Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8068492.1

Orthogroup ID

OG0001292

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 446

Gene Structure 445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8068492.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 445 bp

atgaggtcgagcatgacagggacattcaaggaggcggcttgtatctcaatgggattattgatttcggagttgagtgaaaatccatggaaaggaaagatcttctccttcaacgaatttcccaagctgaaaaaggttgaaggagacgatcttcaatccaaatgcgagttcatgaggcagatggaatgcacggagaaagttaacttcggcgctatttacaatcggattttgcagattgcactcacagagaagctaagtaaggagcaaatgcctaaaaggattttcgtcttcacctatagtgattttgtcgcggcctccaaaaacaactggaatgaagaatacagggaagcatgggctagttacagaaagagagggttttcaactgtgccgcaaatggtgttttggaatcttagggacccggttggggagccggaggtatttgggagcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

148

Amino Acids

17.23

Weight (kDa)

8.41

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001292)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04500 FvH4_2g04520 FvH4_2g04540 FvH4_2g04550
malus_domestica	MD05G1095800.v1.1 MD05G1215400.v1.1
prunus_persica	Prupe.8G139800_v2.0.a1 Prupe.8G139900_v2.0.a1 Prupe.8G140000_v2.0.a1 Prupe.8G140100_v2.0.a1 Prupe.8G140200_v2.0.a1
pyrus_communis	pycom05g09450
rosa_chinensis	RchiOBHm_Chr6g0254021 RchiOBHm_Chr6g0254031 RchiOBHm_Chr6g0254051 RchiOBHm_Chr6g0254071 RchiOBHm_Chr6g0254131
rosa_laevigata	RLG00000014941 RLG00000014945 RLG00000014947 RLG00000014948 RLG00000028713
rosa_multiflora	Rmu_co8068492.1_g000001 Rmu_co8292957.1_g000001 Rmu_sc0000010.1_g000029 Rmu_sc0001716.1_g000022 Rmu_sc0001716.1_g000026 Rmu_sc0001716.1_g000030
rosa_roxburghii	Rroxscaffold_7G00211140 Rroxscaffold_7G00211260 Rroxscaffold_7G00211290 Rroxscaffold_7G00211300
rosa_rugosa	Rorug05G0549000
rosa_samantha	Rh6AG065500 Rh6AG065600 Rh6AG065800 Rh6AG066400 Rh6BG058400 Rh6BG058600 Rh6BG059500 Rh6CG058500 Rh6CG058600 Rh6CG058700 Rh6CG058800 Rh6CG059100 Rh6CG059200 Rh6DG055300 Rh6DG055400 Rh6DG055500 Rh6DG055600 Rh6DG056000 Rh6DG056100
rosa_wichuraiana	Rw6G005770 Rw6G005790 Rw6G005830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	308
AciI	CCGC	3 cut(s)	35, 308, 386
AcsI	RAATTY	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	89, 421
AgsI	TTSAA	5 cut(s)	28, 109, 137, 152, 378
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AluBI	AGCT	2 cut(s)	124, 250
AluI	AGCT	2 cut(s)	124, 250
Alw26I	GTCTC	1 cut(s)	135
AoxI	GGCC	1 cut(s)	309
ApoI	RAATTY	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	412
AsuC2I	CCSGG	1 cut(s)	416
AsuHPI	GGTGA	1 cut(s)	280
AvaII	GGWCC	1 cut(s)	412
BbsI	GAAGAC	1 cut(s)	277
BccI	CCATC	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	292
BfoI	RGCGCY	1 cut(s)	210
BglII	AGATCT	1 cut(s)	96
BisI	GCNGC	3 cut(s)	36, 309, 386
BlsI	GCNGC	3 cut(s)	37, 310, 387
Bme1390I	CCNGG	1 cut(s)	416
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	4 cut(s)	413, 414, 426, 443
BmrFI	CCNGG	1 cut(s)	416
BpiI	GAAGAC	1 cut(s)	277
BpuMI	CCSGG	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 421
Bse1I	ACTGG	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	83
BseLI	CCNNNNNNNGG	2 cut(s)	89, 421
BseNI	ACTGG	1 cut(s)	329
Bsh1236I	CGCG	1 cut(s)	308
BshFI	GGCC	1 cut(s)	311
BsiSI	CCGG	2 cut(s)	416, 428
BslFI	GGGAC	2 cut(s)	34, 425
BslI	CCNNNNNNNGG	2 cut(s)	89, 421
BsmAI	GTCTC	1 cut(s)	135
BsmBI	CGTCTC	1 cut(s)	135
BsmFI	GGGAC	2 cut(s)	34, 425
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	311
Bsp143I	GATC	2 cut(s)	96, 145
Bsp19I	CCATGG	1 cut(s)	83
BspACI	CCGC	3 cut(s)	35, 308, 386
BspANI	GGCC	1 cut(s)	311
BspFNI	CGCG	1 cut(s)	308
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	4 cut(s)	413, 414, 426, 443
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	2 cut(s)	96, 145
BssT1I	CCWWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	382
BstDEI	CTNAG	2 cut(s)	251, 407
BstDSI	CCRYGG	1 cut(s)	83
BstFNI	CGCG	1 cut(s)	308
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	2 cut(s)	99, 148
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	2 cut(s)	96, 145
BstSCI	CCNGG	1 cut(s)	414
BstSFI	CTRYAG	1 cut(s)	292
BstUI	CGCG	1 cut(s)	308
BstV2I	GAAGAC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	311
BtgI	CCRYGG	1 cut(s)	83
CciI	TCATGA	1 cut(s)	168
CfoI	GCGC	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	412
CviAII	CATG	4 cut(s)	13, 84, 169, 348
CviJI	RGCY	7 cut(s)	38, 124, 250, 311, 353, 427, 444
CviKI_1	RGCY	7 cut(s)	38, 124, 250, 311, 353, 427, 444
DdeI	CTNAG	2 cut(s)	251, 407
DpnI	GATC	2 cut(s)	98, 147
DpnII	GATC	2 cut(s)	96, 145
Eco130I	CCWWGG	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	412
EcoO109I	RGGNCCY	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	83
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	4 cut(s)	16, 87, 172, 351
FaiI	YATR	5 cut(s)	14, 85, 170, 294, 349
FaqI	GGGAC	2 cut(s)	34, 425
FatI	CATG	4 cut(s)	12, 83, 168, 347
Fnu4HI	GCNGC	3 cut(s)	36, 309, 386
Fsp4HI	GCNGC	3 cut(s)	36, 309, 386
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	3 cut(s)	36, 309, 386
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	2 cut(s)	416, 428
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	4 cut(s)	16, 87, 172, 351
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	403
HpaI	GTTAAC	1 cut(s)	199
HpaII	CCGG	2 cut(s)	416, 428
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	67, 222
Hpy188III	TCNNGA	1 cut(s)	169
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	2 cut(s)	115, 131
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4V	TGCA	3 cut(s)	186, 229, 236
HpyF3I	CTNAG	2 cut(s)	251, 407
Hsp92II	CATG	4 cut(s)	16, 87, 172, 351
HspAI	GCGC	1 cut(s)	207
KflI	GGGWCCC	1 cut(s)	412
KspAI	GTTAAC	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	96, 145
LmnI	GCTCC	3 cut(s)	259, 424, 441
LpnPI	CCDG	5 cut(s)	3, 310, 325, 429, 441
MaeI	CTAG	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	2 cut(s)	98, 147
MboI	GATC	2 cut(s)	96, 145
MboII	GAAGA	4 cut(s)	91, 140, 277, 344
MflI	RGATCY	1 cut(s)	96
MluCI	AATT	1 cut(s)	113
MnlI	CCTC	5 cut(s)	25, 165, 322, 362, 424
MseI	TTAA	1 cut(s)	198
MspI	CCGG	2 cut(s)	416, 428
MspR9I	CCNGG	1 cut(s)	416
Mva1269I	GAATGC	1 cut(s)	188
MvnI	CGCG	1 cut(s)	308
NciI	CCSGG	1 cut(s)	416
NcoI	CCATGG	1 cut(s)	83
NdeII	GATC	2 cut(s)	96, 145
NlaIII	CATG	4 cut(s)	16, 87, 172, 351
NlaIV	GGNNCC	4 cut(s)	413, 414, 426, 443
PagI	TCATGA	1 cut(s)	168
PctI	GAATGC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	403
PkrI	GCNGC	3 cut(s)	37, 310, 387
PpuMI	RGGWCCY	1 cut(s)	412
Psp5II	RGGWCCY	1 cut(s)	412
PspN4I	GGNNCC	4 cut(s)	413, 414, 426, 443
PspPI	GGNCC	1 cut(s)	412
PspPPI	RGGWCCY	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	3 cut(s)	36, 309, 386
Sau3AI	GATC	2 cut(s)	96, 145
Sau96I	GGNCC	1 cut(s)	412
ScrFI	CCNGG	1 cut(s)	416
SetI	ASST	6 cut(s)	8, 126, 135, 252, 293, 435
SfcI	CTRYAG	1 cut(s)	292
SinI	GGWCC	1 cut(s)	412
Sse9I	AATT	1 cut(s)	113
SsiI	CCGC	3 cut(s)	35, 308, 386
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	1 cut(s)	382
TaqI	TCGA	1 cut(s)	8
TasI	AATT	1 cut(s)	113
TauI	GCSGC	3 cut(s)	38, 311, 388
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TspDTI	ATGAA	2 cut(s)	157, 345
TspGWI	ACGGA	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	412
XapI	RAATTY	1 cut(s)	113
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.