Rh6CG059200

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001292
Physical Location & Seq
Forward (+)
5884818 .. 5885177
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG059200.1

Sequence Viewer

Length: 360 bp
ATGAGGCAGATGAAGTGCACCGAGAAACTAAATTTTGCAGCGATTTACAACCGAATTTTGCAGATTGCCATCACAGAAAAGCTCAGCAACACGAAGATGCCTGAAAGGATTTTCGTTTTCACCTACAATGATTTTGTGACGTCCTCCAAAAACAACTGGGTGCAAGATTACAAAGAGGCTTGGGAGAATTACAGAAATAGAGGGTATTTCACTGTGCCACAAATAGTGTTTTGGAATCTCAAGGATCCCATTGCTGAGCCGGTTGTGTTTGGTAGCCCTGTGAAGAACCAGAATGGGGGAATGATCGTAACTGGGTTTTCCAACGTTCTGCATGCTCAAAGTGTTCTTCAATGGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

119

Amino Acids

13.9

Weight (kDa)

9.33

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7788 PF25043 1 - 110 8.6e-20 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 143
AclI AACGTT 1 cut(s) 324
AclWI GGATC 2 cut(s) 239, 252
AcsI RAATTY 2 cut(s) 31, 54
AcyI GRCGYC 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 295
AgsI TTSAA 1 cut(s) 350
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
Alw21I GWGCWC 1 cut(s) 20
Alw44I GTGCAC 1 cut(s) 16
AlwI GGATC 2 cut(s) 239, 252
ApaLI GTGCAC 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 2 cut(s) 31, 54
AsuHPI GGTGA 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 20
BamHI GGATCC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 50
BccI CCATC 1 cut(s) 77
BisI GCNGC 1 cut(s) 39
BlpI GCTNAGC 2 cut(s) 83, 255
BlsI GCNGC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 246
BmrI ACTGGG 2 cut(s) 166, 321
BmsI GCATC 1 cut(s) 87
BmuI ACTGGG 2 cut(s) 166, 321
Bpu1102I GCTNAGC 2 cut(s) 83, 255
BpuEI CTTGAG 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse118I RCCGGY 1 cut(s) 259
Bse1I ACTGG 2 cut(s) 161, 316
Bse3DI GCAATG 1 cut(s) 249
Bse8I GATNNNNATC 1 cut(s) 68
BseJI GATNNNNATC 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 2 cut(s) 97, 246
BseNI ACTGG 2 cut(s) 161, 316
BseSI GKGCMC 1 cut(s) 20
BseXI GCAGC 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 2 cut(s) 244, 303
Bsp1720I GCTNAGC 2 cut(s) 83, 255
BspCNI CTCAG 2 cut(s) 96, 247
BspLI GGNNCC 1 cut(s) 246
BspPI GGATC 2 cut(s) 239, 252
BsrDI GCAATG 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 259
BsrI ACTGG 2 cut(s) 161, 316
BssAI RCCGGY 1 cut(s) 259
BssMI GATC 2 cut(s) 244, 303
BssNI GRCGYC 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 214
BstACI GRCGYC 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 2 cut(s) 83, 255
BstKTI GATC 2 cut(s) 247, 306
BstMBI GATC 2 cut(s) 244, 303
BstNSI RCATGY 1 cut(s) 335
BstSLI GKGCMC 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 333
Cfr10I RCCGGY 1 cut(s) 259
CviAII CATG 1 cut(s) 332
CviJI RGCY 4 cut(s) 82, 179, 259, 276
CviKI_1 RGCY 4 cut(s) 82, 179, 259, 276
DdeI CTNAG 2 cut(s) 83, 255
DpnI GATC 2 cut(s) 246, 305
DpnII GATC 2 cut(s) 244, 303
FaeI CATG 1 cut(s) 335
FaiI YATR 1 cut(s) 333
FatI CATG 1 cut(s) 331
Fnu4HI GCNGC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 39
HapII CCGG 1 cut(s) 260
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 1 cut(s) 335
HinfI GANTC 1 cut(s) 235
HpaII CCGG 1 cut(s) 260
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 18
Hpy8I GTNNAC 1 cut(s) 18
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 2 cut(s) 140, 324
HpyCH4V TGCA 5 cut(s) 18, 38, 61, 163, 331
HpyF3I CTNAG 2 cut(s) 83, 255
HpySE526I ACGT 2 cut(s) 140, 324
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 1 cut(s) 335
Kzo9I GATC 2 cut(s) 244, 303
LpnPI CCDG 6 cut(s) 114, 142, 273, 291, 297, 302
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 1 cut(s) 87
MaeII ACGT 2 cut(s) 140, 324
MaeIII GTNAC 2 cut(s) 136, 307
MalI GATC 2 cut(s) 246, 305
MboI GATC 2 cut(s) 244, 303
MboII GAAGA 3 cut(s) 106, 295, 338
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 3 cut(s) 31, 54, 187
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 3 cut(s) 154, 169, 194
MslI CAYNNNNRTG 1 cut(s) 95
MspI CCGG 1 cut(s) 260
NdeII GATC 2 cut(s) 244, 303
NlaIII CATG 1 cut(s) 335
NlaIV GGNNCC 1 cut(s) 246
NmuCI GTSAC 1 cut(s) 136
NspI RCATGY 1 cut(s) 335
PaeI GCATGC 1 cut(s) 335
PfeI GAWTC 1 cut(s) 235
PkrI GCNGC 1 cut(s) 40
Psp1406I AACGTT 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 246
PsuI RGATCY 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 95
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 2 cut(s) 244, 303
SduI GDGCHC 1 cut(s) 20
SetI ASST 4 cut(s) 84, 125, 143, 327
SfaNI GCATC 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
SphI GCATGC 1 cut(s) 335
Sse9I AATT 3 cut(s) 31, 54, 187
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 2 cut(s) 143, 327
TasI AATT 3 cut(s) 31, 54, 187
TfiI GAWTC 1 cut(s) 235
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 26
TspRI CASTG 1 cut(s) 217
VneI GTGCAC 1 cut(s) 16
XapI RAATTY 2 cut(s) 31, 54
XceI RCATGY 1 cut(s) 335
ZraI GACGTC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.