Rh6AG065600

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001292
Physical Location & Seq
Forward (+)
9592603 .. 9594323
1721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG065600.1

Sequence Viewer

Length: 1611 bp
ATGTTGTGGGTCCACAAAAACCATCCTTTAACCCTAGCTTTGAATCTCAGGGTTTTTGGGGATTTAGGGCTGTTCAAAGATCTGCTGGGAATTCTCCATAAGGTATTGGAGGAATCCATATGTGGACACTATCTGTGGACTCCATATGGGTACTGGTGGACTCCAAATGGGTACTATTTTTCATTCCTTGAAGGGTACCAGTGTTTAGAGAAGGAAGAGTTCTATTGGGAAAAAGAGAGGAGAAATAAAGTTGAAGAGGTAGTTGCAGCATGGAGAAGAGCAGCTGACATTTCAAAGGCTAAAATTGCAGTTGAGAGGTACCAAAATGACCAAAGGTATCAAAACTTGCATAATCAAGTAGCGGATTTGTTTTCAGAGTTCTTGAAATCAGATGTCAAATTTTTGGAATCAGGTGAGATTGAAAACATCAGTTTTGCTGCCAAATTTTGCCCTTCAATTGATTCCAAATATGATAAAGCAACCCTGATATGTGAAGTCATTGCAAAGAGAATTTTCCCACGCGTAGATTATGAAGAATACAAAGATATTTCGGAACCTCATTATGCTTACAGGGTTCGTAATCGATTGCAGAAACAAGTGCTTGTTCCTCTGCACAAAGTGCTACAGTCATCATCAGTGAACAATGCTGTTGAGAGAAAGAAGTCATGGTCCCAAAACCTTAATGCCCTGAATTGTTTGGAAACTTATTGGGAAATCTACAATTATAGGTGCTCCATCATTGATAGGGATTTAAGCCAAAGCAGATTAGAACTATTTAAGCTTTACATGAAGATTATGGACAGGTTGGGCATAAAAATTGATGACAGGCTAAAACTTCCTCACCAAGTAATAGCTTTTTTGAACAATACACAGGGTAGTGATGAAATTGCAGAGCTTCAGTGGCAGAAACTAGTCCAAGGGCTGTCAAACAAAGGGAAGCTCAGGAATTGTCTTGCTGTGTGTGACAGCTCGTTGAGCATGATAGGAACAGACAAGGAAATGGCGTGCATTGCAATGGGATTATTGATTTCAGAACTGAGTGAGAGTCCATGGAATGGAGTGGTTTTCTCATTCACTGATTTTCCCAAAATTCACAAGATTGTAGGAGAAAGTCTTCGATCGAAGTGCGAGTTCATGAGGCAGATGGAGTGTGATGAGAAAGTGGACTGCTTAGAGATTTACAACCGAGTGTTGGAGATTGCCACCACACAAAAGCTAAACCACATAAAGATGCCAAAGAGGGTTTTTGTGTTCACCTACAAGGATTTTGTTGAGGCCTTCAAGTATGATTGGCCGGATGATTACACAGAAGCATATAACAATTTCAGAAAAAGAGGGTTTGAGTTTAATGTGCCAGAGCTAGAGTTTTGGAATTTGAAGGATTCCATTGCCAAGCCAGAGGTGATTTATAGCCCAGTGAAGGAGAACCAGAAAGTGGGGATCATAATAACAGGGTTCTCTAGCAATCTACTCACGTTGTTCTTGAAAGGGGAGGCAGATTCAAGATCATATGCAGCTCAATTCCAGGCACCTTACGGTATTGATTTACAGTCAGTACCAAAACTGCTTCCTAGAGTAGAGGATGTGTTGCAATTTCAAGAGAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

536

Amino Acids

62.82

Weight (kDa)

6.59

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 1 - 314 5.2e-44 Domain of unknown function (DUF2828)
DUF7788 PF25043 316 - 499 9e-41 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 195, 318
AccB1I GGYRCC 3 cut(s) 195, 318, 1528
AccB7I CCANNNNNTGG 2 cut(s) 1055, 1435
AccII CGCG 1 cut(s) 522
AciI CCGC 1 cut(s) 362
AclWI GGATC 1 cut(s) 1448
AcoI YGGCCR 1 cut(s) 1292
AcsI RAATTY 6 cut(s) 90, 398, 443, 510, 1089, 1372
AcuI CTGAAG 1 cut(s) 881
AdeI CACNNNGTG 1 cut(s) 619
AfaI GTAC 5 cut(s) 152, 173, 197, 320, 1557
AfiI CCNNNNNNNGG 4 cut(s) 1055, 1192, 1420, 1435
AflIII ACRYGT 1 cut(s) 520
AhlI ACTAGT 1 cut(s) 910
AjnI CCWGG 1 cut(s) 1524
Alw21I GWGCWC 1 cut(s) 734
AlwI GGATC 1 cut(s) 1448
AoxI GGCC 2 cut(s) 1275, 1292
ApeKI GCWGC 4 cut(s) 266, 281, 437, 1514
ApoI RAATTY 6 cut(s) 90, 398, 443, 510, 1089, 1372
Asp700I GAANNNNTTC 1 cut(s) 1113
Asp718I GGTACC 2 cut(s) 195, 318
AspS9I GGNCC 2 cut(s) 10, 669
AsuHPI GGTGA 4 cut(s) 425, 833, 1246, 1414
AvaII GGWCC 2 cut(s) 10, 669
BaeI ACNNNNGTAYC 2 cut(s) 187, 220
BanI GGYRCC 3 cut(s) 195, 318, 1528
BbsI GAAGAC 1 cut(s) 1106
Bbv12I GWGCWC 1 cut(s) 734
BbvI GCAGC 4 cut(s) 278, 293, 424, 1526
BccI CCATC 3 cut(s) 30, 743, 1138
BcgI CGANNNNNNTGC 2 cut(s) 1107, 1141
BciT130I CCWGG 1 cut(s) 1526
BcuI ACTAGT 1 cut(s) 910
BfaI CTAG 5 cut(s) 35, 911, 1361, 1461, 1572
BfmI CTRYAG 1 cut(s) 623
BglII AGATCT 1 cut(s) 79
BisI GCNGC 4 cut(s) 267, 282, 438, 1515
BlsI GCNGC 4 cut(s) 268, 283, 439, 1516
Bme1390I CCNGG 1 cut(s) 1526
Bme18I GGWCC 2 cut(s) 10, 669
BmgT120I GGNCC 2 cut(s) 10, 669
BmiI GGNNCC 6 cut(s) 11, 197, 320, 555, 671, 1530
BmrFI CCNGG 1 cut(s) 1526
BmrI ACTGGG 1 cut(s) 1409
BmsI GCATC 1 cut(s) 1221
BmuI ACTGGG 1 cut(s) 1409
BpiI GAAGAC 1 cut(s) 1106
Bpu10I CCTNAGC 1 cut(s) 941
Bsa29I ATCGAT 1 cut(s) 583
BsaJI CCNNGG 2 cut(s) 916, 1049
Bsc4I CCNNNNNNNGG 4 cut(s) 1055, 1192, 1420, 1435
Bse1I ACTGG 3 cut(s) 158, 199, 1415
Bse3DI GCAATG 4 cut(s) 498, 1008, 1020, 1386
BseBI CCWGG 1 cut(s) 1526
BseCI ATCGAT 1 cut(s) 583
BseDI CCNNGG 2 cut(s) 916, 1049
BseGI GGATG 3 cut(s) 22, 1303, 1588
BseLI CCNNNNNNNGG 4 cut(s) 1055, 1192, 1420, 1435
BseMI GCAATG 4 cut(s) 498, 1008, 1020, 1386
BseMII CTCAG 3 cut(s) 61, 955, 1028
BseNI ACTGG 3 cut(s) 158, 199, 1415
BseRI GAGGAG 1 cut(s) 253
BseXI GCAGC 4 cut(s) 278, 293, 424, 1526
BseYI CCCAGC 1 cut(s) 85
BsgI GTGCAG 1 cut(s) 596
Bsh1236I CGCG 1 cut(s) 522
Bsh1285I CGRYCG 1 cut(s) 1121
BshFI GGCC 2 cut(s) 1277, 1294
BshNI GGYRCC 3 cut(s) 195, 318, 1528
BshVI ATCGAT 1 cut(s) 583
BsiEI CGRYCG 1 cut(s) 1121
BsiHKAI GWGCWC 1 cut(s) 734
BsiSI CCGG 1 cut(s) 1295
BslFI GGGAC 1 cut(s) 655
BslI CCNNNNNNNGG 4 cut(s) 1055, 1192, 1420, 1435
BsmFI GGGAC 1 cut(s) 655
BsnI GGCC 2 cut(s) 1277, 1294
Bsp1286I GDGCHC 1 cut(s) 734
Bsp143I GATC 4 cut(s) 79, 1118, 1440, 1505
Bsp19I CCATGG 1 cut(s) 1049
BspACI CCGC 1 cut(s) 362
BspANI GGCC 2 cut(s) 1277, 1294
BspCNI CTCAG 3 cut(s) 60, 954, 1029
BspDI ATCGAT 1 cut(s) 583
BspFNI CGCG 1 cut(s) 522
BspHI TCATGA 1 cut(s) 1134
BspLI GGNNCC 6 cut(s) 11, 197, 320, 555, 671, 1530
BspPI GGATC 1 cut(s) 1448
BspQI GCTCTTC 1 cut(s) 271
BspT107I GGYRCC 3 cut(s) 195, 318, 1528
BsrDI GCAATG 4 cut(s) 498, 1008, 1020, 1386
BsrI ACTGG 3 cut(s) 158, 199, 1415
BssECI CCNNGG 2 cut(s) 916, 1049
BssMI GATC 4 cut(s) 79, 1118, 1440, 1505
BssT1I CCWWGG 2 cut(s) 916, 1049
Bst2UI CCWGG 1 cut(s) 1526
Bst4CI ACNGT 3 cut(s) 627, 1538, 1551
Bst6I CTCTTC 3 cut(s) 210, 249, 271
BstAPI GCANNNNNTGC 1 cut(s) 619
BstC8I GCNNGC 1 cut(s) 1006
BstDEI CTNAG 4 cut(s) 47, 941, 1037, 1171
BstDSI CCRYGG 1 cut(s) 1049
BstF5I GGATG 3 cut(s) 22, 1303, 1588
BstFNI CGCG 1 cut(s) 522
BstKTI GATC 4 cut(s) 82, 1121, 1443, 1508
BstMBI GATC 4 cut(s) 79, 1118, 1440, 1505
BstMCI CGRYCG 1 cut(s) 1121
BstMWI GCNNNNNNNGC 5 cut(s) 305, 619, 901, 975, 1010
BstNI CCWGG 1 cut(s) 1526
BstSCI CCNGG 1 cut(s) 1524
BstSFI CTRYAG 1 cut(s) 623
BstUI CGCG 1 cut(s) 522
BstV1I GCAGC 4 cut(s) 278, 293, 424, 1526
BstV2I GAAGAC 1 cut(s) 1106
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
Bsu15I ATCGAT 1 cut(s) 583
BsuRI GGCC 2 cut(s) 1277, 1294
BsuTUI ATCGAT 1 cut(s) 583
BtgI CCRYGG 1 cut(s) 1049
BtsCI GGATG 3 cut(s) 22, 1303, 1588
BtsIMutI CAGTG 5 cut(s) 206, 642, 905, 1074, 1422
Cac8I GCNNGC 1 cut(s) 1006
CciI TCATGA 1 cut(s) 1134
Cfr13I GGNCC 2 cut(s) 10, 669
ClaI ATCGAT 1 cut(s) 583
Csp6I GTAC 5 cut(s) 151, 172, 196, 319, 1556
CviAII CATG 6 cut(s) 270, 666, 787, 979, 1050, 1135
CviQI GTAC 5 cut(s) 151, 172, 196, 319, 1556
DdeI CTNAG 4 cut(s) 47, 941, 1037, 1171
DpnI GATC 4 cut(s) 81, 1120, 1442, 1507
DpnII GATC 4 cut(s) 79, 1118, 1440, 1505
DraIII CACNNNGTG 1 cut(s) 619
EaeI YGGCCR 1 cut(s) 1292
Eam1104I CTCTTC 3 cut(s) 210, 249, 271
EarI CTCTTC 3 cut(s) 210, 249, 271
Eco130I CCWWGG 2 cut(s) 916, 1049
Eco147I AGGCCT 1 cut(s) 1277
Eco47I GGWCC 2 cut(s) 10, 669
Eco57I CTGAAG 1 cut(s) 881
EcoRI GAATTC 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 1524
EcoT14I CCWWGG 2 cut(s) 916, 1049
ErhI CCWWGG 2 cut(s) 916, 1049
FaeI CATG 6 cut(s) 273, 669, 790, 982, 1053, 1138
FaqI GGGAC 1 cut(s) 655
FatI CATG 6 cut(s) 269, 665, 786, 978, 1049, 1134
FauNDI CATATG 3 cut(s) 119, 145, 1510
Fnu4HI GCNGC 4 cut(s) 267, 282, 438, 1515
FokI GGATG 3 cut(s) 9, 1310, 1595
Fsp4HI GCNGC 4 cut(s) 267, 282, 438, 1515
FspBI CTAG 5 cut(s) 35, 911, 1361, 1461, 1572
GluI GCNGC 4 cut(s) 267, 282, 438, 1515
GsaI CCCAGC 1 cut(s) 89
HaeIII GGCC 2 cut(s) 1277, 1294
HapII CCGG 1 cut(s) 1295
Hin1II CATG 6 cut(s) 273, 669, 790, 982, 1053, 1138
HindIII AAGCTT 1 cut(s) 779
HinfI GANTC 9 cut(s) 43, 113, 139, 160, 407, 461, 1045, 1382, 1499
HpaII CCGG 1 cut(s) 1295
HphI GGTGA 4 cut(s) 425, 833, 1246, 1414
Hpy166II GTNNAC 7 cut(s) 13, 125, 138, 159, 640, 1165, 1254
Hpy188I TCNGA 5 cut(s) 376, 391, 553, 1033, 1328
Hpy188III TCNNGA 6 cut(s) 382, 943, 1135, 1483, 1503, 1598
Hpy8I GTNNAC 7 cut(s) 13, 125, 138, 159, 640, 1165, 1254
HpyAV CCTTC 6 cut(s) 185, 205, 462, 1288, 1372, 1414
HpyCH4III ACNGT 3 cut(s) 627, 1538, 1551
HpyCH4IV ACGT 1 cut(s) 1475
HpyF10VI GCNNNNNNNGC 5 cut(s) 305, 619, 901, 975, 1010
HpyF3I CTNAG 4 cut(s) 47, 941, 1037, 1171
HpySE526I ACGT 1 cut(s) 1475
Hsp92II CATG 6 cut(s) 273, 669, 790, 982, 1053, 1138
KpnI GGTACC 2 cut(s) 199, 322
Kzo9I GATC 4 cut(s) 79, 1118, 1440, 1505
LguI GCTCTTC 1 cut(s) 271
LmnI GCTCC 1 cut(s) 737
Lsp1109I GCAGC 4 cut(s) 278, 293, 424, 1526
LweI GCATC 1 cut(s) 1221
MaeI CTAG 5 cut(s) 35, 911, 1361, 1461, 1572
MaeII ACGT 1 cut(s) 1475
MaeIII GTNAC 1 cut(s) 962
MalI GATC 4 cut(s) 81, 1120, 1442, 1507
MboI GATC 4 cut(s) 79, 1118, 1440, 1505
MboII GAAGA 6 cut(s) 227, 266, 288, 545, 802, 1106
MfeI CAATTG 1 cut(s) 456
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 734
MluI ACGCGT 1 cut(s) 520
MlyI GAGTC 3 cut(s) 133, 154, 1054
MmeI TCCRAC 1 cut(s) 1173
MroXI GAANNNNTTC 1 cut(s) 1113
MseI TTAA 5 cut(s) 29, 681, 752, 777, 1347
MslI CAYNNNNRTG 2 cut(s) 1013, 1229
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 1 cut(s) 1295
MspR9I CCNGG 1 cut(s) 1526
MunI CAATTG 1 cut(s) 456
MvaI CCWGG 1 cut(s) 1526
MvnI CGCG 1 cut(s) 522
MwoI GCNNNNNNNGC 5 cut(s) 305, 619, 901, 975, 1010
NcoI CCATGG 1 cut(s) 1049
NdeI CATATG 3 cut(s) 119, 145, 1510
NdeII GATC 4 cut(s) 79, 1118, 1440, 1505
NlaIII CATG 6 cut(s) 273, 669, 790, 982, 1053, 1138
NlaIV GGNNCC 6 cut(s) 11, 197, 320, 555, 671, 1530
NmuCI GTSAC 1 cut(s) 962
PagI TCATGA 1 cut(s) 1134
PceI AGGCCT 1 cut(s) 1277
PciSI GCTCTTC 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 1113
PfeI GAWTC 6 cut(s) 43, 113, 407, 461, 1382, 1499
PflMI CCANNNNNTGG 2 cut(s) 1055, 1435
PkrI GCNGC 4 cut(s) 268, 283, 439, 1516
Ple19I CGATCG 1 cut(s) 1121
PleI GAGTC 3 cut(s) 133, 154, 1053
PpsI GAGTC 3 cut(s) 133, 154, 1053
Psp6I CCWGG 1 cut(s) 1524
PspFI CCCAGC 1 cut(s) 85
PspGI CCWGG 1 cut(s) 1524
PspN4I GGNNCC 6 cut(s) 11, 197, 320, 555, 671, 1530
PspPI GGNCC 2 cut(s) 10, 669
PsuI RGATCY 1 cut(s) 79
PvuI CGATCG 1 cut(s) 1121
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 5 cut(s) 152, 173, 197, 320, 1557
RsaNI GTAC 5 cut(s) 151, 172, 196, 319, 1556
RseI CAYNNNNRTG 2 cut(s) 1013, 1229
SapI GCTCTTC 1 cut(s) 271
SaqAI TTAA 5 cut(s) 29, 681, 752, 777, 1347
SatI GCNGC 4 cut(s) 267, 282, 438, 1515
Sau3AI GATC 4 cut(s) 79, 1118, 1440, 1505
Sau96I GGNCC 2 cut(s) 10, 669
SchI GAGTC 3 cut(s) 133, 154, 1054
ScrFI CCNGG 1 cut(s) 1526
SduI GDGCHC 1 cut(s) 734
SfaNI GCATC 1 cut(s) 1221
SfcI CTRYAG 1 cut(s) 623
SinI GGWCC 2 cut(s) 10, 669
SmiMI CAYNNNNRTG 2 cut(s) 1013, 1229
SpeI ACTAGT 1 cut(s) 910
SseBI AGGCCT 1 cut(s) 1277
SsiI CCGC 1 cut(s) 362
SspMI CTAG 5 cut(s) 35, 911, 1361, 1461, 1572
StuI AGGCCT 1 cut(s) 1277
StyD4I CCNGG 1 cut(s) 1524
StyI CCWWGG 2 cut(s) 916, 1049
TaaI ACNGT 3 cut(s) 627, 1538, 1551
TaiI ACGT 1 cut(s) 1478
TaqI TCGA 3 cut(s) 583, 1117, 1121
TfiI GAWTC 6 cut(s) 43, 113, 407, 461, 1382, 1499
Tru1I TTAA 5 cut(s) 29, 681, 752, 777, 1347
Tru9I TTAA 5 cut(s) 29, 681, 752, 777, 1347
TscAI CASTG 5 cut(s) 206, 642, 905, 1081, 1422
TseFI GTSAC 1 cut(s) 962
TseI GCWGC 4 cut(s) 266, 281, 437, 1514
Tsp45I GTSAC 1 cut(s) 962
TspDTI ATGAA 5 cut(s) 171, 546, 803, 897, 1123
TspRI CASTG 5 cut(s) 206, 642, 905, 1081, 1422
Van91I CCANNNNNTGG 2 cut(s) 1055, 1435
VpaK11BI GGWCC 2 cut(s) 10, 669
XapI RAATTY 6 cut(s) 90, 398, 443, 510, 1089, 1372
XcmI CCANNNNNNNNNTGG 1 cut(s) 150
XmnI GAANNNNTTC 1 cut(s) 1113
XspI CTAG 5 cut(s) 35, 911, 1361, 1461, 1572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.