Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001292

Physical Location & Seq

Genomic Coordinates Reverse (-)

26918126 .. 26918953

Gene Structure 828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028713

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCCATTCGGGCTCTGCAAGCTCAACTTTTTGTTGGGATTTTGTCAAGGCTTTCTTTTTCGTTTTCGCTCGTTGAGCATGATAGGGACAGACAAGGAAATGGCGTGCATTGCAATGGGATTATTGATTTCAGAACTGAGTGAGAGTCCATGGAATGGAGTGGTTTTCTCATTCACTGATTTTCCCAAAATTCACAAGATTGTAGGAGAAAGTCTTCGATCGAAGTGCGAGTTCATGAGACAGATGGAGTGTGATGAGAAAGTGGACTGCTTAGAGATTTACAACCGAGTGTTGGAGATTGCCACCACACAAAAGCTAAACCACATAAAGATGCCAAAGAGGATTTTTGTGTTCACCTACAAGGATTTTGTTGAGGCCTTCAAGTATGGTTGGCTGGATGATTACACAGAAGCATATAACAATTTCAGAAAAAGAGGGTTTGAGTTTAATGTGCCAGAGCTAGTGTTTTGGAATTTGAAGGATTCCATTGCCGAGCCAGAGGTGATTTATAGCCCAGTGAAGGAGAACCAGAAAGTGGGGATCATAATAACAGGGTTCTCTAGCAATCTACTCAGGTTGTTCTTGAAAGGGGAGGCAGATTCAAGATCATATGCAGCTCAATTCCGGGCACCTTACGGTATCGATTTACAGTCAGTACCAAAACTGCTTCCTAGAGTAGAGGATGTGTTTGATAGTGCAATTTCAAGAGAAGAATTAGAGAGCCTGGTATTGTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

247

Amino Acids

28.51

Weight (kDa)

5.46

Isoelectric Point (pI)

50.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7788	PF25043	32 - 199	1e-38	Domain of unknown function (DUF7788)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001292)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04500 FvH4_2g04520 FvH4_2g04540 FvH4_2g04550
malus_domestica	MD05G1095800.v1.1 MD05G1215400.v1.1
prunus_persica	Prupe.8G139800_v2.0.a1 Prupe.8G139900_v2.0.a1 Prupe.8G140000_v2.0.a1 Prupe.8G140100_v2.0.a1 Prupe.8G140200_v2.0.a1
pyrus_communis	pycom05g09450
rosa_chinensis	RchiOBHm_Chr6g0254021 RchiOBHm_Chr6g0254031 RchiOBHm_Chr6g0254051 RchiOBHm_Chr6g0254071 RchiOBHm_Chr6g0254131
rosa_laevigata	RLG00000014941 RLG00000014945 RLG00000014947 RLG00000014948 RLG00000028713
rosa_multiflora	Rmu_co8068492.1_g000001 Rmu_co8292957.1_g000001 Rmu_sc0000010.1_g000029 Rmu_sc0001716.1_g000022 Rmu_sc0001716.1_g000026 Rmu_sc0001716.1_g000030
rosa_roxburghii	Rroxscaffold_7G00211140 Rroxscaffold_7G00211260 Rroxscaffold_7G00211290 Rroxscaffold_7G00211300
rosa_rugosa	Rorug05G0549000
rosa_samantha	Rh6AG065500 Rh6AG065600 Rh6AG065800 Rh6AG066400 Rh6BG058400 Rh6BG058600 Rh6BG059500 Rh6CG058500 Rh6CG058600 Rh6CG058700 Rh6CG058800 Rh6CG059100 Rh6CG059200 Rh6DG055300 Rh6DG055400 Rh6DG055500 Rh6DG055600 Rh6DG056000 Rh6DG056100
rosa_wichuraiana	Rw6G005770 Rw6G005790 Rw6G005830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	628
AccB7I	CCANNNNNTGG	2 cut(s)	155, 535
AclWI	GGATC	1 cut(s)	548
AcsI	RAATTY	2 cut(s)	189, 472
AfaI	GTAC	1 cut(s)	657
AfiI	CCNNNNNNNGG	4 cut(s)	155, 292, 520, 535
AgsI	TTSAA	5 cut(s)	382, 478, 586, 603, 705
AjnI	CCWGG	1 cut(s)	723
AluBI	AGCT	4 cut(s)	22, 316, 460, 617
AluI	AGCT	4 cut(s)	22, 316, 460, 617
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	1 cut(s)	548
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	1 cut(s)	614
ApoI	RAATTY	2 cut(s)	189, 472
Asp700I	GAANNNNTTC	1 cut(s)	213
AsuC2I	CCSGG	1 cut(s)	626
AsuHPI	GGTGA	2 cut(s)	346, 514
BaeGI	GKGCMC	1 cut(s)	631
BanI	GGYRCC	1 cut(s)	628
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	626
BccI	CCATC	1 cut(s)	238
BcgI	CGANNNNNNTGC	2 cut(s)	207, 241
BciT130I	CCWGG	1 cut(s)	725
BcnI	CCSGG	1 cut(s)	626
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	3 cut(s)	461, 561, 672
BglI	GCCNNNNNGGC	1 cut(s)	10
BisI	GCNGC	1 cut(s)	615
BlsI	GCNGC	1 cut(s)	616
Bme1390I	CCNGG	2 cut(s)	626, 725
BmiI	GGNNCC	1 cut(s)	630
BmrFI	CCNGG	2 cut(s)	626, 725
BmrI	ACTGGG	1 cut(s)	509
BmsI	GCATC	1 cut(s)	321
BmuI	ACTGGG	1 cut(s)	509
BpiI	GAAGAC	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	626
Bsa29I	ATCGAT	1 cut(s)	642
BsaJI	CCNNGG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	4 cut(s)	155, 292, 520, 535
Bse1I	ACTGG	1 cut(s)	515
Bse3DI	GCAATG	3 cut(s)	108, 120, 486
BseBI	CCWGG	1 cut(s)	725
BseCI	ATCGAT	1 cut(s)	642
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	2 cut(s)	403, 688
BseLI	CCNNNNNNNGG	4 cut(s)	155, 292, 520, 535
BseMI	GCAATG	3 cut(s)	108, 120, 486
BseMII	CTCAG	2 cut(s)	128, 586
BseNI	ACTGG	1 cut(s)	515
BseSI	GKGCMC	1 cut(s)	631
BseXI	GCAGC	1 cut(s)	626
Bsh1285I	CGRYCG	1 cut(s)	221
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	628
BshVI	ATCGAT	1 cut(s)	642
BsiEI	CGRYCG	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	625
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	4 cut(s)	155, 292, 520, 535
BsmAI	GTCTC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	377
Bsp1286I	GDGCHC	2 cut(s)	15, 631
Bsp143I	GATC	3 cut(s)	218, 540, 605
Bsp19I	CCATGG	1 cut(s)	149
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	2 cut(s)	129, 585
BspDI	ATCGAT	1 cut(s)	642
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	630
BspPI	GGATC	1 cut(s)	548
BspT107I	GGYRCC	1 cut(s)	628
BsrDI	GCAATG	3 cut(s)	108, 120, 486
BsrI	ACTGG	1 cut(s)	515
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	3 cut(s)	218, 540, 605
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	725
Bst4CI	ACNGT	2 cut(s)	638, 651
BstC8I	GCNNGC	2 cut(s)	20, 106
BstDEI	CTNAG	3 cut(s)	137, 271, 572
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	2 cut(s)	403, 688
BstKTI	GATC	3 cut(s)	221, 543, 608
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	3 cut(s)	218, 540, 605
BstMCI	CGRYCG	1 cut(s)	221
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 19, 75, 110
BstNI	CCWGG	1 cut(s)	725
BstSCI	CCNGG	2 cut(s)	624, 723
BstSLI	GKGCMC	1 cut(s)	631
BstV1I	GCAGC	1 cut(s)	626
BstV2I	GAAGAC	1 cut(s)	206
Bsu15I	ATCGAT	1 cut(s)	642
BsuRI	GGCC	1 cut(s)	377
BsuTUI	ATCGAT	1 cut(s)	642
BtgI	CCRYGG	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	403, 688
BtsIMutI	CAGTG	2 cut(s)	174, 522
Cac8I	GCNNGC	2 cut(s)	20, 106
CciI	TCATGA	1 cut(s)	234
ClaI	ATCGAT	1 cut(s)	642
Csp6I	GTAC	1 cut(s)	656
CviAII	CATG	3 cut(s)	79, 150, 235
CviQI	GTAC	1 cut(s)	656
DdeI	CTNAG	3 cut(s)	137, 271, 572
DpnI	GATC	3 cut(s)	220, 542, 607
DpnII	GATC	3 cut(s)	218, 540, 605
Eco130I	CCWWGG	1 cut(s)	149
Eco147I	AGGCCT	1 cut(s)	377
Eco24I	GRGCYC	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	723
EcoT14I	CCWWGG	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	3 cut(s)	82, 153, 238
FalI	AAGNNNNNCTT	4 cut(s)	11, 43, 39, 71
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	3 cut(s)	78, 149, 234
FauNDI	CATATG	1 cut(s)	610
Fnu4HI	GCNGC	1 cut(s)	615
FokI	GGATG	2 cut(s)	410, 695
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	615
FspBI	CTAG	3 cut(s)	461, 561, 672
GluI	GCNGC	1 cut(s)	615
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	1 cut(s)	625
Hin1II	CATG	3 cut(s)	82, 153, 238
HinfI	GANTC	3 cut(s)	145, 482, 599
HpaII	CCGG	1 cut(s)	625
HphI	GGTGA	2 cut(s)	346, 514
Hpy166II	GTNNAC	2 cut(s)	265, 354
Hpy188I	TCNGA	2 cut(s)	133, 428
Hpy188III	TCNNGA	4 cut(s)	235, 583, 603, 705
Hpy8I	GTNNAC	2 cut(s)	265, 354
HpyAV	CCTTC	3 cut(s)	388, 472, 514
HpyCH4III	ACNGT	2 cut(s)	638, 651
HpyCH4V	TGCA	5 cut(s)	18, 108, 113, 614, 698
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 19, 75, 110
HpyF3I	CTNAG	3 cut(s)	137, 271, 572
Hsp92II	CATG	3 cut(s)	82, 153, 238
Kzo9I	GATC	3 cut(s)	218, 540, 605
Lsp1109I	GCAGC	1 cut(s)	626
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	3 cut(s)	461, 561, 672
MalI	GATC	3 cut(s)	220, 542, 607
MboI	GATC	3 cut(s)	218, 540, 605
MboII	GAAGA	2 cut(s)	206, 722
MhlI	GDGCHC	2 cut(s)	15, 631
MluCI	AATT	6 cut(s)	189, 421, 472, 620, 699, 713
MlyI	GAGTC	1 cut(s)	154
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	6 cut(s)	333, 367, 428, 493, 586, 673
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	2 cut(s)	113, 329
MspI	CCGG	1 cut(s)	625
MspR9I	CCNGG	2 cut(s)	626, 725
MvaI	CCWGG	1 cut(s)	725
MwoI	GCNNNNNNNGC	4 cut(s)	10, 19, 75, 110
NciI	CCSGG	1 cut(s)	626
NcoI	CCATGG	1 cut(s)	149
NdeI	CATATG	1 cut(s)	610
NdeII	GATC	3 cut(s)	218, 540, 605
NlaIII	CATG	3 cut(s)	82, 153, 238
NlaIV	GGNNCC	1 cut(s)	630
NmeAIII	GCCGAG	1 cut(s)	517
PagI	TCATGA	1 cut(s)	234
PceI	AGGCCT	1 cut(s)	377
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	482, 599
PflMI	CCANNNNNTGG	2 cut(s)	155, 535
PkrI	GCNGC	1 cut(s)	616
Ple19I	CGATCG	1 cut(s)	221
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	723
PspGI	CCWGG	1 cut(s)	723
PspN4I	GGNNCC	1 cut(s)	630
PvuI	CGATCG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	657
RsaNI	GTAC	1 cut(s)	656
RseI	CAYNNNNRTG	2 cut(s)	113, 329
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	1 cut(s)	615
Sau3AI	GATC	3 cut(s)	218, 540, 605
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	2 cut(s)	626, 725
SduI	GDGCHC	2 cut(s)	15, 631
SetI	ASST	8 cut(s)	24, 318, 359, 462, 504, 578, 619, 634
SfaNI	GCATC	1 cut(s)	321
SmiMI	CAYNNNNRTG	2 cut(s)	113, 329
Sse9I	AATT	6 cut(s)	189, 421, 472, 620, 699, 713
SseBI	AGGCCT	1 cut(s)	377
SspMI	CTAG	3 cut(s)	461, 561, 672
StuI	AGGCCT	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	624, 723
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	2 cut(s)	638, 651
TaqI	TCGA	3 cut(s)	217, 221, 642
TasI	AATT	6 cut(s)	189, 421, 472, 620, 699, 713
TfiI	GAWTC	2 cut(s)	482, 599
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	2 cut(s)	181, 522
TseI	GCWGC	1 cut(s)	614
TspDTI	ATGAA	1 cut(s)	223
TspRI	CASTG	2 cut(s)	181, 522
Van91I	CCANNNNNTGG	2 cut(s)	155, 535
XapI	RAATTY	2 cut(s)	189, 472
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	3 cut(s)	461, 561, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.