Prupe.8G140100_v2.0.a1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0001292
Physical Location & Seq
Reverse (-)
15853925 .. 15855588
1664 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G140100.1

Sequence Viewer

Length: 1251 bp
ATGAAGATTTTTGCGGAATTGGGTTGGTTCCAAGATCTATTGGAGGTTCTCTATAGGGTTTTGCAGAAATCCATAGATGAAGCAAAGAAAAAATCCAGAGATGAAGCGAAGAAAAGGGAAGAAGAGGGGGAGGGAAGACGGAAAGAGTATGGGAAGAATCGTTCGAATGAATGGCAGAAACCTAGGAATAGGTATTGGTCCAACTATGACGAAAGCGATGTGGAGGAAGAGAAGGAAGAGATAAAAACAGTCACAGATGTTCGCATCGCCAGGGCTAAAAGCGCGGTTGACAGGTACCAAAACGACCTTGAATATCGGTTCTTGCATGATCGTGTATCGGAGGTGTTTGTGGAGATGCTGACATCAGATGTCTTGTCTTTGGAGTCTGGTGAGATTGAACATATCAGCACTGCTTCCAAATTCTGTCCTTCGATTGATTCATCTTACGACAGAGCAACTTTGATATGTGAAAACATAGCAAGGAGAATGTTTCCACGCCATAATTTTGGGGAGTACAAAGATGTTGAAGAAGCTCATTATGCTTATAGGGTCCGTAATCGACTGAGGAAACAAGTACTTAGCCCCCTACGCAAGGCATTGGAGCGCTTACCAGCTGCAAAACAGGACAAGAAGTCATTATCATTGTTCAAGAACCGCAAGAGGCTGATTGCTTTGGAAATCTACAGCAAGATCATTGGTTGTGGTGGTGGAGGCCGTGATGAAAGAAGATTGCAAATTAAGGGTTACATGAAGCTCGTGGACATACTATTACCCAAGAAAAATATTGTCGACATATGCTTTGGTGATGGGCTAAAGCCTCCTCACCATGTGGTGGCCTTGTTGGAAAAGGAACATGGCGGTGATGATGAGATTGCAGAGGTTCAATGGCGGAGATTAGTCCAAGAGTTTTCGAACAAAGGGAGGCTCAGGAATTGTATTGCAGTGTGTGATGTCCCGGAGAGCATGAGAGGGACATTGAAGGAGATGGTTTGCATTTCAATGGGGTTGTTGGTTTCGGAGCTCAGCGAAAAACCTTGGCAAGGTTTTGTTATCCCGCTCAGCGATTTTCCAAGGCTGCACAAAGTTGAAGGAGACAATCTGCAGTCGAAATTGCTTGGTGAATATATCAGCAACCTGTTCTTCAATTTTGCAATAAAGCAAATCGATCTCACCATTCTGAAGAGCATCTCGAATGAAATGAAACCTGCGATTGATGTGTCTAGTTTTGTAGTGATGAACTGGATTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

417

Amino Acids

48.36

Weight (kDa)

8.62

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1213
Acc65I GGTACC 1 cut(s) 294
AccB1I GGYRCC 1 cut(s) 294
AccB7I CCANNNNNTGG 1 cut(s) 832
AccBSI CCGCTC 1 cut(s) 1057
AccI GTMKAC 1 cut(s) 789
AccII CGCG 1 cut(s) 284
AciI CCGC 6 cut(s) 14, 284, 655, 858, 889, 1055
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 1 cut(s) 1199
AdeI CACNNNGTG 1 cut(s) 829
AfaI GTAC 3 cut(s) 296, 515, 576
AfeI AGCGCT 1 cut(s) 605
AfiI CCNNNNNNNGG 3 cut(s) 592, 832, 1040
AgsI TTSAA 9 cut(s) 311, 398, 527, 649, 884, 979, 999, 1088, 1144
AhdI GACNNNNNGTC 1 cut(s) 631
AjnI CCWGG 1 cut(s) 269
AloI GAACNNNNNNTCC 2 cut(s) 145, 177
AluBI AGCT 4 cut(s) 533, 614, 754, 1021
AluI AGCT 4 cut(s) 533, 614, 754, 1021
Alw21I GWGCWC 1 cut(s) 1023
Alw26I GTCTC 1 cut(s) 1086
Aor51HI AGCGCT 1 cut(s) 605
AoxI GGCC 2 cut(s) 712, 834
ApeKI GCWGC 2 cut(s) 614, 1075
ApoI RAATTY 1 cut(s) 419
ArsI GACNNNNNNTTYG 2 cut(s) 782, 814
Asp718I GGTACC 1 cut(s) 294
AspA2I CCTAGG 1 cut(s) 182
AspLEI GCGC 2 cut(s) 284, 606
AspS9I GGNCC 2 cut(s) 198, 550
AsuC2I CCSGG 1 cut(s) 956
AsuHPI GGTGA 6 cut(s) 401, 815, 815, 872, 1130, 1162
AsuII TTCGAA 2 cut(s) 164, 911
AvaII GGWCC 2 cut(s) 198, 550
AvrII CCTAGG 1 cut(s) 182
BanI GGYRCC 1 cut(s) 294
BanII GRGCYC 1 cut(s) 1023
BauI CACGAG 1 cut(s) 755
BbsI GAAGAC 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 1023
BbvI GCAGC 2 cut(s) 601, 1062
BccI CCATC 2 cut(s) 800, 979
BceAI ACGGC 1 cut(s) 699
BciT130I CCWGG 1 cut(s) 271
BcnI CCSGG 1 cut(s) 956
BcoDI GTCTC 1 cut(s) 1086
BfaI CTAG 2 cut(s) 183, 1221
BfmI CTRYAG 3 cut(s) 52, 682, 1100
BfoI RGCGCY 1 cut(s) 607
BfuAI ACCTGC 1 cut(s) 1213
BglII AGATCT 1 cut(s) 34
BisI GCNGC 2 cut(s) 615, 1076
BlnI CCTAGG 1 cut(s) 182
BlpI GCTNAGC 2 cut(s) 1022, 1058
BlsI GCNGC 2 cut(s) 616, 1077
BmcAI AGTACT 1 cut(s) 576
Bme1390I CCNGG 2 cut(s) 271, 956
Bme18I GGWCC 2 cut(s) 198, 550
BmeRI GACNNNNNGTC 1 cut(s) 631
BmgT120I GGNCC 2 cut(s) 198, 550
BmiI GGNNCC 3 cut(s) 29, 296, 551
BmrFI CCNGG 2 cut(s) 271, 956
BmsI GCATC 3 cut(s) 273, 345, 1194
BpiI GAAGAC 1 cut(s) 142
Bpu10I CCTNAGC 1 cut(s) 926
Bpu1102I GCTNAGC 2 cut(s) 1022, 1058
Bpu14I TTCGAA 2 cut(s) 164, 911
BpuMI CCSGG 1 cut(s) 956
Bsa29I ATCGAT 1 cut(s) 1164
BsaJI CCNNGG 4 cut(s) 182, 270, 1034, 1070
Bsc4I CCNNNNNNNGG 3 cut(s) 592, 832, 1040
Bse1I ACTGG 1 cut(s) 1244
BseBI CCWGG 1 cut(s) 271
BseCI ATCGAT 1 cut(s) 1164
BseDI CCNNGG 4 cut(s) 182, 270, 1034, 1070
BseLI CCNNNNNNNGG 3 cut(s) 592, 832, 1040
BseMII CTCAG 4 cut(s) 554, 940, 1036, 1072
BseNI ACTGG 1 cut(s) 1244
BseRI GAGGAG 1 cut(s) 810
BseXI GCAGC 2 cut(s) 601, 1062
BsgI GTGCAG 1 cut(s) 1061
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 2 cut(s) 714, 836
BshNI GGYRCC 1 cut(s) 294
BshVI ATCGAT 1 cut(s) 1164
BsiHKAI GWGCWC 1 cut(s) 1023
BsiSI CCGG 1 cut(s) 956
BslFI GGGAC 2 cut(s) 938, 985
BslI CCNNNNNNNGG 3 cut(s) 592, 832, 1040
BsmAI GTCTC 1 cut(s) 1086
BsmFI GGGAC 2 cut(s) 938, 985
BsnI GGCC 2 cut(s) 714, 836
Bsp119I TTCGAA 2 cut(s) 164, 911
Bsp1286I GDGCHC 1 cut(s) 1023
Bsp143I GATC 4 cut(s) 34, 328, 690, 1165
Bsp1720I GCTNAGC 2 cut(s) 1022, 1058
BspACI CCGC 6 cut(s) 14, 284, 655, 858, 889, 1055
BspANI GGCC 2 cut(s) 714, 836
BspCNI CTCAG 4 cut(s) 555, 939, 1035, 1071
BspDI ATCGAT 1 cut(s) 1164
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 3 cut(s) 29, 296, 551
BspMAI CTGCAG 1 cut(s) 1104
BspMI ACCTGC 1 cut(s) 1213
BspQI GCTCTTC 1 cut(s) 1175
BspT104I TTCGAA 2 cut(s) 164, 911
BspT107I GGYRCC 1 cut(s) 294
BsrBI CCGCTC 1 cut(s) 1057
BsrI ACTGG 1 cut(s) 1244
BssECI CCNNGG 4 cut(s) 182, 270, 1034, 1070
BssMI GATC 4 cut(s) 34, 328, 690, 1165
BssSI CACGAG 1 cut(s) 755
BssT1I CCWWGG 3 cut(s) 182, 1034, 1070
Bst2BI CACGAG 1 cut(s) 755
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 4 cut(s) 117, 222, 231, 1175
BstBI TTCGAA 2 cut(s) 164, 911
BstDEI CTNAG 5 cut(s) 563, 578, 926, 1022, 1058
BstENI CCTNNNNNAGG 2 cut(s) 590, 1038
BstFNI CGCG 1 cut(s) 284
BstH2I RGCGCY 1 cut(s) 607
BstHHI GCGC 2 cut(s) 284, 606
BstKTI GATC 4 cut(s) 37, 331, 693, 1168
BstMAI GTCTC 1 cut(s) 1086
BstMBI GATC 4 cut(s) 34, 328, 690, 1165
BstMWI GCNNNNNNNGC 3 cut(s) 281, 539, 588
BstNI CCWGG 1 cut(s) 271
BstSCI CCNGG 2 cut(s) 269, 954
BstSFI CTRYAG 3 cut(s) 52, 682, 1100
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 2 cut(s) 601, 1062
BstV2I GAAGAC 1 cut(s) 142
BstX2I RGATCY 1 cut(s) 34
BstXI CCANNNNNNTGG 1 cut(s) 506
BstYI RGATCY 1 cut(s) 34
Bsu15I ATCGAT 1 cut(s) 1164
BsuRI GGCC 2 cut(s) 714, 836
BsuTUI ATCGAT 1 cut(s) 1164
BtgZI GCGATG 2 cut(s) 231, 250
BtsI GCAGTG 2 cut(s) 408, 948
BtsIMutI CAGTG 2 cut(s) 408, 948
BveI ACCTGC 1 cut(s) 1213
CfoI GCGC 2 cut(s) 284, 606
Cfr13I GGNCC 2 cut(s) 198, 550
ClaI ATCGAT 1 cut(s) 1164
Csp6I GTAC 3 cut(s) 295, 514, 575
CviAII CATG 5 cut(s) 326, 748, 827, 854, 964
CviQI GTAC 3 cut(s) 295, 514, 575
DdeI CTNAG 5 cut(s) 563, 578, 926, 1022, 1058
DpnI GATC 4 cut(s) 36, 330, 692, 1167
DpnII GATC 4 cut(s) 34, 328, 690, 1165
DraIII CACNNNGTG 1 cut(s) 829
DriI GACNNNNNGTC 1 cut(s) 631
Eam1104I CTCTTC 4 cut(s) 117, 222, 231, 1175
Eam1105I GACNNNNNGTC 1 cut(s) 631
EarI CTCTTC 4 cut(s) 117, 222, 231, 1175
EciI GGCGGA 1 cut(s) 904
Ecl136II GAGCTC 1 cut(s) 1021
Eco130I CCWWGG 3 cut(s) 182, 1034, 1070
Eco24I GRGCYC 1 cut(s) 1023
Eco47I GGWCC 2 cut(s) 198, 550
Eco47III AGCGCT 1 cut(s) 605
Eco53kI GAGCTC 1 cut(s) 1021
Eco57I CTGAAG 1 cut(s) 1199
EcoICRI GAGCTC 1 cut(s) 1021
EcoNI CCTNNNNNAGG 2 cut(s) 590, 1038
EcoRII CCWGG 1 cut(s) 269
EcoT14I CCWWGG 3 cut(s) 182, 1034, 1070
EcoT38I GRGCYC 1 cut(s) 1023
ErhI CCWWGG 3 cut(s) 182, 1034, 1070
FaeI CATG 5 cut(s) 329, 751, 830, 857, 967
FaqI GGGAC 2 cut(s) 938, 985
FatI CATG 5 cut(s) 325, 747, 826, 853, 963
FauI CCCGC 1 cut(s) 1062
FauNDI CATATG 1 cut(s) 794
FblI GTMKAC 1 cut(s) 789
Fnu4HI GCNGC 2 cut(s) 615, 1076
FriOI GRGCYC 1 cut(s) 1023
Fsp4HI GCNGC 2 cut(s) 615, 1076
FspBI CTAG 2 cut(s) 183, 1221
GlaI GCGC 2 cut(s) 283, 605
GluI GCNGC 2 cut(s) 615, 1076
HaeII RGCGCY 1 cut(s) 607
HaeIII GGCC 2 cut(s) 714, 836
HapII CCGG 1 cut(s) 956
HhaI GCGC 2 cut(s) 284, 606
Hin1II CATG 5 cut(s) 329, 751, 830, 857, 967
Hin6I GCGC 2 cut(s) 282, 604
HinP1I GCGC 2 cut(s) 282, 604
HincII GTYRAC 2 cut(s) 289, 790
HindII GTYRAC 2 cut(s) 289, 790
HinfI GANTC 4 cut(s) 157, 383, 437, 1243
HpaII CCGG 1 cut(s) 956
HphI GGTGA 6 cut(s) 401, 815, 815, 872, 1130, 1162
Hpy166II GTNNAC 3 cut(s) 289, 760, 790
Hpy188I TCNGA 4 cut(s) 340, 367, 1018, 1179
Hpy188III TCNNGA 4 cut(s) 96, 649, 928, 1189
Hpy8I GTNNAC 3 cut(s) 289, 760, 790
HpyAV CCTTC 4 cut(s) 226, 438, 973, 1082
HpyCH4III ACNGT 1 cut(s) 250
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 539, 588
HpyF3I CTNAG 5 cut(s) 563, 578, 926, 1022, 1058
Hsp92II CATG 5 cut(s) 329, 751, 830, 857, 967
HspAI GCGC 2 cut(s) 282, 604
KpnI GGTACC 1 cut(s) 298
Kzo9I GATC 4 cut(s) 34, 328, 690, 1165
LguI GCTCTTC 1 cut(s) 1175
LmnI GCTCC 2 cut(s) 601, 1018
Lsp1109I GCAGC 2 cut(s) 601, 1062
LweI GCATC 3 cut(s) 273, 345, 1194
MaeI CTAG 2 cut(s) 183, 1221
MaeIII GTNAC 2 cut(s) 250, 743
MalI GATC 4 cut(s) 36, 330, 692, 1167
MbiI CCGCTC 1 cut(s) 1057
MboI GATC 4 cut(s) 34, 328, 690, 1165
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 1023
MluCI AATT 7 cut(s) 17, 419, 502, 735, 931, 1109, 1144
MlyI GAGTC 1 cut(s) 392
MmeI TCCRAC 2 cut(s) 225, 822
MseI TTAA 1 cut(s) 738
MslI CAYNNNNRTG 3 cut(s) 330, 858, 998
MspA1I CMGCKG 1 cut(s) 614
MspI CCGG 1 cut(s) 956
MspR9I CCNGG 2 cut(s) 271, 956
MvaI CCWGG 1 cut(s) 271
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 3 cut(s) 281, 539, 588
NciI CCSGG 1 cut(s) 956
NdeI CATATG 1 cut(s) 794
NdeII GATC 4 cut(s) 34, 328, 690, 1165
NlaIII CATG 5 cut(s) 329, 751, 830, 857, 967
NlaIV GGNNCC 3 cut(s) 29, 296, 551
NmuCI GTSAC 1 cut(s) 250
NspV TTCGAA 2 cut(s) 164, 911
PciSI GCTCTTC 1 cut(s) 1175
PfeI GAWTC 3 cut(s) 157, 437, 1243
PflMI CCANNNNNTGG 1 cut(s) 832
PfoI TCCNGGA 1 cut(s) 954
PkrI GCNGC 2 cut(s) 616, 1077
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
Psp124BI GAGCTC 1 cut(s) 1023
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
PspN4I GGNNCC 3 cut(s) 29, 296, 551
PspPI GGNCC 2 cut(s) 198, 550
PstI CTGCAG 1 cut(s) 1104
PsuI RGATCY 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 3 cut(s) 296, 515, 576
RsaNI GTAC 3 cut(s) 295, 514, 575
RseI CAYNNNNRTG 3 cut(s) 330, 858, 998
SacI GAGCTC 1 cut(s) 1023
SalI GTCGAC 1 cut(s) 788
SapI GCTCTTC 1 cut(s) 1175
SaqAI TTAA 1 cut(s) 738
SatI GCNGC 2 cut(s) 615, 1076
Sau3AI GATC 4 cut(s) 34, 328, 690, 1165
Sau96I GGNCC 2 cut(s) 198, 550
ScaI AGTACT 1 cut(s) 576
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 2 cut(s) 271, 956
SduI GDGCHC 1 cut(s) 1023
SfaNI GCATC 3 cut(s) 273, 345, 1194
SfcI CTRYAG 3 cut(s) 52, 682, 1100
SfuI TTCGAA 2 cut(s) 164, 911
SinI GGWCC 2 cut(s) 198, 550
SmiMI CAYNNNNRTG 3 cut(s) 330, 858, 998
Sse9I AATT 7 cut(s) 17, 419, 502, 735, 931, 1109, 1144
SsiI CCGC 6 cut(s) 14, 284, 655, 858, 889, 1055
SspI AATATT 1 cut(s) 784
SspMI CTAG 2 cut(s) 183, 1221
SstI GAGCTC 1 cut(s) 1023
StyD4I CCNGG 2 cut(s) 269, 954
StyI CCWWGG 3 cut(s) 182, 1034, 1070
TaaI ACNGT 1 cut(s) 250
TaqI TCGA 8 cut(s) 164, 431, 559, 789, 911, 1106, 1164, 1190
TasI AATT 7 cut(s) 17, 419, 502, 735, 931, 1109, 1144
TatI WGTACW 2 cut(s) 513, 574
TfiI GAWTC 3 cut(s) 157, 437, 1243
Tru1I TTAA 1 cut(s) 738
Tru9I TTAA 1 cut(s) 738
TscAI CASTG 2 cut(s) 415, 948
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 2 cut(s) 614, 1075
Tsp45I GTSAC 1 cut(s) 250
TspGWI ACGGA 2 cut(s) 154, 542
TspRI CASTG 2 cut(s) 415, 948
Van91I CCANNNNNTGG 1 cut(s) 832
VpaK11BI GGWCC 2 cut(s) 198, 550
XagI CCTNNNNNAGG 2 cut(s) 590, 1038
XapI RAATTY 1 cut(s) 419
XmaJI CCTAGG 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 789
XspI CTAG 2 cut(s) 183, 1221
ZrmI AGTACT 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.