Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001292

Physical Location & Seq

Genomic Coordinates Reverse (-)

59836548 .. 59837981

Gene Structure 1434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014945

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGCTCCTGCTTTATCTCTACTAGGGCCACCGGCTCTCCGCCAGGCTAAACCCACTTTTCACCATCCCTCCACCCCTATCTCAAGATTCTCAACCTATCAACACCTTGCCCATCCCTCCACCCGTATCTCAAGATTCTCAACCTATCAACACCTTGCAGAGGGTCAATACCTCGAGTCTTCTCTACCACCCTTGGACCCCTGCACCAAGTTTCTCTTAGAAGCCGTCACACACCCCAAGAGCCGTTCCGATTACAACTACGACTATGACTACGACGAGCAACCAAAGGATCTGGCTCACTATGAAGGAGAGGCGTGGAAGCATGACCCCCTCACCACTCTCAAGCTCATATGTAGTCTTCGAATGATGGGGAAGCTCAACGAAGATCGGTTTTACAAAGTCATGTTGTGGGTGCACAATAACCACCCTCTAACCATGTCTTTGAATGTCATGCAGGCTTTTGGGGGTTTAGGCCGGGTTTTGGAGGATTCCATAGAAAAAACAAACAACGAATACTCGCGGTGGAATTATGATTATTCTCGGGAAGAAGAGACATCAACAAATAAGGAAGGTATTGATAATAATTCTAGGGCTAAAACCGCCGTTGAGAGAGCTGAGCGAAACTCCATGAGAGGGACATACAAGGAGACAGATTGTATTTCACTGGGGTTATTGATTTCAGAGCTGAGCGAAAATCCATGGAAAGGAAAGGTTTTTTCATTCAATGAAACTCCAACACTTCAAAAGATCGAAGGAGACGATCTTCAATCCAATTGTGAGTTCATGAGACACAACATAGAGTGTGGAGACAAAGTTGATTTCTTCAAGATTTACAACCAAGTCTTGCAAATTGCCATTGAACAAAAGCTAAGCAACGAGCAGTTGCCCAAGAGGATTTTTGTGTTCACTGACAGGGATTTCGAGGCGGCTTCCAAGAACAATTGGGCAGAAGATTATAAAGAGGCATGGACTAATTACAGAAGAAGAGGGTACGCAAATGTACCACTGGTGGAGGCTAGGACTCAATACAAAAAGAAAGGGTACAAAACTCTGCCACACATTTTGTTTTGGAATCTTAAGAATTCCATTGCTGAGCCAGAGATAATTTGTAGCCCTGTTAATAACAAATGCAGGGGGCTGATTATAACTGGGTTGTCGAACAGTTTGATCAGTATGTTCTTAGTGGGAGAGTCGGATTCGAGAACATATGCACCTCATGTCCAGGCACCTTATGGTATCGGTTCGCTGTCGGTACTGAAATTTCTTCCCAAAGCTGAGGATGTGATGAAATCTGTATTTTTGAGAGATGAATTATTAAAGAGCCTCCTTATATTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

447

Amino Acids

51.38

Weight (kDa)

6.69

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2828	PF11443	90 - 300	7.9e-15	Domain of unknown function (DUF2828)
DUF7788	PF25043	211 - 335	3.7e-29	Domain of unknown function (DUF7788)
DUF7788	PF25043	341 - 397	2.4e-06	Domain of unknown function (DUF7788)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001292)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04500 FvH4_2g04520 FvH4_2g04540 FvH4_2g04550
malus_domestica	MD05G1095800.v1.1 MD05G1215400.v1.1
prunus_persica	Prupe.8G139800_v2.0.a1 Prupe.8G139900_v2.0.a1 Prupe.8G140000_v2.0.a1 Prupe.8G140100_v2.0.a1 Prupe.8G140200_v2.0.a1
pyrus_communis	pycom05g09450
rosa_chinensis	RchiOBHm_Chr6g0254021 RchiOBHm_Chr6g0254031 RchiOBHm_Chr6g0254051 RchiOBHm_Chr6g0254071 RchiOBHm_Chr6g0254131
rosa_laevigata	RLG00000014941 RLG00000014945 RLG00000014947 RLG00000014948 RLG00000028713
rosa_multiflora	Rmu_co8068492.1_g000001 Rmu_co8292957.1_g000001 Rmu_sc0000010.1_g000029 Rmu_sc0001716.1_g000022 Rmu_sc0001716.1_g000026 Rmu_sc0001716.1_g000030
rosa_roxburghii	Rroxscaffold_7G00211140 Rroxscaffold_7G00211260 Rroxscaffold_7G00211290 Rroxscaffold_7G00211300
rosa_rugosa	Rorug05G0549000
rosa_samantha	Rh6AG065500 Rh6AG065600 Rh6AG065800 Rh6AG066400 Rh6BG058400 Rh6BG058600 Rh6BG059500 Rh6CG058500 Rh6CG058600 Rh6CG058700 Rh6CG058800 Rh6CG059100 Rh6CG059200 Rh6DG055300 Rh6DG055400 Rh6DG055500 Rh6DG055600 Rh6DG056000 Rh6DG056100
rosa_wichuraiana	Rw6G005770 Rw6G005790 Rw6G005830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	957, 1145
AccB1I	GGYRCC	1 cut(s)	1225
AccII	CGCG	1 cut(s)	520
AciI	CCGC	4 cut(s)	40, 520, 600, 926
AclWI	GGATC	1 cut(s)	297
AcsI	RAATTY	2 cut(s)	1081, 1259
AfaI	GTAC	4 cut(s)	992, 1002, 1043, 1254
AfiI	CCNNNNNNNGG	5 cut(s)	160, 481, 633, 704, 1333
AflII	CTTAAG	1 cut(s)	1076
AgsI	TTSAA	6 cut(s)	445, 724, 743, 767, 826, 860
AjnI	CCWGG	2 cut(s)	42, 1221
AjuI	GAANNNNNNNTTGG	2 cut(s)	764, 796
AluBI	AGCT	6 cut(s)	346, 376, 614, 685, 868, 1274
AluI	AGCT	6 cut(s)	346, 376, 614, 685, 868, 1274
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	5 cut(s)	545, 641, 750, 781, 801
Alw44I	GTGCAC	1 cut(s)	413
AlwI	GGATC	1 cut(s)	297
Ama87I	CYCGRG	2 cut(s)	173, 540
AoxI	GGCC	2 cut(s)	26, 472
ApaLI	GTGCAC	1 cut(s)	413
ApoI	RAATTY	2 cut(s)	1081, 1259
ArsI	GACNNNNNNTTYG	2 cut(s)	902, 934
AspS9I	GGNCC	2 cut(s)	26, 196
AsuC2I	CCSGG	1 cut(s)	476
AsuHPI	GGTGA	2 cut(s)	53, 325
AsuII	TTCGAA	1 cut(s)	361
AvaI	CYCGRG	2 cut(s)	173, 540
AvaII	GGWCC	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	417
BanI	GGYRCC	1 cut(s)	1225
BbsI	GAAGAC	2 cut(s)	171, 350
Bbv12I	GWGCWC	1 cut(s)	417
BbvCI	CCTCAGC	1 cut(s)	1275
BccI	CCATC	3 cut(s)	72, 120, 361
BceAI	ACGGC	3 cut(s)	209, 228, 587
BciT130I	CCWGG	2 cut(s)	44, 1223
BclI	TGATCA	1 cut(s)	1167
BcnI	CCSGG	1 cut(s)	476
BcoDI	GTCTC	5 cut(s)	545, 641, 750, 781, 801
BfaI	CTAG	3 cut(s)	23, 588, 1017
BfrI	CTTAAG	1 cut(s)	1076
BisI	GCNGC	1 cut(s)	927
BlpI	GCTNAGC	4 cut(s)	615, 686, 869, 1092
BlsI	GCNGC	1 cut(s)	928
Bme1390I	CCNGG	3 cut(s)	44, 476, 1223
Bme18I	GGWCC	1 cut(s)	196
BmeT110I	CYCGRG	2 cut(s)	173, 540
BmgT120I	GGNCC	2 cut(s)	26, 196
BmiI	GGNNCC	3 cut(s)	6, 198, 1227
BmrFI	CCNGG	3 cut(s)	44, 476, 1223
BmrI	ACTGGG	2 cut(s)	674, 1158
BmuI	ACTGGG	2 cut(s)	674, 1158
BpiI	GAAGAC	2 cut(s)	171, 350
BplI	GAGNNNNNCTC	2 cut(s)	608, 640
Bpu10I	CCTNAGC	1 cut(s)	1275
Bpu1102I	GCTNAGC	4 cut(s)	615, 686, 869, 1092
Bpu14I	TTCGAA	1 cut(s)	361
BpuEI	CTTGAG	3 cut(s)	67, 115, 326
BpuMI	CCSGG	1 cut(s)	476
BsaJI	CCNNGG	2 cut(s)	192, 698
BsaXI	ACNNNNNCTCC	6 cut(s)	21, 51, 53, 83, 798, 828
Bsc4I	CCNNNNNNNGG	5 cut(s)	160, 481, 633, 704, 1333
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	3 cut(s)	669, 1011, 1153
Bse3DI	GCAATG	1 cut(s)	1086
BseBI	CCWGG	2 cut(s)	44, 1223
BseDI	CCNNGG	2 cut(s)	192, 698
BseGI	GGATG	3 cut(s)	64, 112, 1285
BseLI	CCNNNNNNNGG	5 cut(s)	160, 481, 633, 704, 1333
BseMI	GCAATG	1 cut(s)	1086
BseMII	CTCAG	4 cut(s)	606, 677, 1083, 1266
BseNI	ACTGG	3 cut(s)	669, 1011, 1153
BseSI	GKGCMC	1 cut(s)	417
BsgI	GTGCAG	1 cut(s)	187
Bsh1236I	CGCG	1 cut(s)	520
BshFI	GGCC	2 cut(s)	28, 474
BshNI	GGYRCC	1 cut(s)	1225
BsiHKAI	GWGCWC	1 cut(s)	417
BsiHKCI	CYCGRG	2 cut(s)	173, 540
BsiSI	CCGG	2 cut(s)	32, 475
BslFI	GGGAC	1 cut(s)	649
BslI	CCNNNNNNNGG	5 cut(s)	160, 481, 633, 704, 1333
BsmAI	GTCTC	5 cut(s)	545, 641, 750, 781, 801
BsmBI	CGTCTC	1 cut(s)	750
BsmFI	GGGAC	1 cut(s)	649
BsnI	GGCC	2 cut(s)	28, 474
BsoBI	CYCGRG	2 cut(s)	173, 540
Bsp119I	TTCGAA	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp143I	GATC	5 cut(s)	289, 385, 747, 760, 1167
Bsp1720I	GCTNAGC	4 cut(s)	615, 686, 869, 1092
Bsp19I	CCATGG	1 cut(s)	698
BspACI	CCGC	4 cut(s)	40, 520, 600, 926
BspANI	GGCC	2 cut(s)	28, 474
BspCNI	CTCAG	4 cut(s)	607, 678, 1084, 1267
BspFNI	CGCG	1 cut(s)	520
BspHI	TCATGA	1 cut(s)	783
BspLI	GGNNCC	3 cut(s)	6, 198, 1227
BspPI	GGATC	1 cut(s)	297
BspT104I	TTCGAA	1 cut(s)	361
BspT107I	GGYRCC	1 cut(s)	1225
BspTI	CTTAAG	1 cut(s)	1076
BsrDI	GCAATG	1 cut(s)	1086
BsrFI	RCCGGY	1 cut(s)	31
BsrI	ACTGG	3 cut(s)	669, 1011, 1153
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	192, 698
BssMI	GATC	5 cut(s)	289, 385, 747, 760, 1167
BssT1I	CCWWGG	2 cut(s)	192, 698
Bst2UI	CCWGG	2 cut(s)	44, 1223
Bst4CI	ACNGT	1 cut(s)	1163
Bst6I	CTCTTC	2 cut(s)	543, 979
BstAFI	CTTAAG	1 cut(s)	1076
BstBI	TTCGAA	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	456
BstDEI	CTNAG	7 cut(s)	217, 615, 686, 869, 1092, 1180, 1275
BstDSI	CCRYGG	1 cut(s)	698
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	3 cut(s)	64, 112, 1285
BstFNI	CGCG	1 cut(s)	520
BstKTI	GATC	5 cut(s)	292, 388, 750, 763, 1170
BstMAI	GTCTC	5 cut(s)	545, 641, 750, 781, 801
BstMBI	GATC	5 cut(s)	289, 385, 747, 760, 1167
BstMWI	GCNNNNNNNGC	1 cut(s)	599
BstNI	CCWGG	2 cut(s)	44, 1223
BstSCI	CCNGG	3 cut(s)	42, 474, 1221
BstSLI	GKGCMC	1 cut(s)	417
BstUI	CGCG	1 cut(s)	520
BstV2I	GAAGAC	2 cut(s)	171, 350
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	28, 474
BtgI	CCRYGG	1 cut(s)	698
BtsCI	GGATG	3 cut(s)	64, 112, 1285
BtsIMutI	CAGTG	3 cut(s)	662, 906, 1004
Cac8I	GCNNGC	1 cut(s)	456
CciI	TCATGA	1 cut(s)	783
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	2 cut(s)	26, 196
Csp6I	GTAC	4 cut(s)	991, 1001, 1042, 1253
CspCI	CAANNNNNGTGG	2 cut(s)	1044, 1079
CviAII	CATG	9 cut(s)	323, 403, 436, 451, 628, 699, 784, 966, 1217
CviQI	GTAC	4 cut(s)	991, 1001, 1042, 1253
DdeI	CTNAG	7 cut(s)	217, 615, 686, 869, 1092, 1180, 1275
DpnI	GATC	5 cut(s)	291, 387, 749, 762, 1169
DpnII	GATC	5 cut(s)	289, 385, 747, 760, 1167
Eam1104I	CTCTTC	2 cut(s)	543, 979
EarI	CTCTTC	2 cut(s)	543, 979
EciI	GGCGGA	1 cut(s)	29
Eco130I	CCWWGG	2 cut(s)	192, 698
Eco47I	GGWCC	1 cut(s)	196
Eco88I	CYCGRG	2 cut(s)	173, 540
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoRI	GAATTC	1 cut(s)	1081
EcoRII	CCWGG	2 cut(s)	42, 1221
EcoT14I	CCWWGG	2 cut(s)	192, 698
ErhI	CCWWGG	2 cut(s)	192, 698
Esp3I	CGTCTC	1 cut(s)	750
FaeI	CATG	9 cut(s)	326, 406, 439, 454, 631, 702, 787, 969, 1220
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FaqI	GGGAC	1 cut(s)	649
FatI	CATG	9 cut(s)	322, 402, 435, 450, 627, 698, 783, 965, 1216
FauNDI	CATATG	2 cut(s)	350, 1207
FbaI	TGATCA	1 cut(s)	1167
Fnu4HI	GCNGC	1 cut(s)	927
FokI	GGATG	3 cut(s)	51, 99, 1292
Fsp4HI	GCNGC	1 cut(s)	927
FspBI	CTAG	3 cut(s)	23, 588, 1017
GluI	GCNGC	1 cut(s)	927
HaeIII	GGCC	2 cut(s)	28, 474
HapII	CCGG	2 cut(s)	32, 475
Hin1II	CATG	9 cut(s)	326, 406, 439, 454, 631, 702, 787, 969, 1220
HinfI	GANTC	8 cut(s)	87, 135, 176, 488, 1021, 1072, 1190, 1196
HpaII	CCGG	2 cut(s)	32, 475
HphI	GGTGA	2 cut(s)	53, 325
Hpy166II	GTNNAC	2 cut(s)	415, 906
Hpy188I	TCNGA	3 cut(s)	250, 682, 1195
Hpy188III	TCNNGA	6 cut(s)	84, 132, 542, 784, 826, 1200
Hpy8I	GTNNAC	2 cut(s)	415, 906
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	3 cut(s)	299, 563, 746
HpyCH4III	ACNGT	1 cut(s)	1163
HpyCH4V	TGCA	7 cut(s)	158, 204, 415, 454, 847, 1131, 1211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	599
HpyF3I	CTNAG	7 cut(s)	217, 615, 686, 869, 1092, 1180, 1275
Hsp92II	CATG	9 cut(s)	326, 406, 439, 454, 631, 702, 787, 969, 1220
Ksp22I	TGATCA	1 cut(s)	1167
Kzo9I	GATC	5 cut(s)	289, 385, 747, 760, 1167
LmnI	GCTCC	1 cut(s)	10
MaeI	CTAG	3 cut(s)	23, 588, 1017
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	5 cut(s)	291, 387, 749, 762, 1169
MboI	GATC	5 cut(s)	289, 385, 747, 760, 1167
MfeI	CAATTG	2 cut(s)	772, 940
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	417
MlyI	GAGTC	3 cut(s)	185, 1015, 1199
MmeI	TCCRAC	2 cut(s)	758, 1173
MseI	TTAA	3 cut(s)	1077, 1119, 1316
MspCI	CTTAAG	1 cut(s)	1076
MspI	CCGG	2 cut(s)	32, 475
MspR9I	CCNGG	3 cut(s)	44, 476, 1223
MunI	CAATTG	2 cut(s)	772, 940
MvaI	CCWGG	2 cut(s)	44, 1223
MvnI	CGCG	1 cut(s)	520
MwoI	GCNNNNNNNGC	1 cut(s)	599
NciI	CCSGG	1 cut(s)	476
NcoI	CCATGG	1 cut(s)	698
NdeI	CATATG	2 cut(s)	350, 1207
NdeII	GATC	5 cut(s)	289, 385, 747, 760, 1167
NlaIII	CATG	9 cut(s)	326, 406, 439, 454, 631, 702, 787, 969, 1220
NlaIV	GGNNCC	3 cut(s)	6, 198, 1227
NmuCI	GTSAC	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	361
PaeR7I	CTCGAG	1 cut(s)	173
PagI	TCATGA	1 cut(s)	783
PcsI	WCGNNNNNNNCGW	1 cut(s)	756
PfeI	GAWTC	5 cut(s)	87, 135, 488, 1072, 1196
PkrI	GCNGC	1 cut(s)	928
PleI	GAGTC	3 cut(s)	184, 1015, 1198
PpsI	GAGTC	3 cut(s)	184, 1015, 1198
PsiI	TTATAA	2 cut(s)	957, 1145
Psp6I	CCWGG	2 cut(s)	42, 1221
PspGI	CCWGG	2 cut(s)	42, 1221
PspN4I	GGNNCC	3 cut(s)	6, 198, 1227
PspPI	GGNCC	2 cut(s)	26, 196
PspXI	VCTCGAGB	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	4 cut(s)	992, 1002, 1043, 1254
RsaNI	GTAC	4 cut(s)	991, 1001, 1042, 1253
SaqAI	TTAA	3 cut(s)	1077, 1119, 1316
SatI	GCNGC	1 cut(s)	927
Sau3AI	GATC	5 cut(s)	289, 385, 747, 760, 1167
Sau96I	GGNCC	2 cut(s)	26, 196
SchI	GAGTC	3 cut(s)	185, 1015, 1199
ScrFI	CCNGG	3 cut(s)	44, 476, 1223
SduI	GDGCHC	1 cut(s)	417
Sfr274I	CTCGAG	1 cut(s)	173
SfuI	TTCGAA	1 cut(s)	361
SinI	GGWCC	1 cut(s)	196
SlaI	CTCGAG	1 cut(s)	173
SmlI	CTYRAG	5 cut(s)	82, 130, 173, 341, 1076
SmoI	CTYRAG	5 cut(s)	82, 130, 173, 341, 1076
SsiI	CCGC	4 cut(s)	40, 520, 600, 926
SspMI	CTAG	3 cut(s)	23, 588, 1017
StyD4I	CCNGG	3 cut(s)	42, 474, 1221
StyI	CCWWGG	2 cut(s)	192, 698
TaaI	ACNGT	1 cut(s)	1163
TaqI	TCGA	6 cut(s)	174, 361, 750, 921, 1157, 1199
TauI	GCSGC	1 cut(s)	929
TfiI	GAWTC	5 cut(s)	87, 135, 488, 1072, 1196
Tru1I	TTAA	3 cut(s)	1077, 1119, 1316
Tru9I	TTAA	3 cut(s)	1077, 1119, 1316
TscAI	CASTG	3 cut(s)	669, 913, 1011
TseFI	GTSAC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	6 cut(s)	318, 708, 741, 772, 1301, 1323
TspRI	CASTG	3 cut(s)	669, 913, 1011
Vha464I	CTTAAG	1 cut(s)	1076
VneI	GTGCAC	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	196
XagI	CCTNNNNNAGG	1 cut(s)	158
XapI	RAATTY	2 cut(s)	1081, 1259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1229
XhoI	CTCGAG	1 cut(s)	173
XspI	CTAG	3 cut(s)	23, 588, 1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.