Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001292

Physical Location & Seq

Genomic Coordinates Forward (+)

9464212 .. 9466035

Gene Structure 1824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG059500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGCTCCTGCATTATGCCTAGTAGGTCCACCAGAGCTGCACCAGCCCAAAAAACCTCCCACCACTCCTATCTCAACCTACGAAGACCTCCCACTTTGTAAAGATCTCAAGTCTTCACTCCCACCCTTAAACCCTCTCCTTGAATTTTTTTTCAAGGCCGTGTCACACACTGAAACGCCGCCAAAGACTCCCAAGTTCGGATATTATTGGCTGTCGGCTCCACCAAAGCCGAAGGAGCTGACCGACTATGAAGAAGAGGCCTGGAAGCTTGACTCTCTCACCACTCTCAAGACGATAGTTTGTCTTAGAATGATGGAGAAGCCTAACAAAGAAGCGTTCTACAAATCCCTCTTGTGGGTCCACAAAAACCACCCAAAAACCCTAGCTCTGAATGTCATGGTTTTCGGGGCTTTAGGTTGGTTCGATGATCTGTTGGAAATTCTCAAAAGGGTTTTGGAGGACTCCATTCATAGACTTGCAAACCCAGAAAAGAAGGATGAGCTAATTATATCAAACTACAGGAGGAGGATATCAAACTACAGGAGCAATCGTTTGGGATACGACTATGAGGAAGAAAGTGATGACGATGATGATGACGAAAAGAAGACGAAAGCTGCCGCAGAAATAGCACCGAAAGATGACATTGGGAAGGCTAGAATTGCAGTTGAGAGGTACCAAAACGACTCAGATTATCGATTCTTACACGATCGGATATCAGACTTGTTTGCAGAGGTGTTGAAATCAGATCTGAGGTTCTTGTTATCAGGTGCAATTAAATCGATAAGCTTTGCTTCCAAGTTTTGTCCTTCAATTGATTCCCCTTACGACTATGAAACCCTAATCTGTGAAAGCATAGCAAAGAAAATGTTCCCACGCAATAATCATATAGAGTACAAATATGTTGAAGACCCTTATTACACTTACAGGATTGCACTCACAGAGAAGCTAAGCAAGGAGCAAATGCCTAAAAGGATTTTCGTCTTCACCTATAGTGATTTTGTCGCGGCCTCCAAAAACAACTGGGATGAAGAATACAGGGAAGCATGGGCTAGTTACAGAAAGAGAGGGTTTTCAACTGTGCCGCAAATGGTGTTTTGGAATCTTAGGGACCCGGTTGCGGAGCCGGAGGTATTTGGGAGCCCGGTGAAGAACCAAAATGGGGGGATGATCATGTCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

393

Amino Acids

45.68

Weight (kDa)

6.08

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2828	PF11443	75 - 310	1.1e-47	Domain of unknown function (DUF2828)
DUF7788	PF25043	309 - 376	2.1e-13	Domain of unknown function (DUF7788)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001292)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04500 FvH4_2g04520 FvH4_2g04540 FvH4_2g04550
malus_domestica	MD05G1095800.v1.1 MD05G1215400.v1.1
prunus_persica	Prupe.8G139800_v2.0.a1 Prupe.8G139900_v2.0.a1 Prupe.8G140000_v2.0.a1 Prupe.8G140100_v2.0.a1 Prupe.8G140200_v2.0.a1
pyrus_communis	pycom05g09450
rosa_chinensis	RchiOBHm_Chr6g0254021 RchiOBHm_Chr6g0254031 RchiOBHm_Chr6g0254051 RchiOBHm_Chr6g0254071 RchiOBHm_Chr6g0254131
rosa_laevigata	RLG00000014941 RLG00000014945 RLG00000014947 RLG00000014948 RLG00000028713
rosa_multiflora	Rmu_co8068492.1_g000001 Rmu_co8292957.1_g000001 Rmu_sc0000010.1_g000029 Rmu_sc0001716.1_g000022 Rmu_sc0001716.1_g000026 Rmu_sc0001716.1_g000030
rosa_roxburghii	Rroxscaffold_7G00211140 Rroxscaffold_7G00211260 Rroxscaffold_7G00211290 Rroxscaffold_7G00211300
rosa_rugosa	Rorug05G0549000
rosa_samantha	Rh6AG065500 Rh6AG065600 Rh6AG065800 Rh6AG066400 Rh6BG058400 Rh6BG058600 Rh6BG059500 Rh6CG058500 Rh6CG058600 Rh6CG058700 Rh6CG058800 Rh6CG059100 Rh6CG059200 Rh6DG055300 Rh6DG055400 Rh6DG055500 Rh6DG055600 Rh6DG056000 Rh6DG056100
rosa_wichuraiana	Rw6G005770 Rw6G005790 Rw6G005830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	672
AccB1I	GGYRCC	1 cut(s)	672
AccII	CGCG	1 cut(s)	1004
AciI	CCGC	5 cut(s)	179, 618, 1004, 1082, 1118
AcsI	RAATTY	2 cut(s)	143, 438
AfaI	GTAC	2 cut(s)	674, 893
AfiI	CCNNNNNNNGG	5 cut(s)	197, 354, 355, 1117, 1159
AgsI	TTSAA	6 cut(s)	143, 154, 739, 810, 905, 1074
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	8 cut(s)	37, 238, 268, 386, 502, 614, 786, 946
AluI	AGCT	8 cut(s)	37, 238, 268, 386, 502, 614, 786, 946
AoxI	GGCC	3 cut(s)	156, 258, 1005
ApeKI	GCWGC	2 cut(s)	37, 614
ApoI	RAATTY	2 cut(s)	143, 438
Asp700I	GAANNNNTTC	1 cut(s)	866
Asp718I	GGTACC	1 cut(s)	672
AspS9I	GGNCC	3 cut(s)	26, 358, 1108
AsuC2I	CCSGG	2 cut(s)	1112, 1142
AsuHPI	GGTGA	3 cut(s)	271, 976, 1156
AvaII	GGWCC	3 cut(s)	26, 358, 1108
BanI	GGYRCC	1 cut(s)	672
BanII	GRGCYC	1 cut(s)	1142
BbsI	GAAGAC	5 cut(s)	90, 105, 611, 912, 973
BbvI	GCAGC	2 cut(s)	24, 601
BccI	CCATC	1 cut(s)	307
BceAI	ACGGC	1 cut(s)	143
BcgI	CGANNNNNNTGC	2 cut(s)	759, 793
BciT130I	CCWGG	1 cut(s)	262
BciVI	GTATCC	1 cut(s)	551
BclI	TGATCA	1 cut(s)	1167
BcnI	CCSGG	2 cut(s)	1112, 1142
BfaI	CTAG	4 cut(s)	20, 383, 654, 1050
BfmI	CTRYAG	3 cut(s)	517, 538, 988
BfuI	GTATCC	1 cut(s)	551
BglII	AGATCT	2 cut(s)	103, 745
BisI	GCNGC	6 cut(s)	38, 179, 615, 618, 1005, 1082
BlpI	GCTNAGC	1 cut(s)	947
BlsI	GCNGC	6 cut(s)	39, 180, 616, 619, 1006, 1083
Bme1390I	CCNGG	3 cut(s)	262, 1112, 1142
Bme18I	GGWCC	3 cut(s)	26, 358, 1108
BmgT120I	GGNCC	3 cut(s)	26, 358, 1108
BmiI	GGNNCC	8 cut(s)	6, 219, 359, 674, 1109, 1110, 1122, 1139
BmrFI	CCNGG	3 cut(s)	262, 1112, 1142
BmrI	ACTGGG	1 cut(s)	1030
BmuI	ACTGGG	1 cut(s)	1030
BpiI	GAAGAC	5 cut(s)	90, 105, 611, 912, 973
Bpu1102I	GCTNAGC	1 cut(s)	947
BpuEI	CTTGAG	2 cut(s)	92, 272
BpuMI	CCSGG	2 cut(s)	1112, 1142
Bsa29I	ATCGAT	2 cut(s)	694, 779
BsaXI	ACNNNNNCTCC	2 cut(s)	535, 565
Bsc4I	CCNNNNNNNGG	5 cut(s)	197, 354, 355, 1117, 1159
Bse1I	ACTGG	1 cut(s)	1025
BseBI	CCWGG	1 cut(s)	262
BseCI	ATCGAT	2 cut(s)	694, 779
BseGI	GGATG	3 cut(s)	502, 1030, 1170
BseLI	CCNNNNNNNGG	5 cut(s)	197, 354, 355, 1117, 1159
BseMII	CTCAG	2 cut(s)	699, 740
BseNI	ACTGG	1 cut(s)	1025
BseRI	GAGGAG	1 cut(s)	538
BseXI	GCAGC	2 cut(s)	24, 601
BsgI	GTGCAG	1 cut(s)	23
Bsh1236I	CGCG	1 cut(s)	1004
Bsh1285I	CGRYCG	1 cut(s)	709
BshFI	GGCC	3 cut(s)	158, 260, 1007
BshNI	GGYRCC	1 cut(s)	672
BshVI	ATCGAT	2 cut(s)	694, 779
BsiEI	CGRYCG	1 cut(s)	709
BsiSI	CCGG	3 cut(s)	1112, 1124, 1142
BslFI	GGGAC	1 cut(s)	1121
BslI	CCNNNNNNNGG	5 cut(s)	197, 354, 355, 1117, 1159
BsmFI	GGGAC	1 cut(s)	1121
BsnI	GGCC	3 cut(s)	158, 260, 1007
Bsp1286I	GDGCHC	1 cut(s)	1142
Bsp143I	GATC	5 cut(s)	103, 427, 706, 745, 1167
Bsp1720I	GCTNAGC	1 cut(s)	947
BspACI	CCGC	5 cut(s)	179, 618, 1004, 1082, 1118
BspANI	GGCC	3 cut(s)	158, 260, 1007
BspCNI	CTCAG	2 cut(s)	698, 741
BspDI	ATCGAT	2 cut(s)	694, 779
BspFNI	CGCG	1 cut(s)	1004
BspLI	GGNNCC	8 cut(s)	6, 219, 359, 674, 1109, 1110, 1122, 1139
BspT107I	GGYRCC	1 cut(s)	672
BsrI	ACTGG	1 cut(s)	1025
BssMI	GATC	5 cut(s)	103, 427, 706, 745, 1167
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	1078
Bst6I	CTCTTC	1 cut(s)	249
BstDEI	CTNAG	5 cut(s)	305, 685, 749, 947, 1103
BstF5I	GGATG	3 cut(s)	502, 1030, 1170
BstFNI	CGCG	1 cut(s)	1004
BstKTI	GATC	5 cut(s)	106, 430, 709, 748, 1170
BstMBI	GATC	5 cut(s)	103, 427, 706, 745, 1167
BstMCI	CGRYCG	1 cut(s)	709
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 235, 626, 659
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	3 cut(s)	260, 1110, 1140
BstSFI	CTRYAG	3 cut(s)	517, 538, 988
BstUI	CGCG	1 cut(s)	1004
BstV1I	GCAGC	2 cut(s)	24, 601
BstV2I	GAAGAC	5 cut(s)	90, 105, 611, 912, 973
BstX2I	RGATCY	2 cut(s)	103, 745
BstYI	RGATCY	2 cut(s)	103, 745
Bsu15I	ATCGAT	2 cut(s)	694, 779
BsuI	GTATCC	1 cut(s)	551
BsuRI	GGCC	3 cut(s)	158, 260, 1007
BsuTUI	ATCGAT	2 cut(s)	694, 779
BtsCI	GGATG	3 cut(s)	502, 1030, 1170
BtsIMutI	CAGTG	1 cut(s)	168
Cfr13I	GGNCC	3 cut(s)	26, 358, 1108
ClaI	ATCGAT	2 cut(s)	694, 779
Csp6I	GTAC	2 cut(s)	673, 892
CviAII	CATG	3 cut(s)	397, 1044, 1171
CviQI	GTAC	2 cut(s)	673, 892
DdeI	CTNAG	5 cut(s)	305, 685, 749, 947, 1103
DpnI	GATC	5 cut(s)	105, 429, 708, 747, 1169
DpnII	GATC	5 cut(s)	103, 427, 706, 745, 1167
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco147I	AGGCCT	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	1142
Eco32I	GATATC	2 cut(s)	531, 714
Eco47I	GGWCC	3 cut(s)	26, 358, 1108
EcoO109I	RGGNCCY	1 cut(s)	1108
EcoRII	CCWGG	1 cut(s)	260
EcoRV	GATATC	2 cut(s)	531, 714
EcoT38I	GRGCYC	1 cut(s)	1142
FaeI	CATG	3 cut(s)	400, 1047, 1174
FalI	AAGNNNNNCTT	2 cut(s)	775, 807
FaqI	GGGAC	1 cut(s)	1121
FatI	CATG	3 cut(s)	396, 1043, 1170
FbaI	TGATCA	1 cut(s)	1167
Fnu4HI	GCNGC	6 cut(s)	38, 179, 615, 618, 1005, 1082
FokI	GGATG	3 cut(s)	509, 1037, 1177
FriOI	GRGCYC	1 cut(s)	1142
Fsp4HI	GCNGC	6 cut(s)	38, 179, 615, 618, 1005, 1082
FspBI	CTAG	4 cut(s)	20, 383, 654, 1050
GluI	GCNGC	6 cut(s)	38, 179, 615, 618, 1005, 1082
HaeIII	GGCC	3 cut(s)	158, 260, 1007
HapII	CCGG	3 cut(s)	1112, 1124, 1142
Hin1II	CATG	3 cut(s)	400, 1047, 1174
HindIII	AAGCTT	2 cut(s)	266, 784
HinfI	GANTC	7 cut(s)	187, 272, 461, 683, 696, 815, 1099
HpaII	CCGG	3 cut(s)	1112, 1124, 1142
HphI	GGTGA	3 cut(s)	271, 976, 1156
Hpy166II	GTNNAC	2 cut(s)	29, 361
Hpy188I	TCNGA	7 cut(s)	200, 390, 688, 711, 718, 745, 750
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	2 cut(s)	29, 361
HpyAV	CCTTC	4 cut(s)	226, 487, 643, 816
HpyCH4III	ACNGT	1 cut(s)	1078
HpyCH4V	TGCA	7 cut(s)	11, 40, 479, 662, 728, 770, 932
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 235, 626, 659
HpyF3I	CTNAG	5 cut(s)	305, 685, 749, 947, 1103
Hsp92II	CATG	3 cut(s)	400, 1047, 1174
KflI	GGGWCCC	1 cut(s)	1108
KpnI	GGTACC	1 cut(s)	676
Ksp22I	TGATCA	1 cut(s)	1167
Kzo9I	GATC	5 cut(s)	103, 427, 706, 745, 1167
LmnI	GCTCC	7 cut(s)	10, 223, 235, 543, 955, 1120, 1137
Lsp1109I	GCAGC	2 cut(s)	24, 601
MaeI	CTAG	4 cut(s)	20, 383, 654, 1050
MaeIII	GTNAC	2 cut(s)	162, 1052
MalI	GATC	5 cut(s)	105, 429, 708, 747, 1169
MboI	GATC	5 cut(s)	103, 427, 706, 745, 1167
MfeI	CAATTG	1 cut(s)	810
MflI	RGATCY	2 cut(s)	103, 745
MhlI	GDGCHC	1 cut(s)	1142
MluCI	AATT	6 cut(s)	143, 438, 504, 657, 771, 810
MlyI	GAGTC	4 cut(s)	181, 266, 455, 677
MmeI	TCCRAC	1 cut(s)	414
MroXI	GAANNNNTTC	1 cut(s)	866
MseI	TTAA	2 cut(s)	128, 774
MspI	CCGG	3 cut(s)	1112, 1124, 1142
MspR9I	CCNGG	3 cut(s)	262, 1112, 1142
MunI	CAATTG	1 cut(s)	810
MvaI	CCWGG	1 cut(s)	262
MvnI	CGCG	1 cut(s)	1004
MwoI	GCNNNNNNNGC	4 cut(s)	43, 235, 626, 659
NciI	CCSGG	2 cut(s)	1112, 1142
NdeII	GATC	5 cut(s)	103, 427, 706, 745, 1167
NlaIII	CATG	3 cut(s)	400, 1047, 1174
NlaIV	GGNNCC	8 cut(s)	6, 219, 359, 674, 1109, 1110, 1122, 1139
NmuCI	GTSAC	1 cut(s)	162
PceI	AGGCCT	1 cut(s)	260
PdmI	GAANNNNTTC	1 cut(s)	866
PfeI	GAWTC	3 cut(s)	696, 815, 1099
PkrI	GCNGC	6 cut(s)	39, 180, 616, 619, 1006, 1083
Ple19I	CGATCG	1 cut(s)	709
PleI	GAGTC	4 cut(s)	181, 266, 455, 677
PpsI	GAGTC	4 cut(s)	181, 266, 455, 677
PpuMI	RGGWCCY	1 cut(s)	1108
Psp5II	RGGWCCY	1 cut(s)	1108
Psp6I	CCWGG	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	8 cut(s)	6, 219, 359, 674, 1109, 1110, 1122, 1139
PspPI	GGNCC	3 cut(s)	26, 358, 1108
PspPPI	RGGWCCY	1 cut(s)	1108
PsuI	RGATCY	2 cut(s)	103, 745
PvuI	CGATCG	1 cut(s)	709
RsaI	GTAC	2 cut(s)	674, 893
RsaNI	GTAC	2 cut(s)	673, 892
SaqAI	TTAA	2 cut(s)	128, 774
SatI	GCNGC	6 cut(s)	38, 179, 615, 618, 1005, 1082
Sau3AI	GATC	5 cut(s)	103, 427, 706, 745, 1167
Sau96I	GGNCC	3 cut(s)	26, 358, 1108
SchI	GAGTC	4 cut(s)	181, 266, 455, 677
ScrFI	CCNGG	3 cut(s)	262, 1112, 1142
SduI	GDGCHC	1 cut(s)	1142
SfcI	CTRYAG	3 cut(s)	517, 538, 988
SinI	GGWCC	3 cut(s)	26, 358, 1108
SmlI	CTYRAG	2 cut(s)	107, 287
SmoI	CTYRAG	2 cut(s)	107, 287
Sse9I	AATT	6 cut(s)	143, 438, 504, 657, 771, 810
SseBI	AGGCCT	1 cut(s)	260
SsiI	CCGC	5 cut(s)	179, 618, 1004, 1082, 1118
SspMI	CTAG	4 cut(s)	20, 383, 654, 1050
StuI	AGGCCT	1 cut(s)	260
StyD4I	CCNGG	3 cut(s)	260, 1110, 1140
TaaI	ACNGT	1 cut(s)	1078
TaqI	TCGA	3 cut(s)	423, 694, 779
TaqII	GACCGA	1 cut(s)	257
TasI	AATT	6 cut(s)	143, 438, 504, 657, 771, 810
TatI	WGTACW	1 cut(s)	891
TauI	GCSGC	4 cut(s)	181, 620, 1007, 1084
TfiI	GAWTC	3 cut(s)	696, 815, 1099
Tru1I	TTAA	2 cut(s)	128, 774
Tru9I	TTAA	2 cut(s)	128, 774
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	162
TseI	GCWGC	2 cut(s)	37, 614
Tsp45I	GTSAC	1 cut(s)	162
TspDTI	ATGAA	4 cut(s)	264, 458, 846, 1041
TspRI	CASTG	1 cut(s)	175
VpaK11BI	GGWCC	3 cut(s)	26, 358, 1108
XapI	RAATTY	2 cut(s)	143, 438
XmnI	GAANNNNTTC	1 cut(s)	866
XspI	CTAG	4 cut(s)	20, 383, 654, 1050

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.