Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001292

Physical Location & Seq

Genomic Coordinates Forward (+)

5761102 .. 5762385

Gene Structure 1284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG055300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGCTTCTCAGTTTTGTCTACTAGGGCCGTCGGAGCTCCGCCGCCCTAACCTCCCCAAAACCAACCGAACCCTTATGACAACCTCAGAATATCAGGACCCTTCGCTTTCAGACTTAAAGCCACTCTTAGGGTTTATCTTCGAGGATGCGAATTACGCCGGAAAGCCGCCAGTTCCGGCAGAGAGAATTTCCAAATATAAGTTAGATGACAGAGGGGAAACGGCTTGGAAGGTTGGCCCTCTCAAAACCCTCAAACTTATATTGAGTCTCAGAGCGGCGGGGAAGCTTGACGATGATGGGTTTTACAGAACCATGTTGTGGGTCCACAAAAACCATCCTTTAACCCTAACTTTGAATCTCAAAGTTTTTGGGGATTTAGGGTTGTTCAAAGATGTGCTGGGAATTCTCCATAAGGTTTTGGAGGAATCCATATGTGGACATTATCTGTGGACTCCATATGGGTACTGGTGGACTCCAAATGGGTACTATTTTTCATTCCTTGAAGGGTACCAGTGTTTAGAGAAGGAAGAGCACCCTTTGTTACGATACGGGAAGGAAAAAGAGGAGAGAAATAAAGTTGAAGAGGTAGTTGCAGCATGGAGAAGAGCAGATGACATTTCAAAGGCTAAAATTGCAGTTGAGAGGTACCAAAATGACCAAAGGTATCGAAACTTGCATTATCAAGTAGCTGATTTGTTTGCAGAGTTCTTGAAATCTGATCTCAAATTTTTGGAATCGGGTGAGATTGAAAACATCAGTTTTGCAGCCAAATTTTGCCCTTCAATTGGTTCAAAATATGATAAAGAAACCTTGATATGTGAAGTCATTGCAAAGAGAATGTTCCCACGTGACGATTATGAAGAGTACAAAGATATTTTGGAACCTCATTATGGTTACAGGGTTCGTGATCGTTTGAGGAAGCAAGTACTTGTTCCTCTCCGCCATGCCCTAATGTCAAGTCAACTGAACAATGCTGCTGCGAGAAAATTGAAGATGCCACCCGAAACGGCCAAGGCTTTGAATTCTATGAAAATTTATAGGAAGATTATGTATTATGGGGGAAGCTATCAATTCAAGCAATGTATGAAGATTGTGGGCATGTATGGTGATGGATTAAAACTTCCTCACCAAGTAATAGATTCCTTGAACAATGGTCAGAGTAGTGATGAAATTGCTGAGCTTCAATGGCAAAGACTAATCCGAGAGTTGTCAGACAAAGGGAAGCTCAGGAATTGTATTGCTGTGTCTGACATTCCGGAAAGCATGAGAGGGACAACCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

427

Amino Acids

49.46

Weight (kDa)

8.86

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2828	PF11443	63 - 409	7.6e-60	Domain of unknown function (DUF2828)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001292)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04500 FvH4_2g04520 FvH4_2g04540 FvH4_2g04550
malus_domestica	MD05G1095800.v1.1 MD05G1215400.v1.1
prunus_persica	Prupe.8G139800_v2.0.a1 Prupe.8G139900_v2.0.a1 Prupe.8G140000_v2.0.a1 Prupe.8G140100_v2.0.a1 Prupe.8G140200_v2.0.a1
pyrus_communis	pycom05g09450
rosa_chinensis	RchiOBHm_Chr6g0254021 RchiOBHm_Chr6g0254031 RchiOBHm_Chr6g0254051 RchiOBHm_Chr6g0254071 RchiOBHm_Chr6g0254131
rosa_laevigata	RLG00000014941 RLG00000014945 RLG00000014947 RLG00000014948 RLG00000028713
rosa_multiflora	Rmu_co8068492.1_g000001 Rmu_co8292957.1_g000001 Rmu_sc0000010.1_g000029 Rmu_sc0001716.1_g000022 Rmu_sc0001716.1_g000026 Rmu_sc0001716.1_g000030
rosa_roxburghii	Rroxscaffold_7G00211140 Rroxscaffold_7G00211260 Rroxscaffold_7G00211290 Rroxscaffold_7G00211300
rosa_rugosa	Rorug05G0549000
rosa_samantha	Rh6AG065500 Rh6AG065600 Rh6AG065800 Rh6AG066400 Rh6BG058400 Rh6BG058600 Rh6BG059500 Rh6CG058500 Rh6CG058600 Rh6CG058700 Rh6CG058800 Rh6CG059100 Rh6CG059200 Rh6DG055300 Rh6DG055400 Rh6DG055500 Rh6DG055600 Rh6DG056000 Rh6DG056100
rosa_wichuraiana	Rw6G005770 Rw6G005790 Rw6G005830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	507, 645
AccB1I	GGYRCC	2 cut(s)	507, 645
AccB7I	CCANNNNNTGG	1 cut(s)	318
AccBSI	CCGCTC	1 cut(s)	275
AccI	GTMKAC	1 cut(s)	19
AccIII	TCCGGA	1 cut(s)	1255
AciI	CCGC	6 cut(s)	40, 43, 167, 275, 278, 940
AcoI	YGGCCR	1 cut(s)	1008
AcsI	RAATTY	6 cut(s)	186, 402, 725, 770, 1021, 1032
AcvI	CACGTG	1 cut(s)	848
AfaI	GTAC	6 cut(s)	464, 485, 509, 647, 866, 927
AfiI	CCNNNNNNNGG	4 cut(s)	128, 318, 785, 890
AluBI	AGCT	6 cut(s)	37, 286, 689, 1065, 1180, 1225
AluI	AGCT	6 cut(s)	37, 286, 689, 1065, 1180, 1225
Alw21I	GWGCWC	2 cut(s)	39, 534
Alw26I	GTCTC	1 cut(s)	272
Aor13HI	TCCGGA	1 cut(s)	1255
AoxI	GGCC	3 cut(s)	26, 235, 1008
ApeKI	GCWGC	4 cut(s)	593, 764, 974, 977
ApoI	RAATTY	6 cut(s)	186, 402, 725, 770, 1021, 1032
Asp718I	GGTACC	2 cut(s)	507, 645
AspS9I	GGNCC	4 cut(s)	26, 97, 236, 322
AsuHPI	GGTGA	3 cut(s)	752, 1118, 1118
AvaII	GGWCC	2 cut(s)	97, 322
BaeI	ACNNNNGTAYC	2 cut(s)	499, 532
BanI	GGYRCC	2 cut(s)	507, 645
BanII	GRGCYC	1 cut(s)	39
BbrPI	CACGTG	1 cut(s)	848
Bbv12I	GWGCWC	2 cut(s)	39, 534
BbvI	GCAGC	4 cut(s)	605, 776, 961, 964
BccI	CCATC	3 cut(s)	290, 342, 1103
BceAI	ACGGC	3 cut(s)	13, 237, 1023
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	23
BisI	GCNGC	7 cut(s)	43, 167, 276, 594, 765, 975, 978
BlpI	GCTNAGC	1 cut(s)	1176
BlsI	GCNGC	7 cut(s)	44, 168, 277, 595, 766, 976, 979
BmcAI	AGTACT	1 cut(s)	927
Bme18I	GGWCC	2 cut(s)	97, 322
BmgT120I	GGNCC	4 cut(s)	26, 97, 236, 322
BmiI	GGNNCC	5 cut(s)	99, 323, 509, 647, 882
BmsI	GCATC	2 cut(s)	136, 984
Bpu10I	CCTNAGC	1 cut(s)	1226
Bpu1102I	GCTNAGC	1 cut(s)	1176
BsaAI	YACGTR	1 cut(s)	848
BsaJI	CCNNGG	1 cut(s)	1011
BsaWI	WCCGGW	1 cut(s)	1255
Bsc4I	CCNNNNNNNGG	4 cut(s)	128, 318, 785, 890
Bse1I	ACTGG	3 cut(s)	170, 470, 511
Bse3DI	GCAATG	2 cut(s)	825, 1085
BseAI	TCCGGA	1 cut(s)	1255
BseDI	CCNNGG	1 cut(s)	1011
BseGI	GGATG	2 cut(s)	151, 334
BseLI	CCNNNNNNNGG	4 cut(s)	128, 318, 785, 890
BseMI	GCAATG	2 cut(s)	825, 1085
BseMII	CTCAG	5 cut(s)	23, 99, 283, 1167, 1240
BseNI	ACTGG	3 cut(s)	170, 470, 511
BseRI	GAGGAG	1 cut(s)	578
BseXI	GCAGC	4 cut(s)	605, 776, 961, 964
BseYI	CCCAGC	1 cut(s)	397
BshFI	GGCC	3 cut(s)	28, 237, 1010
BshNI	GGYRCC	2 cut(s)	507, 645
BsiHKAI	GWGCWC	2 cut(s)	39, 534
BsiSI	CCGG	3 cut(s)	159, 176, 1256
BslI	CCNNNNNNNGG	4 cut(s)	128, 318, 785, 890
BsmAI	GTCTC	1 cut(s)	272
BsnI	GGCC	3 cut(s)	28, 237, 1010
Bsp1286I	GDGCHC	2 cut(s)	39, 534
Bsp13I	TCCGGA	1 cut(s)	1255
Bsp143I	GATC	2 cut(s)	718, 907
Bsp1720I	GCTNAGC	1 cut(s)	1176
BspACI	CCGC	6 cut(s)	40, 43, 167, 275, 278, 940
BspANI	GGCC	3 cut(s)	28, 237, 1010
BspCNI	CTCAG	5 cut(s)	22, 98, 282, 1168, 1239
BspEI	TCCGGA	1 cut(s)	1255
BspLI	GGNNCC	5 cut(s)	99, 323, 509, 647, 882
BspQI	GCTCTTC	2 cut(s)	522, 598
BspT107I	GGYRCC	2 cut(s)	507, 645
BsrBI	CCGCTC	1 cut(s)	275
BsrDI	GCAATG	2 cut(s)	825, 1085
BsrI	ACTGG	3 cut(s)	170, 470, 511
BssECI	CCNNGG	1 cut(s)	1011
BssMI	GATC	2 cut(s)	718, 907
BssT1I	CCWWGG	1 cut(s)	1011
Bst6I	CTCTTC	4 cut(s)	522, 576, 598, 855
BstBAI	YACGTR	1 cut(s)	848
BstDEI	CTNAG	6 cut(s)	9, 85, 127, 269, 1176, 1226
BstF5I	GGATG	2 cut(s)	151, 334
BstKTI	GATC	2 cut(s)	721, 910
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	2 cut(s)	718, 907
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 155, 632, 1186
BstNSI	RCATGY	1 cut(s)	1102
BstV1I	GCAGC	4 cut(s)	605, 776, 961, 964
BsuRI	GGCC	3 cut(s)	28, 237, 1010
BtsCI	GGATG	2 cut(s)	151, 334
BtsIMutI	CAGTG	1 cut(s)	518
Cfr13I	GGNCC	4 cut(s)	26, 97, 236, 322
Csp6I	GTAC	6 cut(s)	463, 484, 508, 646, 865, 926
CviAII	CATG	5 cut(s)	313, 597, 944, 1099, 1264
CviQI	GTAC	6 cut(s)	463, 484, 508, 646, 865, 926
DdeI	CTNAG	6 cut(s)	9, 85, 127, 269, 1176, 1226
DpnI	GATC	2 cut(s)	720, 909
DpnII	GATC	2 cut(s)	718, 907
EaeI	YGGCCR	1 cut(s)	1008
Eam1104I	CTCTTC	4 cut(s)	522, 576, 598, 855
EarI	CTCTTC	4 cut(s)	522, 576, 598, 855
EciI	GGCGGA	2 cut(s)	29, 929
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	1011
Eco24I	GRGCYC	1 cut(s)	39
Eco47I	GGWCC	2 cut(s)	97, 322
Eco53kI	GAGCTC	1 cut(s)	37
Eco72I	CACGTG	1 cut(s)	848
EcoICRI	GAGCTC	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRI	GAATTC	2 cut(s)	402, 1021
EcoT14I	CCWWGG	1 cut(s)	1011
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	1011
FaeI	CATG	5 cut(s)	316, 600, 947, 1102, 1267
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FatI	CATG	5 cut(s)	312, 596, 943, 1098, 1263
FauI	CCCGC	1 cut(s)	271
FauNDI	CATATG	2 cut(s)	431, 457
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	7 cut(s)	43, 167, 276, 594, 765, 975, 978
FokI	GGATG	2 cut(s)	158, 321
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	7 cut(s)	43, 167, 276, 594, 765, 975, 978
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	7 cut(s)	43, 167, 276, 594, 765, 975, 978
GsaI	CCCAGC	1 cut(s)	401
HaeIII	GGCC	3 cut(s)	28, 237, 1010
HapII	CCGG	3 cut(s)	159, 176, 1256
Hin1II	CATG	5 cut(s)	316, 600, 947, 1102, 1267
HincII	GTYRAC	1 cut(s)	962
HindII	GTYRAC	1 cut(s)	962
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	7 cut(s)	265, 355, 425, 451, 472, 734, 1139
HpaII	CCGG	3 cut(s)	159, 176, 1256
HphI	GGTGA	3 cut(s)	752, 1118, 1118
Hpy166II	GTNNAC	6 cut(s)	20, 325, 437, 450, 471, 962
Hpy188I	TCNGA	9 cut(s)	34, 88, 112, 272, 718, 1158, 1202, 1213, 1249
Hpy188III	TCNNGA	5 cut(s)	95, 709, 905, 1228, 1256
Hpy8I	GTNNAC	6 cut(s)	20, 325, 437, 450, 471, 962
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	6 cut(s)	111, 223, 497, 517, 547, 789
HpyCH4IV	ACGT	1 cut(s)	847
HpyCH4V	TGCA	6 cut(s)	593, 635, 676, 701, 764, 830
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 155, 632, 1186
HpyF3I	CTNAG	6 cut(s)	9, 85, 127, 269, 1176, 1226
HpySE526I	ACGT	1 cut(s)	847
Hsp92II	CATG	5 cut(s)	316, 600, 947, 1102, 1267
Kpn2I	TCCGGA	1 cut(s)	1255
KpnI	GGTACC	2 cut(s)	511, 649
Kzo9I	GATC	2 cut(s)	718, 907
LguI	GCTCTTC	2 cut(s)	522, 598
LmnI	GCTCC	2 cut(s)	34, 42
Lsp1109I	GCAGC	4 cut(s)	605, 776, 961, 964
LweI	GCATC	2 cut(s)	136, 984
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	1 cut(s)	847
MaeIII	GTNAC	3 cut(s)	540, 848, 893
MalI	GATC	2 cut(s)	720, 909
MbiI	CCGCTC	1 cut(s)	275
MboI	GATC	2 cut(s)	718, 907
MboII	GAAGA	8 cut(s)	130, 539, 593, 615, 872, 1003, 1054, 1099
MfeI	CAATTG	1 cut(s)	783
MhlI	GDGCHC	2 cut(s)	39, 534
MlyI	GAGTC	3 cut(s)	274, 445, 466
MmeI	TCCRAC	1 cut(s)	12
MroI	TCCGGA	1 cut(s)	1255
MseI	TTAA	3 cut(s)	116, 341, 1115
MspI	CCGG	3 cut(s)	159, 176, 1256
MunI	CAATTG	1 cut(s)	783
MwoI	GCNNNNNNNGC	4 cut(s)	34, 155, 632, 1186
NdeI	CATATG	2 cut(s)	431, 457
NdeII	GATC	2 cut(s)	718, 907
NlaIII	CATG	5 cut(s)	316, 600, 947, 1102, 1267
NlaIV	GGNNCC	5 cut(s)	99, 323, 509, 647, 882
NmuCI	GTSAC	1 cut(s)	848
NspI	RCATGY	1 cut(s)	1102
PciSI	GCTCTTC	2 cut(s)	522, 598
PfeI	GAWTC	4 cut(s)	355, 425, 734, 1139
PflMI	CCANNNNNTGG	1 cut(s)	318
PkrI	GCNGC	7 cut(s)	44, 168, 277, 595, 766, 976, 979
PleI	GAGTC	3 cut(s)	273, 445, 466
PmaCI	CACGTG	1 cut(s)	848
PmlI	CACGTG	1 cut(s)	848
PpsI	GAGTC	3 cut(s)	273, 445, 466
Ppu21I	YACGTR	1 cut(s)	848
PpuMI	RGGWCCY	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	97
PspCI	CACGTG	1 cut(s)	848
PspFI	CCCAGC	1 cut(s)	397
PspN4I	GGNNCC	5 cut(s)	99, 323, 509, 647, 882
PspPI	GGNCC	4 cut(s)	26, 97, 236, 322
PspPPI	RGGWCCY	1 cut(s)	97
RsaI	GTAC	6 cut(s)	464, 485, 509, 647, 866, 927
RsaNI	GTAC	6 cut(s)	463, 484, 508, 646, 865, 926
SacI	GAGCTC	1 cut(s)	39
SapI	GCTCTTC	2 cut(s)	522, 598
SaqAI	TTAA	3 cut(s)	116, 341, 1115
SatI	GCNGC	7 cut(s)	43, 167, 276, 594, 765, 975, 978
Sau3AI	GATC	2 cut(s)	718, 907
Sau96I	GGNCC	4 cut(s)	26, 97, 236, 322
ScaI	AGTACT	1 cut(s)	927
SchI	GAGTC	3 cut(s)	274, 445, 466
SduI	GDGCHC	2 cut(s)	39, 534
SfaNI	GCATC	2 cut(s)	136, 984
SinI	GGWCC	2 cut(s)	97, 322
SsiI	CCGC	6 cut(s)	40, 43, 167, 275, 278, 940
SspMI	CTAG	1 cut(s)	23
SstI	GAGCTC	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	1011
TaiI	ACGT	1 cut(s)	850
TaqI	TCGA	2 cut(s)	141, 667
TatI	WGTACW	2 cut(s)	864, 925
TauI	GCSGC	3 cut(s)	45, 169, 278
TfiI	GAWTC	4 cut(s)	355, 425, 734, 1139
Tru1I	TTAA	3 cut(s)	116, 341, 1115
Tru9I	TTAA	3 cut(s)	116, 341, 1115
TscAI	CASTG	1 cut(s)	518
TseFI	GTSAC	1 cut(s)	848
TseI	GCWGC	4 cut(s)	593, 764, 974, 977
Tsp45I	GTSAC	1 cut(s)	848
TspDTI	ATGAA	5 cut(s)	483, 873, 1043, 1100, 1182
TspRI	CASTG	1 cut(s)	518
Van91I	CCANNNNNTGG	1 cut(s)	318
VpaK11BI	GGWCC	2 cut(s)	97, 322
XapI	RAATTY	6 cut(s)	186, 402, 725, 770, 1021, 1032
XceI	RCATGY	1 cut(s)	1102
XcmI	CCANNNNNNNNNTGG	1 cut(s)	462
XmiI	GTMKAC	1 cut(s)	19
XspI	CTAG	1 cut(s)	23
ZrmI	AGTACT	1 cut(s)	927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.