RLG00000014948

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001292
Physical Location & Seq
Reverse (-)
59858914 .. 59860596
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014948

Sequence Viewer

Length: 1482 bp
ATGACAACCTCAGAATATCAGGACCCTTCGCTCTCAGACTTAAAGCCAATCTTAGAATTTATCTTCGAGGATGCGAATTACGCCGGAAAGCCTGCTGTTCCGGCAGAGACAATTTCCAAATATAAGCTAGATGACAGAGGGGAAACGGCTTGGAAGGTTGGCCCTCTCAAAACCCTCAAGCTTATATTGAGTCTCAGAGCGGCCGGGAAGCTTGACGATGATGGGTTTTACAGAACCATGTTGTGGGTCCACAAAAACCATCCTTTAACCCTAGCTTTGAATCTCAAGGTTTTTGGGGATTTAGGGTGTTCAAAGATGTGCTGGGAATTCTCCATAAGGTTTTGGAGGAATCCATATGTGGACATTATCTGTGGACTCCATATGGGTACTGGTGGACTCCATATGGATACTATTTTTCATTCCTTGAAGGGTGAGATTGAAAACATCAGTTTTGCAGCCAAATTTTGCCCTTCAATTGGTTCCAAATATGATAAAGAAACCTTGATATGTGAAGTCATTGCAAAGAGAATTTTCCCACGTGACGATTATGAAGAGTACAAAGATATTTTGGAACCCCATTATGGTTACAGGGTTCGTGATCGTTTGAGGAAGCAAGTACTTGTTCCCCTCCGCCATGCCCTAATGCCAAGTCAACTGAACAATGCTGCTGCGAGAAAATTGAAGATGCCACCCGAAACGGCCAAGGCTTTGAATTCTATGAAAATTTATAGGAAGATTATGTATTATGGGGGAAGCTATCAATTCAAGCAATGTGTGAAGATTGTGGGCATGTATGGTGATGGATTAAAACTTCCTCACCAAGTAATAGATTCCTTGAACAATGGTCAGAGTAGTGATGAAATTGCTGAGCTTCAATGGCAAAGACTAATCCGAGAGTTGTCAGACAAAGGGAAGCTCAGGAATTGTATTGCTGTGTGTGACATTCCGGAAAGCATGAGAGGGACAACCAACGAAACAGTCTGCATTGCAACGGGGTTATTGATTTCGGAACTGAGTGAATATCCATGGAAAGGAAAGGTTTTCTCTTTCAGTGATTTTCCCAAGCTTCATAAGTTTGAAGGAGAGAATCTTCGATCGAAATGTGAGTTCATGAAGCAGCATATGGAGTCTGCAAAGAAACTGAATTTCAGAGAGATTTACGACAGAGTGTTGGAGATTGCCATCAAAGAAAAGCTAGGGCACCATCAGATTCCGCAGCGGATTTTTGTGTTCACAGACAAGGATTTTGACATGGCATTCAAAAACGATTGGTTTGATGATTATGCAAAGGCTCTTTATGATTACAAAAATGGAGGGTATTTGTTTAATGTGCCAGACATGGTATTATGGAATCTTAAGGGTCCCATTTCTAAGCCAATGGCCATTTATAGCCTAGTGAAGGACCAGGATGTGGGGATGATTATTACCGGGTTTTCTAGCAACCTGCTTAGGTTGTTCTTGAATGCAGAGTCGGATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

494

Amino Acids

56.71

Weight (kDa)

8.45

Isoelectric Point (pI)

32.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 37 - 100 4e-14 Domain of unknown function (DUF2828)
DUF2828 PF11443 144 - 306 8.2e-25 Domain of unknown function (DUF2828)
DUF7788 PF25043 308 - 490 8.3e-40 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1452
AccB1I GGYRCC 1 cut(s) 1200
AccB7I CCANNNNNTGG 2 cut(s) 243, 1411
AccBSI CCGCTC 1 cut(s) 200
AccIII TCCGGA 1 cut(s) 946
AciI CCGC 4 cut(s) 200, 631, 1214, 1219
AcoI YGGCCR 3 cut(s) 201, 699, 1380
AcsI RAATTY 7 cut(s) 56, 326, 461, 528, 712, 723, 1144
AcvI CACGTG 1 cut(s) 539
AfaI GTAC 3 cut(s) 388, 557, 618
AfiI CCNNNNNNNGG 6 cut(s) 243, 476, 581, 1031, 1399, 1411
AflII CTTAAG 1 cut(s) 1355
AjnI CCWGG 1 cut(s) 1404
AluBI AGCT 9 cut(s) 127, 181, 211, 275, 756, 871, 916, 1066, 1195
AluI AGCT 9 cut(s) 127, 181, 211, 275, 756, 871, 916, 1066, 1195
Alw26I GTCTC 2 cut(s) 101, 197
Aor13HI TCCGGA 1 cut(s) 946
AoxI GGCC 4 cut(s) 160, 201, 699, 1380
ApeKI GCWGC 5 cut(s) 455, 665, 668, 1117, 1216
ApoI RAATTY 7 cut(s) 56, 326, 461, 528, 712, 723, 1144
ArsI GACNNNNNNTTYG 2 cut(s) 1229, 1261
AspS9I GGNCC 5 cut(s) 22, 161, 247, 1361, 1402
AsuC2I CCSGG 2 cut(s) 205, 1429
AsuHPI GGTGA 3 cut(s) 443, 809, 809
AvaII GGWCC 4 cut(s) 22, 247, 1361, 1402
BaeGI GKGCMC 1 cut(s) 1203
BalI TGGCCA 1 cut(s) 1382
BanI GGYRCC 1 cut(s) 1200
BbrPI CACGTG 1 cut(s) 539
BbvI GCAGC 5 cut(s) 467, 652, 655, 1129, 1228
BccI CCATC 5 cut(s) 215, 267, 794, 1190, 1212
BceAI ACGGC 2 cut(s) 162, 714
BciT130I CCWGG 1 cut(s) 1406
BciVI GTATCC 1 cut(s) 400
BcnI CCSGG 2 cut(s) 205, 1429
BcoDI GTCTC 2 cut(s) 101, 197
BfaI CTAG 5 cut(s) 128, 272, 1196, 1394, 1437
BfrI CTTAAG 1 cut(s) 1355
BfuAI ACCTGC 1 cut(s) 1452
BfuI GTATCC 1 cut(s) 400
BisI GCNGC 6 cut(s) 201, 456, 666, 669, 1118, 1217
BlpI GCTNAGC 1 cut(s) 867
BlsI GCNGC 6 cut(s) 202, 457, 667, 670, 1119, 1218
BmcAI AGTACT 1 cut(s) 618
Bme1390I CCNGG 3 cut(s) 205, 1406, 1429
Bme18I GGWCC 4 cut(s) 22, 247, 1361, 1402
BmgT120I GGNCC 5 cut(s) 22, 161, 247, 1361, 1402
BmiI GGNNCC 7 cut(s) 24, 248, 481, 573, 1202, 1362, 1363
BmrFI CCNGG 3 cut(s) 205, 1406, 1429
BmsI GCATC 2 cut(s) 61, 675
Bpu10I CCTNAGC 2 cut(s) 917, 1448
Bpu1102I GCTNAGC 1 cut(s) 867
BpuEI CTTGAG 2 cut(s) 161, 269
BpuMI CCSGG 2 cut(s) 205, 1429
BsaAI YACGTR 1 cut(s) 539
BsaBI GATNNNNATC 1 cut(s) 1181
BsaJI CCNNGG 2 cut(s) 702, 1025
BsaWI WCCGGW 1 cut(s) 946
Bsc4I CCNNNNNNNGG 6 cut(s) 243, 476, 581, 1031, 1399, 1411
Bse1I ACTGG 1 cut(s) 394
Bse3DI GCAATG 3 cut(s) 516, 776, 984
Bse8I GATNNNNATC 1 cut(s) 1181
BseAI TCCGGA 1 cut(s) 946
BseBI CCWGG 1 cut(s) 1406
BseDI CCNNGG 2 cut(s) 702, 1025
BseGI GGATG 4 cut(s) 76, 259, 1414, 1422
BseJI GATNNNNATC 1 cut(s) 1181
BseLI CCNNNNNNNGG 6 cut(s) 243, 476, 581, 1031, 1399, 1411
BseMI GCAATG 3 cut(s) 516, 776, 984
BseMII CTCAG 6 cut(s) 24, 48, 208, 858, 931, 1004
BseNI ACTGG 1 cut(s) 394
BseSI GKGCMC 1 cut(s) 1203
BseX3I CGGCCG 1 cut(s) 201
BseXI GCAGC 5 cut(s) 467, 652, 655, 1129, 1228
BseYI CCCAGC 1 cut(s) 321
Bsh1285I CGRYCG 2 cut(s) 204, 1097
BshFI GGCC 4 cut(s) 162, 203, 701, 1382
BshNI GGYRCC 1 cut(s) 1200
BsiEI CGRYCG 2 cut(s) 204, 1097
BsiSI CCGG 5 cut(s) 84, 101, 204, 947, 1428
BslFI GGGAC 2 cut(s) 976, 1347
BslI CCNNNNNNNGG 6 cut(s) 243, 476, 581, 1031, 1399, 1411
BsmAI GTCTC 2 cut(s) 101, 197
BsmFI GGGAC 2 cut(s) 976, 1347
BsmI GAATGC 2 cut(s) 1256, 1468
BsnI GGCC 4 cut(s) 162, 203, 701, 1382
Bsp1286I GDGCHC 1 cut(s) 1203
Bsp13I TCCGGA 1 cut(s) 946
Bsp143I GATC 2 cut(s) 598, 1094
Bsp1720I GCTNAGC 1 cut(s) 867
Bsp19I CCATGG 1 cut(s) 1025
BspACI CCGC 4 cut(s) 200, 631, 1214, 1219
BspANI GGCC 4 cut(s) 162, 203, 701, 1382
BspCNI CTCAG 6 cut(s) 23, 47, 207, 859, 930, 1005
BspEI TCCGGA 1 cut(s) 946
BspHI TCATGA 2 cut(s) 1110, 1478
BspLI GGNNCC 7 cut(s) 24, 248, 481, 573, 1202, 1362, 1363
BspMI ACCTGC 1 cut(s) 1452
BspT107I GGYRCC 1 cut(s) 1200
BspTI CTTAAG 1 cut(s) 1355
BsrBI CCGCTC 1 cut(s) 200
BsrDI GCAATG 3 cut(s) 516, 776, 984
BsrI ACTGG 1 cut(s) 394
BssECI CCNNGG 2 cut(s) 702, 1025
BssMI GATC 2 cut(s) 598, 1094
BssT1I CCWWGG 2 cut(s) 702, 1025
Bst2UI CCWGG 1 cut(s) 1406
Bst4CI ACNGT 1 cut(s) 979
Bst6I CTCTTC 1 cut(s) 546
BstAFI CTTAAG 1 cut(s) 1355
BstBAI YACGTR 1 cut(s) 539
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 9 cut(s) 10, 34, 52, 194, 867, 917, 1013, 1371, 1448
BstDSI CCRYGG 1 cut(s) 1025
BstENI CCTNNNNNAGG 1 cut(s) 1397
BstF5I GGATG 4 cut(s) 76, 259, 1414, 1422
BstKTI GATC 2 cut(s) 601, 1097
BstMAI GTCTC 2 cut(s) 101, 197
BstMBI GATC 2 cut(s) 598, 1094
BstMCI CGRYCG 2 cut(s) 204, 1097
BstMWI GCNNNNNNNGC 3 cut(s) 80, 101, 877
BstNI CCWGG 1 cut(s) 1406
BstNSI RCATGY 1 cut(s) 793
BstSCI CCNGG 3 cut(s) 203, 1404, 1427
BstSLI GKGCMC 1 cut(s) 1203
BstV1I GCAGC 5 cut(s) 467, 652, 655, 1129, 1228
BstZI CGGCCG 1 cut(s) 201
BsuI GTATCC 1 cut(s) 400
BsuRI GGCC 4 cut(s) 162, 203, 701, 1382
BtgI CCRYGG 1 cut(s) 1025
BtsCI GGATG 4 cut(s) 76, 259, 1414, 1422
BtsIMutI CAGTG 1 cut(s) 1057
BveI ACCTGC 1 cut(s) 1452
Cac8I GCNNGC 1 cut(s) 93
CciI TCATGA 2 cut(s) 1110, 1478
Cfr13I GGNCC 5 cut(s) 22, 161, 247, 1361, 1402
Csp6I GTAC 3 cut(s) 387, 556, 617
CviAII CATG 9 cut(s) 238, 635, 790, 955, 1026, 1111, 1252, 1339, 1479
CviQI GTAC 3 cut(s) 387, 556, 617
DdeI CTNAG 9 cut(s) 10, 34, 52, 194, 867, 917, 1013, 1371, 1448
DpnI GATC 2 cut(s) 600, 1096
DpnII GATC 2 cut(s) 598, 1094
EaeI YGGCCR 3 cut(s) 201, 699, 1380
EagI CGGCCG 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
EciI GGCGGA 1 cut(s) 620
EclXI CGGCCG 1 cut(s) 201
Eco130I CCWWGG 2 cut(s) 702, 1025
Eco47I GGWCC 4 cut(s) 22, 247, 1361, 1402
Eco52I CGGCCG 1 cut(s) 201
Eco72I CACGTG 1 cut(s) 539
EcoNI CCTNNNNNAGG 1 cut(s) 1397
EcoO109I RGGNCCY 2 cut(s) 22, 1361
EcoRI GAATTC 2 cut(s) 326, 712
EcoRII CCWGG 1 cut(s) 1404
EcoT14I CCWWGG 2 cut(s) 702, 1025
ErhI CCWWGG 2 cut(s) 702, 1025
FaeI CATG 9 cut(s) 241, 638, 793, 958, 1029, 1114, 1255, 1342, 1482
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FaqI GGGAC 2 cut(s) 976, 1347
FatI CATG 9 cut(s) 237, 634, 789, 954, 1025, 1110, 1251, 1338, 1478
FauNDI CATATG 4 cut(s) 355, 381, 402, 1122
Fnu4HI GCNGC 6 cut(s) 201, 456, 666, 669, 1118, 1217
FokI GGATG 4 cut(s) 83, 246, 1421, 1429
Fsp4HI GCNGC 6 cut(s) 201, 456, 666, 669, 1118, 1217
FspBI CTAG 5 cut(s) 128, 272, 1196, 1394, 1437
GluI GCNGC 6 cut(s) 201, 456, 666, 669, 1118, 1217
GsaI CCCAGC 1 cut(s) 325
HaeIII GGCC 4 cut(s) 162, 203, 701, 1382
HapII CCGG 5 cut(s) 84, 101, 204, 947, 1428
Hin1II CATG 9 cut(s) 241, 638, 793, 958, 1029, 1114, 1255, 1342, 1482
HincII GTYRAC 1 cut(s) 653
HindII GTYRAC 1 cut(s) 653
HindIII AAGCTT 3 cut(s) 179, 209, 1064
HpaII CCGG 5 cut(s) 84, 101, 204, 947, 1428
HphI GGTGA 3 cut(s) 443, 809, 809
Hpy166II GTNNAC 6 cut(s) 250, 361, 374, 395, 653, 1233
Hpy188III TCNNGA 7 cut(s) 20, 596, 919, 947, 1111, 1459, 1479
Hpy8I GTNNAC 6 cut(s) 250, 361, 374, 395, 653, 1233
HpyAV CCTTC 6 cut(s) 36, 148, 421, 480, 1073, 1393
HpyCH4III ACNGT 1 cut(s) 979
HpyCH4IV ACGT 1 cut(s) 538
HpyCH4V TGCA 7 cut(s) 455, 521, 984, 989, 1133, 1286, 1466
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 101, 877
HpyF3I CTNAG 9 cut(s) 10, 34, 52, 194, 867, 917, 1013, 1371, 1448
HpySE526I ACGT 1 cut(s) 538
Hsp92II CATG 9 cut(s) 241, 638, 793, 958, 1029, 1114, 1255, 1342, 1482
KflI GGGWCCC 1 cut(s) 1361
Kpn2I TCCGGA 1 cut(s) 946
Kzo9I GATC 2 cut(s) 598, 1094
Lsp1109I GCAGC 5 cut(s) 467, 652, 655, 1129, 1228
LweI GCATC 2 cut(s) 61, 675
MaeI CTAG 5 cut(s) 128, 272, 1196, 1394, 1437
MaeII ACGT 1 cut(s) 538
MaeIII GTNAC 3 cut(s) 539, 584, 938
MalI GATC 2 cut(s) 600, 1096
MbiI CCGCTC 1 cut(s) 200
MboI GATC 2 cut(s) 598, 1094
MboII GAAGA 6 cut(s) 55, 563, 694, 745, 790, 1082
MfeI CAATTG 1 cut(s) 474
MhlI GDGCHC 1 cut(s) 1203
MlsI TGGCCA 1 cut(s) 1382
MluNI TGGCCA 1 cut(s) 1382
MlyI GAGTC 5 cut(s) 199, 369, 390, 1136, 1478
MmeI TCCRAC 2 cut(s) 1152, 1452
Mox20I TGGCCA 1 cut(s) 1382
MroI TCCGGA 1 cut(s) 946
MscI TGGCCA 1 cut(s) 1382
MseI TTAA 5 cut(s) 41, 266, 806, 1326, 1356
Msp20I TGGCCA 1 cut(s) 1382
MspA1I CMGCKG 1 cut(s) 1219
MspCI CTTAAG 1 cut(s) 1355
MspI CCGG 5 cut(s) 84, 101, 204, 947, 1428
MspR9I CCNGG 3 cut(s) 205, 1406, 1429
MunI CAATTG 1 cut(s) 474
Mva1269I GAATGC 2 cut(s) 1256, 1468
MvaI CCWGG 1 cut(s) 1406
MwoI GCNNNNNNNGC 3 cut(s) 80, 101, 877
NciI CCSGG 2 cut(s) 205, 1429
NcoI CCATGG 1 cut(s) 1025
NdeI CATATG 4 cut(s) 355, 381, 402, 1122
NdeII GATC 2 cut(s) 598, 1094
NlaIII CATG 9 cut(s) 241, 638, 793, 958, 1029, 1114, 1255, 1342, 1482
NlaIV GGNNCC 7 cut(s) 24, 248, 481, 573, 1202, 1362, 1363
NmuCI GTSAC 2 cut(s) 539, 938
NspI RCATGY 1 cut(s) 793
PagI TCATGA 2 cut(s) 1110, 1478
PctI GAATGC 2 cut(s) 1256, 1468
PfeI GAWTC 7 cut(s) 280, 349, 830, 1087, 1210, 1351, 1475
PflMI CCANNNNNTGG 2 cut(s) 243, 1411
PkrI GCNGC 6 cut(s) 202, 457, 667, 670, 1119, 1218
Ple19I CGATCG 1 cut(s) 1097
PleI GAGTC 5 cut(s) 198, 369, 390, 1135, 1477
PmaCI CACGTG 1 cut(s) 539
PmlI CACGTG 1 cut(s) 539
PpsI GAGTC 5 cut(s) 198, 369, 390, 1135, 1477
Ppu21I YACGTR 1 cut(s) 539
PpuMI RGGWCCY 2 cut(s) 22, 1361
Psp5II RGGWCCY 2 cut(s) 22, 1361
Psp6I CCWGG 1 cut(s) 1404
PspCI CACGTG 1 cut(s) 539
PspFI CCCAGC 1 cut(s) 321
PspGI CCWGG 1 cut(s) 1404
PspN4I GGNNCC 7 cut(s) 24, 248, 481, 573, 1202, 1362, 1363
PspPI GGNCC 5 cut(s) 22, 161, 247, 1361, 1402
PspPPI RGGWCCY 2 cut(s) 22, 1361
PvuI CGATCG 1 cut(s) 1097
RsaI GTAC 3 cut(s) 388, 557, 618
RsaNI GTAC 3 cut(s) 387, 556, 617
SaqAI TTAA 5 cut(s) 41, 266, 806, 1326, 1356
SatI GCNGC 6 cut(s) 201, 456, 666, 669, 1118, 1217
Sau3AI GATC 2 cut(s) 598, 1094
Sau96I GGNCC 5 cut(s) 22, 161, 247, 1361, 1402
ScaI AGTACT 1 cut(s) 618
SchI GAGTC 5 cut(s) 199, 369, 390, 1136, 1478
ScrFI CCNGG 3 cut(s) 205, 1406, 1429
SduI GDGCHC 1 cut(s) 1203
SfaNI GCATC 2 cut(s) 61, 675
SinI GGWCC 4 cut(s) 22, 247, 1361, 1402
SmlI CTYRAG 3 cut(s) 176, 284, 1355
SmoI CTYRAG 3 cut(s) 176, 284, 1355
SsiI CCGC 4 cut(s) 200, 631, 1214, 1219
SspMI CTAG 5 cut(s) 128, 272, 1196, 1394, 1437
StyD4I CCNGG 3 cut(s) 203, 1404, 1427
StyI CCWWGG 2 cut(s) 702, 1025
TaaI ACNGT 1 cut(s) 979
TaiI ACGT 1 cut(s) 541
TaqI TCGA 3 cut(s) 66, 1093, 1097
TatI WGTACW 2 cut(s) 555, 616
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 7 cut(s) 280, 349, 830, 1087, 1210, 1351, 1475
Tru1I TTAA 5 cut(s) 41, 266, 806, 1326, 1356
Tru9I TTAA 5 cut(s) 41, 266, 806, 1326, 1356
TscAI CASTG 1 cut(s) 1057
TseFI GTSAC 2 cut(s) 539, 938
TseI GCWGC 5 cut(s) 455, 665, 668, 1117, 1216
Tsp45I GTSAC 2 cut(s) 539, 938
TspDTI ATGAA 8 cut(s) 407, 564, 734, 873, 1058, 1099, 1127, 1467
TspRI CASTG 1 cut(s) 1057
Van91I CCANNNNNTGG 2 cut(s) 243, 1411
Vha464I CTTAAG 1 cut(s) 1355
VpaK11BI GGWCC 4 cut(s) 22, 247, 1361, 1402
XagI CCTNNNNNAGG 1 cut(s) 1397
XapI RAATTY 7 cut(s) 56, 326, 461, 528, 712, 723, 1144
XceI RCATGY 1 cut(s) 793
XcmI CCANNNNNNNNNTGG 1 cut(s) 386
XspI CTAG 5 cut(s) 128, 272, 1196, 1394, 1437
ZrmI AGTACT 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.