCT	2 cut(s)	38, 284
AluI	AGCT	2 cut(s)	38, 284
Alw21I	GWGCWC	1 cut(s)	826
ApeKI	GCWGC	3 cut(s)	266, 281, 437
ApoI	RAATTY	4 cut(s)	90, 398, 443, 510
Asp718I	GGTACC	2 cut(s)	195, 318
AspS9I	GGNCC	2 cut(s)	10, 669
AsuHPI	GGTGA	1 cut(s)	425
AvaII	GGWCC	2 cut(s)	10, 669
BaeI	ACNNNNGTAYC	2 cut(s)	187, 220
BanI	GGYRCC	2 cut(s)	195, 318
Bbv12I	GWGCWC	1 cut(s)	826
BbvI	GCAGC	3 cut(s)	278, 293, 424
BccI	CCATC	1 cut(s)	30
BfaI	CTAG	2 cut(s)	35, 794
BfmI	CTRYAG	1 cut(s)	623
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	3 cut(s)	267, 282, 438
BlsI	GCNGC	3 cut(s)	268, 283, 439
Bme18I	GGWCC	2 cut(s)	10, 669
BmgT120I	GGNCC	2 cut(s)	10, 669
BmiI	GGNNCC	5 cut(s)	11, 197, 320, 555, 671
BpmI	CTGGAG	1 cut(s)	810
Bsa29I	ATCGAT	1 cut(s)	583
Bse1I	ACTGG	2 cut(s)	158, 199
Bse3DI	GCAATG	1 cut(s)	498
BseCI	ATCGAT	1 cut(s)	583
BseGI	GGATG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	2 cut(s)	61, 797
BseNI	ACTGG	2 cut(s)	158, 199
BseRI	GAGGAG	1 cut(s)	253
BseXI	GCAGC	3 cut(s)	278, 293, 424
BseYI	CCCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	596
Bsh1236I	CGCG	1 cut(s)	522
BshNI	GGYRCC	2 cut(s)	195, 318
BshVI	ATCGAT	1 cut(s)	583
BsiHKAI	GWGCWC	1 cut(s)	826
BslFI	GGGAC	1 cut(s)	655
BsmFI	GGGAC	1 cut(s)	655
Bsp1286I	GDGCHC	1 cut(s)	826
Bsp1407I	TGTACA	1 cut(s)	771
Bsp143I	GATC	1 cut(s)	79
BspACI	CCGC	1 cut(s)	362
BspCNI	CTCAG	2 cut(s)	60, 798
BspDI	ATCGAT	1 cut(s)	583
BspFNI	CGCG	1 cut(s)	522
BspLI	GGNNCC	5 cut(s)	11, 197, 320, 555, 671
BspQI	GCTCTTC	1 cut(s)	271
BspT107I	GGYRCC	2 cut(s)	195, 318
BsrDI	GCAATG	1 cut(s)	498
BsrGI	TGTACA	1 cut(s)	771
BsrI	ACTGG	2 cut(s)	158, 199
BssMI	GATC	1 cut(s)	79
Bst4CI	ACNGT	1 cut(s)	627
Bst6I	CTCTTC	3 cut(s)	210, 249, 271
BstAPI	GCANNNNNTGC	1 cut(s)	619
BstAUI	TGTACA	1 cut(s)	771
BstDEI	CTNAG	2 cut(s)	47, 806
BstF5I	GGATG	1 cut(s)	22
BstFNI	CGCG	1 cut(s)	522
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 619
BstNSI	RCATGY	2 cut(s)	778, 786
BstSFI	CTRYAG	1 cut(s)	623
BstUI	CGCG	1 cut(s)	522
BstV1I	GCAGC	3 cut(s)	278, 293, 424
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
Bsu15I	ATCGAT	1 cut(s)	583
BsuTUI	ATCGAT	1 cut(s)	583
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	206, 642
Cfr13I	GGNCC	2 cut(s)	10, 669
ClaI	ATCGAT	1 cut(s)	583
Csp6I	GTAC	5 cut(s)	151, 172, 196, 319, 772
CviAII	CATG	4 cut(s)	270, 666, 775, 783
CviJI	RGCY	5 cut(s)	38, 70, 284, 299, 766
CviKI_1	RGCY	5 cut(s)	38, 70, 284, 299, 766
CviQI	GTAC	5 cut(s)	151, 172, 196, 319, 772
DdeI	CTNAG	2 cut(s)	47, 806
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
DraIII	CACNNNGTG	1 cut(s)	619
Eam1104I	CTCTTC	3 cut(s)	210, 249, 271
EarI	CTCTTC	3 cut(s)	210, 249, 271
Eco47I	GGWCC	2 cut(s)	10, 669
EcoRI	GAATTC	1 cut(s)	90
EcoT22I	ATGCAT	1 cut(s)	788
FaeI	CATG	4 cut(s)	273, 669, 778, 786
FaqI	GGGAC	1 cut(s)	655
FatI	CATG	4 cut(s)	269, 665, 774, 782
FauNDI	CATATG	2 cut(s)	119, 145
Fnu4HI	GCNGC	3 cut(s)	267, 282, 438
FokI	GGATG	1 cut(s)	9
Fsp4HI	GCNGC	3 cut(s)	267, 282, 438
FspBI	CTAG	2 cut(s)	35, 794
GluI	GCNGC	3 cut(s)	267, 282, 438
GsaI	CCCAGC	1 cut(s)	89
GsuI	CTGGAG	1 cut(s)	810
Hin1II	CATG	4 cut(s)	273, 669, 778, 786
HincII	GTYRAC	1 cut(s)	750
HindII	GTYRAC	1 cut(s)	750
HinfI	GANTC	7 cut(s)	43, 113, 139, 160, 407, 461, 740
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	6 cut(s)	13, 125, 138, 159, 640, 750
Hpy188I	TCNGA	3 cut(s)	376, 391, 553
Hpy188III	TCNNGA	1 cut(s)	382
Hpy8I	GTNNAC	6 cut(s)	13, 125, 138, 159, 640, 750
HpyAV	CCTTC	3 cut(s)	185, 205, 462
HpyCH4III	ACNGT	1 cut(s)	627
HpyCH4V	TGCA	7 cut(s)	266, 308, 349, 503, 589, 613, 786
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 619
HpyF3I	CTNAG	2 cut(s)	47, 806
Hsp92II	CATG	4 cut(s)	273, 669, 778, 786
KpnI	GGTACC	2 cut(s)	199, 322
Kzo9I	GATC	1 cut(s)	79
LguI	GCTCTTC	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	829
LpnPI	CCDG	9 cut(s)	34, 71, 139, 212, 396, 497, 556, 742, 840
Lsp1109I	GCAGC	3 cut(s)	278, 293, 424
MaeI	CTAG	2 cut(s)	35, 794
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	4 cut(s)	227, 266, 288, 545
MfeI	CAATTG	1 cut(s)	456
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	826
MluCI	AATT	8 cut(s)	90, 303, 398, 443, 456, 510, 721, 727
MluI	ACGCGT	1 cut(s)	520
MlyI	GAGTC	2 cut(s)	133, 154
MnlI	CCTC	7 cut(s)	103, 231, 250, 309, 567, 618, 756
Mph1103I	ATGCAT	1 cut(s)	788
MseI	TTAA	3 cut(s)	29, 681, 844
MspA1I	CMGCKG	1 cut(s)	284
MunI	CAATTG	1 cut(s)	456
MvnI	CGCG	1 cut(s)	522
MwoI	GCNNNNNNNGC	2 cut(s)	305, 619
NdeI	CATATG	2 cut(s)	119, 145
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	4 cut(s)	273, 669, 778, 786
NlaIV	GGNNCC	5 cut(s)	11, 197, 320, 555, 671
NsiI	ATGCAT	1 cut(s)	788
NspI	RCATGY	2 cut(s)	778, 786
PciSI	GCTCTTC	1 cut(s)	271
PfeI	GAWTC	5 cut(s)	43, 113, 407, 461, 740
PkrI	GCNGC	3 cut(s)	268, 283, 439
PleI	GAGTC	2 cut(s)	133, 154
PpsI	GAGTC	2 cut(s)	133, 154
PsiI	TTATAA	1 cut(s)	726
PspFI	CCCAGC	1 cut(s)	85
PspN4I	GGNNCC	5 cut(s)	11, 197, 320, 555, 671
PspPI	GGNCC	2 cut(s)	10, 669
PsuI	RGATCY	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	5 cut(s)	152, 173, 197, 320, 773
RsaNI	GTAC	5 cut(s)	151, 172, 196, 319, 772
SapI	GCTCTTC	1 cut(s)	271
SaqAI	TTAA	3 cut(s)	29, 681, 844
SatI	GCNGC	3 cut(s)	267, 282, 438
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	2 cut(s)	10, 669
SchI	GAGTC	2 cut(s)	133, 154
SduI	GDGCHC	1 cut(s)	826
SfcI	CTRYAG	1 cut(s)	623
SinI	GGWCC	2 cut(s)	10, 669
Sse9I	AATT	8 cut(s)	90, 303, 398, 443, 456, 510, 721, 727
SsiI	CCGC	1 cut(s)	362
SspMI	CTAG	2 cut(s)	35, 794
TaaI	ACNGT	1 cut(s)	627
TaqI	TCGA	2 cut(s)	583, 738
TasI	AATT	8 cut(s)	90, 303, 398, 443, 456, 510, 721, 727
TatI	WGTACW	1 cut(s)	771
TfiI	GAWTC	5 cut(s)	43, 113, 407, 461, 740
Tru1I	TTAA	3 cut(s)	29, 681, 844
Tru9I	TTAA	3 cut(s)	29, 681, 844
TscAI	CASTG	2 cut(s)	206, 642
TseI	GCWGC	3 cut(s)	266, 281, 437
TspDTI	ATGAA	2 cut(s)	171, 546
TspRI	CASTG	2 cut(s)	206, 642
VpaK11BI	GGWCC	2 cut(s)	10, 669
XapI	RAATTY	4 cut(s)	90, 398, 443, 510
XceI	RCATGY	2 cut(s)	778, 786
XcmI	CCANNNNNNNNNTGG	1 cut(s)	150
XspI	CTAG	2 cut(s)	35, 794
Zsp2I	ATGCAT	1 cut(s)	788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.