Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001292

Physical Location & Seq

Genomic Coordinates Reverse (-)

15849080 .. 15849583

Gene Structure 504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G140000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAGGAACATAGAGTGCGCTGAGAAGGTGGATTTTTCAAAGATTTACAGTCGAATTCTGCAGATTGCCATGACAGAGAAGCTGAGCAATGCCAAGATGCCTAAAAGTATTTTTGTGTTCACATACAAGGAATTTGACAAGGCCTCTAAGAACGATTGGGCGCTGGATTATAAGGACGCTTGGAATAATTACAAAAAGAGAGGGTATGCAACTGTGCCGCAGTTGGTGTTTTGGAATCTTAAGGACTCAATTGCTGCGCTTGAGGTCATTGGCAGCCCTGTGAAGATTCACAATGCAGGGATAATTATCACTGGGTTTTCCAACACTCTGCTCAGGCTGAGGCTTACTCCAAATGCTGAGGACGTGATGAAATGGGCGGTTTCAACCGAAGAGCTGAGAAGCCTCTTTATAGTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

140

Amino Acids

16.0

Weight (kDa)

9.16

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001292)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04500 FvH4_2g04520 FvH4_2g04540 FvH4_2g04550
malus_domestica	MD05G1095800.v1.1 MD05G1215400.v1.1
prunus_persica	Prupe.8G139800_v2.0.a1 Prupe.8G139900_v2.0.a1 Prupe.8G140000_v2.0.a1 Prupe.8G140100_v2.0.a1 Prupe.8G140200_v2.0.a1
pyrus_communis	pycom05g09450
rosa_chinensis	RchiOBHm_Chr6g0254021 RchiOBHm_Chr6g0254031 RchiOBHm_Chr6g0254051 RchiOBHm_Chr6g0254071 RchiOBHm_Chr6g0254131
rosa_laevigata	RLG00000014941 RLG00000014945 RLG00000014947 RLG00000014948 RLG00000028713
rosa_multiflora	Rmu_co8068492.1_g000001 Rmu_co8292957.1_g000001 Rmu_sc0000010.1_g000029 Rmu_sc0001716.1_g000022 Rmu_sc0001716.1_g000026 Rmu_sc0001716.1_g000030
rosa_roxburghii	Rroxscaffold_7G00211140 Rroxscaffold_7G00211260 Rroxscaffold_7G00211290 Rroxscaffold_7G00211300
rosa_rugosa	Rorug05G0549000
rosa_samantha	Rh6AG065500 Rh6AG065600 Rh6AG065800 Rh6AG066400 Rh6BG058400 Rh6BG058600 Rh6BG059500 Rh6CG058500 Rh6CG058600 Rh6CG058700 Rh6CG058800 Rh6CG059100 Rh6CG059200 Rh6DG055300 Rh6DG055400 Rh6DG055500 Rh6DG055600 Rh6DG056000 Rh6DG056100
rosa_wichuraiana	Rw6G005770 Rw6G005790 Rw6G005830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
AciI	CCGC	2 cut(s)	218, 377
AcsI	RAATTY	2 cut(s)	54, 131
AflII	CTTAAG	1 cut(s)	239
AgsI	TTSAA	2 cut(s)	39, 384
AjiI	CACGTC	1 cut(s)	364
AluBI	AGCT	2 cut(s)	82, 394
AluI	AGCT	2 cut(s)	82, 394
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	2 cut(s)	254, 273
ApoI	RAATTY	2 cut(s)	54, 131
AspLEI	GCGC	3 cut(s)	20, 163, 259
BbvCI	CCTCAGC	2 cut(s)	338, 357
BbvI	GCAGC	2 cut(s)	241, 285
BfmI	CTRYAG	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	164
BfrI	CTTAAG	1 cut(s)	239
BisI	GCNGC	3 cut(s)	218, 255, 274
BlpI	GCTNAGC	1 cut(s)	83
BlsI	GCNGC	3 cut(s)	219, 256, 275
BmgBI	CACGTC	1 cut(s)	364
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	87
BmuI	ACTGGG	1 cut(s)	321
BplI	GAGNNNNNCTC	2 cut(s)	331, 363
Bpu10I	CCTNAGC	3 cut(s)	332, 338, 357
Bpu1102I	GCTNAGC	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	281
BsaBI	GATNNNNATC	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	305
BseJI	GATNNNNATC	1 cut(s)	305
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	6 cut(s)	12, 74, 329, 346, 348, 386
BseNI	ACTGG	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	241, 285
BshFI	GGCC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	143
Bsp1720I	GCTNAGC	1 cut(s)	83
BspACI	CCGC	2 cut(s)	218, 377
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	6 cut(s)	13, 75, 330, 345, 349, 387
BspMAI	CTGCAG	1 cut(s)	63
BspQI	GCTCTTC	1 cut(s)	384
BspTI	CTTAAG	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	316
Bst4CI	ACNGT	2 cut(s)	50, 214
Bst6I	CTCTTC	1 cut(s)	384
BstAFI	CTTAAG	1 cut(s)	239
BstDEI	CTNAG	7 cut(s)	21, 83, 147, 332, 338, 357, 395
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	3 cut(s)	20, 163, 259
BstSFI	CTRYAG	1 cut(s)	59
BstV1I	GCAGC	2 cut(s)	241, 285
BsuRI	GGCC	1 cut(s)	143
BtrI	CACGTC	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	309
CfoI	GCGC	3 cut(s)	20, 163, 259
CseI	GACGC	1 cut(s)	185
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	7 cut(s)	82, 143, 276, 337, 343, 394, 402
CviKI_1	RGCY	7 cut(s)	82, 143, 276, 337, 343, 394, 402
DdeI	CTNAG	7 cut(s)	21, 83, 147, 332, 338, 357, 395
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco147I	AGGCCT	1 cut(s)	143
EcoRI	GAATTC	1 cut(s)	54
FaeI	CATG	1 cut(s)	73
FaiI	YATR	6 cut(s)	11, 71, 124, 171, 207, 410
FatI	CATG	1 cut(s)	69
Fnu4HI	GCNGC	3 cut(s)	218, 255, 274
Fsp4HI	GCNGC	3 cut(s)	218, 255, 274
GlaI	GCGC	3 cut(s)	19, 162, 258
GluI	GCNGC	3 cut(s)	218, 255, 274
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	143
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	3 cut(s)	20, 163, 259
Hin1II	CATG	1 cut(s)	73
Hin6I	GCGC	3 cut(s)	18, 161, 257
HinP1I	GCGC	3 cut(s)	18, 161, 257
HinfI	GANTC	3 cut(s)	235, 245, 286
Hpy166II	GTNNAC	1 cut(s)	120
Hpy8I	GTNNAC	1 cut(s)	120
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	2 cut(s)	50, 214
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	3 cut(s)	61, 209, 296
HpyF3I	CTNAG	7 cut(s)	21, 83, 147, 332, 338, 357, 395
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	1 cut(s)	73
HspAI	GCGC	3 cut(s)	18, 161, 257
LguI	GCTCTTC	1 cut(s)	384
LpnPI	CCDG	5 cut(s)	149, 282, 291, 297, 319
Lsp1109I	GCAGC	2 cut(s)	241, 285
LweI	GCATC	1 cut(s)	87
MaeII	ACGT	1 cut(s)	363
MboII	GAAGA	2 cut(s)	295, 401
MfeI	CAATTG	1 cut(s)	249
MluCI	AATT	5 cut(s)	54, 131, 187, 249, 303
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	6 cut(s)	154, 194, 256, 333, 352, 413
MseI	TTAA	1 cut(s)	240
MspCI	CTTAAG	1 cut(s)	239
MunI	CAATTG	1 cut(s)	249
NlaIII	CATG	1 cut(s)	73
PceI	AGGCCT	1 cut(s)	143
PciSI	GCTCTTC	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	235, 286
PkrI	GCNGC	3 cut(s)	219, 256, 275
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PsiI	TTATAA	1 cut(s)	171
PstI	CTGCAG	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	3 cut(s)	218, 255, 274
SchI	GAGTC	1 cut(s)	239
SetI	ASST	5 cut(s)	30, 84, 267, 366, 396
SfaNI	GCATC	1 cut(s)	87
SfcI	CTRYAG	1 cut(s)	59
SmlI	CTYRAG	2 cut(s)	239, 260
SmoI	CTYRAG	2 cut(s)	239, 260
Sse9I	AATT	5 cut(s)	54, 131, 187, 249, 303
SseBI	AGGCCT	1 cut(s)	143
SsiI	CCGC	2 cut(s)	218, 377
StuI	AGGCCT	1 cut(s)	143
TaaI	ACNGT	2 cut(s)	50, 214
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	1 cut(s)	52
TasI	AATT	5 cut(s)	54, 131, 187, 249, 303
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	2 cut(s)	235, 286
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	1 cut(s)	316
TseI	GCWGC	2 cut(s)	254, 273
TspDTI	ATGAA	1 cut(s)	383
TspRI	CASTG	1 cut(s)	316
Vha464I	CTTAAG	1 cut(s)	239
XapI	RAATTY	2 cut(s)	54, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.