Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001292

Physical Location & Seq

Genomic Coordinates Forward (+)

5764803 .. 5765657

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG055600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAAGATTGTGGACAGGTTGGGCATAAAAATTGGTGACAGGCTAAAACTTCCTCACCAAGTAATAGCTTTTTTGAACAATACACAGGGTAGTGATGAAATTGCAGAGCTTCAGTGGCAGAAACTAGTCCAAGGGCTGTCAAACAAAGGGAAGCTCAGGAATTGTCTTGCTGTGTGCGACAGCTCGTTGAGCATGATAGGGACAGACAAGGAAATGGCGTGCATTGCAATGGGATTATTGATTTCAGAACTGAGTGAGAGTCCATGGAATGGAGTGGTTTTCTCATTCACTGATTTTCCCAAAATTCACAAGATTGTAGGAGAAAGTCTTCGATCGAAGTGCGAGTTCATGAGGCAGATGGAGTGTGATGAGAAAGTGGACTGCTTAGAGATTTACAACCGAGTGTTGGAGATTGCCACCACACAAAAGCTAAACCACATAAAGATGCCAAAGAGGATTTTTGTGTTCACCTACAAGGATTTTGTTGAGGCCTTCAAGTATGATTGGCTGGATGATTACACAGAAGCATATAACAATTTCAGAAAAAGAGGGTTTGAGTTTAATGTGCCAGAGCTAGTGTTTTGGAATTTGAAGGATTCCATTGCCGAGTCAGAGGTGCTTTATAGCCCAGTGAAGGAGAACCAGAAAGTGGGGATCATAATAACAGGGTTCTCTAGCAATCTACTCAGGTTGTTCTTGAAAGGGGAGGCAGATTCAAGATCATATGCAGCTCAATTCCAGGCACCTTATGGTATCGATTTACAGTCAGTACCAAAACTGCTTCCTAGAGTAGAGAATGTGTTTGATAGTGCAATTTCAAGAGAAGAATTAGAGAGCCTGGTATTGTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

284

Amino Acids

32.6

Weight (kDa)

5.47

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7788	PF25043	54 - 237	2.4e-43	Domain of unknown function (DUF7788)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001292)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04500 FvH4_2g04520 FvH4_2g04540 FvH4_2g04550
malus_domestica	MD05G1095800.v1.1 MD05G1215400.v1.1
prunus_persica	Prupe.8G139800_v2.0.a1 Prupe.8G139900_v2.0.a1 Prupe.8G140000_v2.0.a1 Prupe.8G140100_v2.0.a1 Prupe.8G140200_v2.0.a1
pyrus_communis	pycom05g09450
rosa_chinensis	RchiOBHm_Chr6g0254021 RchiOBHm_Chr6g0254031 RchiOBHm_Chr6g0254051 RchiOBHm_Chr6g0254071 RchiOBHm_Chr6g0254131
rosa_laevigata	RLG00000014941 RLG00000014945 RLG00000014947 RLG00000014948 RLG00000028713
rosa_multiflora	Rmu_co8068492.1_g000001 Rmu_co8292957.1_g000001 Rmu_sc0000010.1_g000029 Rmu_sc0001716.1_g000022 Rmu_sc0001716.1_g000026 Rmu_sc0001716.1_g000030
rosa_roxburghii	Rroxscaffold_7G00211140 Rroxscaffold_7G00211260 Rroxscaffold_7G00211290 Rroxscaffold_7G00211300
rosa_rugosa	Rorug05G0549000
rosa_samantha	Rh6AG065500 Rh6AG065600 Rh6AG065800 Rh6AG066400 Rh6BG058400 Rh6BG058600 Rh6BG059500 Rh6CG058500 Rh6CG058600 Rh6CG058700 Rh6CG058800 Rh6CG059100 Rh6CG059200 Rh6DG055300 Rh6DG055400 Rh6DG055500 Rh6DG055600 Rh6DG056000 Rh6DG056100
rosa_wichuraiana	Rw6G005770 Rw6G005790 Rw6G005830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	742
AccB7I	CCANNNNNTGG	2 cut(s)	269, 649
AclWI	GGATC	1 cut(s)	662
AcsI	RAATTY	2 cut(s)	303, 586
AcuI	CTGAAG	1 cut(s)	95
AfaI	GTAC	1 cut(s)	771
AfiI	CCNNNNNNNGG	4 cut(s)	269, 406, 634, 649
AgsI	TTSAA	6 cut(s)	76, 496, 592, 700, 717, 819
AhlI	ACTAGT	1 cut(s)	124
AjnI	CCWGG	2 cut(s)	738, 837
AluBI	AGCT	7 cut(s)	68, 109, 154, 183, 430, 574, 731
AluI	AGCT	7 cut(s)	68, 109, 154, 183, 430, 574, 731
AlwI	GGATC	1 cut(s)	662
AoxI	GGCC	1 cut(s)	489
ApeKI	GCWGC	1 cut(s)	728
ApoI	RAATTY	2 cut(s)	303, 586
Asp700I	GAANNNNTTC	1 cut(s)	327
AsuHPI	GGTGA	3 cut(s)	47, 47, 460
BanI	GGYRCC	1 cut(s)	742
BbsI	GAAGAC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	740
BccI	CCATC	1 cut(s)	352
BcgI	CGANNNNNNTGC	2 cut(s)	321, 355
BciT130I	CCWGG	2 cut(s)	740, 839
BcuI	ACTAGT	1 cut(s)	124
BfaI	CTAG	4 cut(s)	125, 575, 675, 786
BisI	GCNGC	1 cut(s)	729
BlsI	GCNGC	1 cut(s)	730
Bme1390I	CCNGG	2 cut(s)	740, 839
BmiI	GGNNCC	1 cut(s)	744
BmrFI	CCNGG	2 cut(s)	740, 839
BmrI	ACTGGG	1 cut(s)	623
BmsI	GCATC	1 cut(s)	435
BmuI	ACTGGG	1 cut(s)	623
BpiI	GAAGAC	1 cut(s)	320
Bpu10I	CCTNAGC	1 cut(s)	155
Bsa29I	ATCGAT	1 cut(s)	756
BsaJI	CCNNGG	2 cut(s)	130, 263
Bsc4I	CCNNNNNNNGG	4 cut(s)	269, 406, 634, 649
Bse1I	ACTGG	1 cut(s)	629
Bse3DI	GCAATG	3 cut(s)	222, 234, 600
BseBI	CCWGG	2 cut(s)	740, 839
BseCI	ATCGAT	1 cut(s)	756
BseDI	CCNNGG	2 cut(s)	130, 263
BseGI	GGATG	1 cut(s)	517
BseLI	CCNNNNNNNGG	4 cut(s)	269, 406, 634, 649
BseMI	GCAATG	3 cut(s)	222, 234, 600
BseMII	CTCAG	3 cut(s)	169, 242, 700
BseNI	ACTGG	1 cut(s)	629
BseXI	GCAGC	1 cut(s)	740
Bsh1285I	CGRYCG	1 cut(s)	335
BshFI	GGCC	1 cut(s)	491
BshNI	GGYRCC	1 cut(s)	742
BshVI	ATCGAT	1 cut(s)	756
BsiEI	CGRYCG	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	4 cut(s)	269, 406, 634, 649
BsmFI	GGGAC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	491
Bsp143I	GATC	3 cut(s)	332, 654, 719
Bsp19I	CCATGG	1 cut(s)	263
BspANI	GGCC	1 cut(s)	491
BspCNI	CTCAG	3 cut(s)	168, 243, 699
BspDI	ATCGAT	1 cut(s)	756
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	744
BspPI	GGATC	1 cut(s)	662
BspT107I	GGYRCC	1 cut(s)	742
BsrDI	GCAATG	3 cut(s)	222, 234, 600
BsrI	ACTGG	1 cut(s)	629
BssECI	CCNNGG	2 cut(s)	130, 263
BssMI	GATC	3 cut(s)	332, 654, 719
BssT1I	CCWWGG	2 cut(s)	130, 263
Bst2UI	CCWGG	2 cut(s)	740, 839
Bst4CI	ACNGT	1 cut(s)	765
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	4 cut(s)	155, 251, 385, 686
BstDSI	CCRYGG	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	517
BstKTI	GATC	3 cut(s)	335, 657, 722
BstMBI	GATC	3 cut(s)	332, 654, 719
BstMCI	CGRYCG	1 cut(s)	335
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 189, 224
BstNI	CCWGG	2 cut(s)	740, 839
BstSCI	CCNGG	2 cut(s)	738, 837
BstV1I	GCAGC	1 cut(s)	740
BstV2I	GAAGAC	1 cut(s)	320
Bsu15I	ATCGAT	1 cut(s)	756
BsuRI	GGCC	1 cut(s)	491
BsuTUI	ATCGAT	1 cut(s)	756
BtgI	CCRYGG	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	517
BtsIMutI	CAGTG	3 cut(s)	119, 288, 636
Cac8I	GCNNGC	1 cut(s)	220
CciI	TCATGA	1 cut(s)	348
ClaI	ATCGAT	1 cut(s)	756
Csp6I	GTAC	1 cut(s)	770
CviAII	CATG	3 cut(s)	193, 264, 349
CviQI	GTAC	1 cut(s)	770
DdeI	CTNAG	4 cut(s)	155, 251, 385, 686
DpnI	GATC	3 cut(s)	334, 656, 721
DpnII	GATC	3 cut(s)	332, 654, 719
Eco130I	CCWWGG	2 cut(s)	130, 263
Eco147I	AGGCCT	1 cut(s)	491
Eco57I	CTGAAG	1 cut(s)	95
EcoRII	CCWGG	2 cut(s)	738, 837
EcoT14I	CCWWGG	2 cut(s)	130, 263
ErhI	CCWWGG	2 cut(s)	130, 263
FaeI	CATG	3 cut(s)	196, 267, 352
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	3 cut(s)	192, 263, 348
FauNDI	CATATG	1 cut(s)	724
Fnu4HI	GCNGC	1 cut(s)	729
FokI	GGATG	1 cut(s)	524
Fsp4HI	GCNGC	1 cut(s)	729
FspBI	CTAG	4 cut(s)	125, 575, 675, 786
GluI	GCNGC	1 cut(s)	729
HaeIII	GGCC	1 cut(s)	491
Hin1II	CATG	3 cut(s)	196, 267, 352
HinfI	GANTC	4 cut(s)	259, 596, 608, 713
HphI	GGTGA	3 cut(s)	47, 47, 460
Hpy166II	GTNNAC	3 cut(s)	13, 379, 468
Hpy188I	TCNGA	3 cut(s)	247, 542, 613
Hpy188III	TCNNGA	5 cut(s)	157, 349, 697, 717, 819
Hpy8I	GTNNAC	3 cut(s)	13, 379, 468
HpyAV	CCTTC	3 cut(s)	502, 586, 628
HpyCH4III	ACNGT	1 cut(s)	765
HpyCH4V	TGCA	5 cut(s)	104, 222, 227, 728, 812
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 189, 224
HpyF3I	CTNAG	4 cut(s)	155, 251, 385, 686
Hsp92II	CATG	3 cut(s)	196, 267, 352
Kzo9I	GATC	3 cut(s)	332, 654, 719
Lsp1109I	GCAGC	1 cut(s)	740
LweI	GCATC	1 cut(s)	435
MaeI	CTAG	4 cut(s)	125, 575, 675, 786
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	3 cut(s)	334, 656, 721
MboI	GATC	3 cut(s)	332, 654, 719
MboII	GAAGA	3 cut(s)	16, 320, 836
MluCI	AATT	9 cut(s)	30, 99, 160, 303, 535, 586, 734, 813, 827
MlyI	GAGTC	2 cut(s)	268, 617
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	7 cut(s)	63, 345, 447, 481, 542, 607, 700
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	1 cut(s)	561
MslI	CAYNNNNRTG	2 cut(s)	227, 443
MspR9I	CCNGG	2 cut(s)	740, 839
MvaI	CCWGG	2 cut(s)	740, 839
MwoI	GCNNNNNNNGC	3 cut(s)	115, 189, 224
NcoI	CCATGG	1 cut(s)	263
NdeI	CATATG	1 cut(s)	724
NdeII	GATC	3 cut(s)	332, 654, 719
NlaIII	CATG	3 cut(s)	196, 267, 352
NlaIV	GGNNCC	1 cut(s)	744
NmeAIII	GCCGAG	1 cut(s)	631
NmuCI	GTSAC	1 cut(s)	35
PagI	TCATGA	1 cut(s)	348
PceI	AGGCCT	1 cut(s)	491
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	2 cut(s)	596, 713
PflMI	CCANNNNNTGG	2 cut(s)	269, 649
PkrI	GCNGC	1 cut(s)	730
Ple19I	CGATCG	1 cut(s)	335
PleI	GAGTC	2 cut(s)	267, 616
PpsI	GAGTC	2 cut(s)	267, 616
Psp6I	CCWGG	2 cut(s)	738, 837
PspGI	CCWGG	2 cut(s)	738, 837
PspN4I	GGNNCC	1 cut(s)	744
PvuI	CGATCG	1 cut(s)	335
RsaI	GTAC	1 cut(s)	771
RsaNI	GTAC	1 cut(s)	770
RseI	CAYNNNNRTG	2 cut(s)	227, 443
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	1 cut(s)	729
Sau3AI	GATC	3 cut(s)	332, 654, 719
SchI	GAGTC	2 cut(s)	268, 617
ScrFI	CCNGG	2 cut(s)	740, 839
SfaNI	GCATC	1 cut(s)	435
SmiMI	CAYNNNNRTG	2 cut(s)	227, 443
SpeI	ACTAGT	1 cut(s)	124
Sse9I	AATT	9 cut(s)	30, 99, 160, 303, 535, 586, 734, 813, 827
SseBI	AGGCCT	1 cut(s)	491
SspMI	CTAG	4 cut(s)	125, 575, 675, 786
StuI	AGGCCT	1 cut(s)	491
StyD4I	CCNGG	2 cut(s)	738, 837
StyI	CCWWGG	2 cut(s)	130, 263
TaaI	ACNGT	1 cut(s)	765
TaqI	TCGA	3 cut(s)	331, 335, 756
TasI	AATT	9 cut(s)	30, 99, 160, 303, 535, 586, 734, 813, 827
TfiI	GAWTC	2 cut(s)	596, 713
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	3 cut(s)	119, 295, 636
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	3 cut(s)	17, 111, 337
TspRI	CASTG	3 cut(s)	119, 295, 636
Van91I	CCANNNNNTGG	2 cut(s)	269, 649
XapI	RAATTY	2 cut(s)	303, 586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	746
XmnI	GAANNNNTTC	1 cut(s)	327
XspI	CTAG	4 cut(s)	125, 575, 675, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.