Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8292957.1

Orthogroup ID

OG0001292

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 847

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8292957.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggagaagcctaacaaagaagcgttctacaaatccctcttgtgggtccacaaaaaccacccaaaaaccctagctctgaatgtcatggttttcggggctttaggttggttcgatgatctgttggaaattctcaaaagggttttggaggactccattcatagacttacaaacccagaaaagaaggatgagctaattatatcaaactacaggaggaggatatcaaactataggagcaatcgtttgggatacgactatgaggaagaaagtgatgacgatgatgatgacgaaaagaagaccgcagaaatagcaccaaaagatgacattgcaaaggctagaattgcagttcagaggtaccaaaacgactcagattatcgattcttacacgatcggatatcagacttgtttgcagaggtgttgaaatcagatctgaggttcttggcatcaggtgcaattaaatcgataagctttgcttccaagttttgtccttcaattgattccccttacgactacgaaaccctaatctgtgaaagcatagcaaagaaaatgttcccacgcaataatcatatagagtacaaatatgttgaagacccttattacacttacagggttcgtaatcgtttgggggaccaagtactaattcctctacgtgaagccatagagaaggtgaagaagccatcaattgaaaccgggaaagcattgattgctctggaaacatataggaagatattcgggccggagtcaaaagaagaaggaggcagcatagtgctgtttcatcattgcatgaagctaatcgagttcttttcaccgaaggaaaatatggtcggcgtgtttgggaatttaagcatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

282

Amino Acids

32.9

Weight (kDa)

6.21

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001292)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04500 FvH4_2g04520 FvH4_2g04540 FvH4_2g04550
malus_domestica	MD05G1095800.v1.1 MD05G1215400.v1.1
prunus_persica	Prupe.8G139800_v2.0.a1 Prupe.8G139900_v2.0.a1 Prupe.8G140000_v2.0.a1 Prupe.8G140100_v2.0.a1 Prupe.8G140200_v2.0.a1
pyrus_communis	pycom05g09450
rosa_chinensis	RchiOBHm_Chr6g0254021 RchiOBHm_Chr6g0254031 RchiOBHm_Chr6g0254051 RchiOBHm_Chr6g0254071 RchiOBHm_Chr6g0254131
rosa_laevigata	RLG00000014941 RLG00000014945 RLG00000014947 RLG00000014948 RLG00000028713
rosa_multiflora	Rmu_co8068492.1_g000001 Rmu_co8292957.1_g000001 Rmu_sc0000010.1_g000029 Rmu_sc0001716.1_g000022 Rmu_sc0001716.1_g000026 Rmu_sc0001716.1_g000030
rosa_roxburghii	Rroxscaffold_7G00211140 Rroxscaffold_7G00211260 Rroxscaffold_7G00211290 Rroxscaffold_7G00211300
rosa_rugosa	Rorug05G0549000
rosa_samantha	Rh6AG065500 Rh6AG065600 Rh6AG065800 Rh6AG066400 Rh6BG058400 Rh6BG058600 Rh6BG059500 Rh6CG058500 Rh6CG058600 Rh6CG058700 Rh6CG058800 Rh6CG059100 Rh6CG059200 Rh6DG055300 Rh6DG055400 Rh6DG055500 Rh6DG055600 Rh6DG056000 Rh6DG056100
rosa_wichuraiana	Rw6G005770 Rw6G005790 Rw6G005830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	351
AccB1I	GGYRCC	1 cut(s)	351
AciI	CCGC	1 cut(s)	297
AcsI	RAATTY	2 cut(s)	126, 835
AfaI	GTAC	3 cut(s)	353, 572, 633
AfiI	CCNNNNNNNGG	2 cut(s)	42, 43
AgsI	TTSAA	4 cut(s)	418, 489, 584, 683
AjuI	GAANNNNNNNTTGG	2 cut(s)	621, 653
AluBI	AGCT	4 cut(s)	74, 190, 465, 787
AluI	AGCT	4 cut(s)	74, 190, 465, 787
AoxI	GGCC	1 cut(s)	731
ApeKI	GCWGC	1 cut(s)	756
ApoI	RAATTY	2 cut(s)	126, 835
Asp700I	GAANNNNTTC	2 cut(s)	545, 725
Asp718I	GGTACC	1 cut(s)	351
AspS9I	GGNCC	3 cut(s)	46, 625, 731
AsuC2I	CCSGG	1 cut(s)	688
AsuHPI	GGTGA	2 cut(s)	676, 795
AvaII	GGWCC	2 cut(s)	46, 625
BanI	GGYRCC	1 cut(s)	351
BbsI	GAAGAC	2 cut(s)	299, 591
BbvI	GCAGC	1 cut(s)	768
BccI	CCATC	1 cut(s)	682
BcgI	CGANNNNNNTGC	2 cut(s)	438, 472
BciVI	GTATCC	1 cut(s)	239
BcnI	CCSGG	1 cut(s)	688
BfaI	CTAG	2 cut(s)	71, 333
BfmI	CTRYAG	2 cut(s)	205, 226
BfuI	GTATCC	1 cut(s)	239
BglII	AGATCT	1 cut(s)	424
BisI	GCNGC	1 cut(s)	757
BlsI	GCNGC	1 cut(s)	758
BmcAI	AGTACT	1 cut(s)	633
Bme1390I	CCNGG	1 cut(s)	688
Bme18I	GGWCC	2 cut(s)	46, 625
BmgT120I	GGNCC	3 cut(s)	46, 625, 731
BmiI	GGNNCC	3 cut(s)	47, 353, 626
BmrFI	CCNGG	1 cut(s)	688
BmsI	GCATC	1 cut(s)	449
BpiI	GAAGAC	2 cut(s)	299, 591
BpuMI	CCSGG	1 cut(s)	688
Bsa29I	ATCGAT	2 cut(s)	373, 458
BsaAI	YACGTR	1 cut(s)	647
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 43
Bse3DI	GCAATG	2 cut(s)	321, 775
BseCI	ATCGAT	2 cut(s)	373, 458
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	2 cut(s)	42, 43
BseMI	GCAATG	2 cut(s)	321, 775
BseMII	CTCAG	2 cut(s)	378, 419
BseRI	GAGGAG	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	768
Bsh1285I	CGRYCG	1 cut(s)	388
BshFI	GGCC	1 cut(s)	733
BshNI	GGYRCC	1 cut(s)	351
BshVI	ATCGAT	2 cut(s)	373, 458
BsiEI	CGRYCG	1 cut(s)	388
BsiSI	CCGG	2 cut(s)	687, 734
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	2 cut(s)	42, 43
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	1 cut(s)	733
Bsp143I	GATC	3 cut(s)	115, 385, 424
BspACI	CCGC	1 cut(s)	297
BspANI	GGCC	1 cut(s)	733
BspCNI	CTCAG	2 cut(s)	377, 420
BspDI	ATCGAT	2 cut(s)	373, 458
BspLI	GGNNCC	3 cut(s)	47, 353, 626
BspT107I	GGYRCC	1 cut(s)	351
BsrDI	GCAATG	2 cut(s)	321, 775
BssMI	GATC	3 cut(s)	115, 385, 424
BstAPI	GCANNNNNTGC	2 cut(s)	446, 701
BstBAI	YACGTR	1 cut(s)	647
BstDEI	CTNAG	2 cut(s)	364, 428
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	3 cut(s)	118, 388, 427
BstMBI	GATC	3 cut(s)	115, 385, 424
BstMCI	CGRYCG	1 cut(s)	388
BstMWI	GCNNNNNNNGC	4 cut(s)	305, 338, 446, 701
BstSCI	CCNGG	1 cut(s)	686
BstSFI	CTRYAG	2 cut(s)	205, 226
BstV1I	GCAGC	1 cut(s)	768
BstV2I	GAAGAC	2 cut(s)	299, 591
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
Bsu15I	ATCGAT	2 cut(s)	373, 458
BsuI	GTATCC	1 cut(s)	239
BsuRI	GGCC	1 cut(s)	733
BsuTUI	ATCGAT	2 cut(s)	373, 458
BtsCI	GGATG	1 cut(s)	190
Cfr13I	GGNCC	3 cut(s)	46, 625, 731
ClaI	ATCGAT	2 cut(s)	373, 458
Csp6I	GTAC	3 cut(s)	352, 571, 632
CviAII	CATG	2 cut(s)	85, 781
CviQI	GTAC	3 cut(s)	352, 571, 632
DdeI	CTNAG	2 cut(s)	364, 428
DpnI	GATC	3 cut(s)	117, 387, 426
DpnII	GATC	3 cut(s)	115, 385, 424
Eco32I	GATATC	2 cut(s)	219, 393
Eco47I	GGWCC	2 cut(s)	46, 625
EcoRV	GATATC	2 cut(s)	219, 393
FaeI	CATG	2 cut(s)	88, 784
FalI	AAGNNNNNCTT	2 cut(s)	454, 486
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	2 cut(s)	84, 780
Fnu4HI	GCNGC	1 cut(s)	757
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	757
FspBI	CTAG	2 cut(s)	71, 333
GluI	GCNGC	1 cut(s)	757
HaeIII	GGCC	1 cut(s)	733
HapII	CCGG	2 cut(s)	687, 734
Hin1II	CATG	2 cut(s)	88, 784
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	5 cut(s)	149, 362, 375, 494, 737
HpaII	CCGG	2 cut(s)	687, 734
HphI	GGTGA	2 cut(s)	676, 795
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	7 cut(s)	78, 348, 367, 390, 397, 424, 429
Hpy188III	TCNNGA	1 cut(s)	707
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	5 cut(s)	175, 495, 655, 743, 802
HpyCH4IV	ACGT	1 cut(s)	646
HpyCH4V	TGCA	5 cut(s)	326, 341, 407, 449, 780
HpyF10VI	GCNNNNNNNGC	4 cut(s)	305, 338, 446, 701
HpyF3I	CTNAG	2 cut(s)	364, 428
HpySE526I	ACGT	1 cut(s)	646
Hsp92II	CATG	2 cut(s)	88, 784
KpnI	GGTACC	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	115, 385, 424
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	7 cut(s)	186, 193, 429, 589, 692, 700, 747
Lsp1109I	GCAGC	1 cut(s)	768
LweI	GCATC	1 cut(s)	449
MaeI	CTAG	2 cut(s)	71, 333
MaeII	ACGT	1 cut(s)	646
MalI	GATC	3 cut(s)	117, 387, 426
MboI	GATC	3 cut(s)	115, 385, 424
MboII	GAAGA	6 cut(s)	272, 304, 596, 679, 733, 758
MfeI	CAATTG	2 cut(s)	489, 678
MflI	RGATCY	1 cut(s)	424
MluCI	AATT	8 cut(s)	126, 192, 336, 450, 489, 636, 678, 835
MlyI	GAGTC	3 cut(s)	143, 356, 746
MmeI	TCCRAC	1 cut(s)	102
MroXI	GAANNNNTTC	2 cut(s)	545, 725
MseI	TTAA	2 cut(s)	453, 839
MspI	CCGG	2 cut(s)	687, 734
MspR9I	CCNGG	1 cut(s)	688
MunI	CAATTG	2 cut(s)	489, 678
MwoI	GCNNNNNNNGC	4 cut(s)	305, 338, 446, 701
NciI	CCSGG	1 cut(s)	688
NdeII	GATC	3 cut(s)	115, 385, 424
NlaIII	CATG	2 cut(s)	88, 784
NlaIV	GGNNCC	3 cut(s)	47, 353, 626
PdmI	GAANNNNTTC	2 cut(s)	545, 725
PfeI	GAWTC	2 cut(s)	375, 494
PkrI	GCNGC	1 cut(s)	758
Ple19I	CGATCG	1 cut(s)	388
PleI	GAGTC	3 cut(s)	143, 356, 745
PpsI	GAGTC	3 cut(s)	143, 356, 745
Ppu21I	YACGTR	1 cut(s)	647
PspN4I	GGNNCC	3 cut(s)	47, 353, 626
PspPI	GGNCC	3 cut(s)	46, 625, 731
PsuI	RGATCY	1 cut(s)	424
PvuI	CGATCG	1 cut(s)	388
RsaI	GTAC	3 cut(s)	353, 572, 633
RsaNI	GTAC	3 cut(s)	352, 571, 632
SaqAI	TTAA	2 cut(s)	453, 839
SatI	GCNGC	1 cut(s)	757
Sau3AI	GATC	3 cut(s)	115, 385, 424
Sau96I	GGNCC	3 cut(s)	46, 625, 731
ScaI	AGTACT	1 cut(s)	633
SchI	GAGTC	3 cut(s)	143, 356, 746
ScrFI	CCNGG	1 cut(s)	688
SfaNI	GCATC	1 cut(s)	449
SfcI	CTRYAG	2 cut(s)	205, 226
SinI	GGWCC	2 cut(s)	46, 625
Sse9I	AATT	8 cut(s)	126, 192, 336, 450, 489, 636, 678, 835
SsiI	CCGC	1 cut(s)	297
SspMI	CTAG	2 cut(s)	71, 333
StyD4I	CCNGG	1 cut(s)	686
TaiI	ACGT	1 cut(s)	649
TaqI	TCGA	4 cut(s)	111, 373, 458, 792
TasI	AATT	8 cut(s)	126, 192, 336, 450, 489, 636, 678, 835
TatI	WGTACW	2 cut(s)	570, 631
TfiI	GAWTC	2 cut(s)	375, 494
Tru1I	TTAA	2 cut(s)	453, 839
Tru9I	TTAA	2 cut(s)	453, 839
TseI	GCWGC	1 cut(s)	756
TspDTI	ATGAA	3 cut(s)	146, 761, 797
VpaK11BI	GGWCC	2 cut(s)	46, 625
XapI	RAATTY	2 cut(s)	126, 835
XmnI	GAANNNNTTC	2 cut(s)	545, 725
XspI	CTAG	2 cut(s)	71, 333
ZrmI	AGTACT	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.