RchiOBHm_Chr6g0254131

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001292
Physical Location & Seq
Forward (+)
9185710 .. 9186633
924 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22793

Sequence Viewer

Length: 924 bp
ATGTTCCCACGCAATAATCATATAGAGTACAAATATGTTGAAGACCCTTATTACACTTACAGGGTTCGTAATCGTTTGGGGGACCAAGTACTAATTCCTCTACGTGAAGCCATAGAGAAGGTGAAGAAGCCATCAATTGAAACCGGAAAAGCATTGATTGCTCTGGAAACATACAGGAAGATATTCGGGCCGGAGTCAAAAGAAGAAGGCGGCAGCATAGTGCTGTTTCATCATTGCATGAAGCTAATCGAGTTCTTTTCACCGAAGGAAAATATGGTCGGCATGTTTGGGAATTTAAGCATTGGCGACTGTTCTAAAAAGCTCCCTCACCAAATAGTGGTTTCCTTATTTAAGAAGGAAAAGGTAAAGGGACGTGGACCACGTGGTAATGAAGCTGCAGAGCTCGAGTGGAAGGGACTACTGCAAGAGTTAACGAACCAAGGCAAGCTCAGGAATTGTGTTACCGTCTGTGACATGAGGTCGAGCATGACAGGGACATTCAAGGAGGCGGCTTGTATCTCAATGGGGTTATTGATTTCGGAGTTGAGTGAAAATCCATGGAAAGGAAAGATCTTCTCCTTCAATGAATTTCCCAAGCTGAATGAGGTTGCAGGAGACGATCTTCAATCCAAATGCGAGTTCATGAGGCAGATGGAATGCACTGAGAAAGTTAACTTCGGCGCTATTTACAATCGGATTTTGCAGATTGCACTCACAGAGAAGCTAAGTAAGGAGCAAATGCCTAAAAGGATTTTCGTCTTCACCTATAGTGATTTTGTCGCGGCCTCCAAAAACAACTGGATGAAGAATACAGGGAAGCATGGGCTAGTTACAGAAAGAGAGGGTTTTCAACTGTGCCGCAAATGGTGTTTTGGAATCTCAGGGACCCGGTTGGGGAGCCGGAGGTATTTGGGAGCCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

307

Amino Acids

35.22

Weight (kDa)

9.33

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7788 PF25043 152 - 268 5.7e-28 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 337
AccII CGCG 1 cut(s) 782
AciI CCGC 4 cut(s) 210, 509, 782, 859
AcsI RAATTY 2 cut(s) 292, 587
AcvI CACGTG 1 cut(s) 383
AfaI GTAC 2 cut(s) 29, 90
AfiI CCNNNNNNNGG 3 cut(s) 337, 563, 894
AgsI TTSAA 6 cut(s) 41, 140, 502, 583, 626, 851
AhdI GACNNNNNGTC 1 cut(s) 478
AjiI CACGTC 1 cut(s) 374
AjuI GAANNNNNNNTTGG 4 cut(s) 78, 110, 623, 655
AluBI AGCT 7 cut(s) 244, 322, 395, 403, 448, 598, 724
AluI AGCT 7 cut(s) 244, 322, 395, 403, 448, 598, 724
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 1 cut(s) 609
Ama87I CYCGRG 1 cut(s) 404
AoxI GGCC 2 cut(s) 188, 783
ApeKI GCWGC 2 cut(s) 213, 395
ApoI RAATTY 2 cut(s) 292, 587
Asp700I GAANNNNTTC 1 cut(s) 182
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 4 cut(s) 82, 188, 377, 885
AsuC2I CCSGG 2 cut(s) 889, 919
AsuHPI GGTGA 4 cut(s) 133, 252, 320, 754
AvaI CYCGRG 1 cut(s) 404
AvaII GGWCC 3 cut(s) 82, 377, 885
BanII GRGCYC 2 cut(s) 405, 919
BbrPI CACGTG 1 cut(s) 383
BbsI GAAGAC 2 cut(s) 48, 751
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 2 cut(s) 225, 382
BccI CCATC 2 cut(s) 139, 646
BcnI CCSGG 2 cut(s) 889, 919
BcoDI GTCTC 1 cut(s) 609
BfaI CTAG 1 cut(s) 827
BfmI CTRYAG 2 cut(s) 396, 766
BfoI RGCGCY 1 cut(s) 684
BglII AGATCT 1 cut(s) 570
BisI GCNGC 6 cut(s) 211, 214, 396, 510, 783, 859
BlsI GCNGC 6 cut(s) 212, 215, 397, 511, 784, 860
BmcAI AGTACT 1 cut(s) 90
Bme1390I CCNGG 2 cut(s) 889, 919
Bme18I GGWCC 3 cut(s) 82, 377, 885
BmeRI GACNNNNNGTC 1 cut(s) 478
BmeT110I CYCGRG 1 cut(s) 404
BmgBI CACGTC 1 cut(s) 374
BmgT120I GGNCC 4 cut(s) 82, 188, 377, 885
BmiI GGNNCC 5 cut(s) 83, 886, 887, 899, 916
BmrFI CCNGG 2 cut(s) 889, 919
BpiI GAAGAC 2 cut(s) 48, 751
Bpu10I CCTNAGC 1 cut(s) 449
BpuMI CCSGG 2 cut(s) 889, 919
BsaAI YACGTR 2 cut(s) 104, 383
BsaJI CCNNGG 2 cut(s) 439, 557
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 3 cut(s) 337, 563, 894
Bse1I ACTGG 1 cut(s) 803
Bse3DI GCAATG 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 439, 557
BseGI GGATG 1 cut(s) 807
BseLI CCNNNNNNNGG 3 cut(s) 337, 563, 894
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 3 cut(s) 463, 654, 894
BseNI ACTGG 1 cut(s) 803
BseXI GCAGC 2 cut(s) 225, 382
Bsh1236I CGCG 1 cut(s) 782
BshFI GGCC 2 cut(s) 190, 785
BsiHKAI GWGCWC 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 404
BsiSI CCGG 5 cut(s) 144, 191, 889, 901, 919
BslFI GGGAC 5 cut(s) 95, 384, 429, 508, 898
BslI CCNNNNNNNGG 3 cut(s) 337, 563, 894
BsmAI GTCTC 1 cut(s) 609
BsmBI CGTCTC 1 cut(s) 609
BsmFI GGGAC 5 cut(s) 95, 384, 429, 508, 898
BsmI GAATGC 1 cut(s) 662
BsnI GGCC 2 cut(s) 190, 785
BsoBI CYCGRG 1 cut(s) 404
Bsp1286I GDGCHC 2 cut(s) 405, 919
Bsp143I GATC 2 cut(s) 570, 619
Bsp19I CCATGG 1 cut(s) 557
BspACI CCGC 4 cut(s) 210, 509, 782, 859
BspANI GGCC 2 cut(s) 190, 785
BspCNI CTCAG 3 cut(s) 462, 655, 893
BspFNI CGCG 1 cut(s) 782
BspHI TCATGA 1 cut(s) 642
BspLI GGNNCC 5 cut(s) 83, 886, 887, 899, 916
BspMAI CTGCAG 1 cut(s) 400
BsrDI GCAATG 1 cut(s) 232
BsrI ACTGG 1 cut(s) 803
BssECI CCNNGG 2 cut(s) 439, 557
BssMI GATC 2 cut(s) 570, 619
BssT1I CCWWGG 2 cut(s) 439, 557
Bst4CI ACNGT 3 cut(s) 311, 466, 855
BstAPI GCANNNNNTGC 1 cut(s) 158
BstBAI YACGTR 2 cut(s) 104, 383
BstC8I GCNNGC 1 cut(s) 446
BstDEI CTNAG 4 cut(s) 449, 663, 725, 880
BstDSI CCRYGG 1 cut(s) 557
BstF5I GGATG 1 cut(s) 807
BstFNI CGCG 1 cut(s) 782
BstH2I RGCGCY 1 cut(s) 684
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 2 cut(s) 573, 622
BstMAI GTCTC 1 cut(s) 609
BstMBI GATC 2 cut(s) 570, 619
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 2 cut(s) 887, 917
BstSFI CTRYAG 2 cut(s) 396, 766
BstUI CGCG 1 cut(s) 782
BstV1I GCAGC 2 cut(s) 225, 382
BstV2I GAAGAC 2 cut(s) 48, 751
BstX2I RGATCY 1 cut(s) 570
BstYI RGATCY 1 cut(s) 570
BsuRI GGCC 2 cut(s) 190, 785
BtgI CCRYGG 1 cut(s) 557
BtrI CACGTC 1 cut(s) 374
BtsCI GGATG 1 cut(s) 807
BtsIMutI CAGTG 1 cut(s) 660
Cac8I GCNNGC 1 cut(s) 446
CciI TCATGA 1 cut(s) 642
CfoI GCGC 1 cut(s) 683
Cfr13I GGNCC 4 cut(s) 82, 188, 377, 885
Csp6I GTAC 2 cut(s) 28, 89
CviAII CATG 7 cut(s) 238, 283, 475, 487, 558, 643, 821
CviQI GTAC 2 cut(s) 28, 89
DdeI CTNAG 4 cut(s) 449, 663, 725, 880
DpnI GATC 2 cut(s) 572, 621
DpnII GATC 2 cut(s) 570, 619
DriI GACNNNNNGTC 1 cut(s) 478
Eam1105I GACNNNNNGTC 1 cut(s) 478
Ecl136II GAGCTC 1 cut(s) 403
Eco130I CCWWGG 2 cut(s) 439, 557
Eco24I GRGCYC 2 cut(s) 405, 919
Eco47I GGWCC 3 cut(s) 82, 377, 885
Eco53kI GAGCTC 1 cut(s) 403
Eco72I CACGTG 1 cut(s) 383
Eco88I CYCGRG 1 cut(s) 404
EcoICRI GAGCTC 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 885
EcoT14I CCWWGG 2 cut(s) 439, 557
EcoT38I GRGCYC 2 cut(s) 405, 919
ErhI CCWWGG 2 cut(s) 439, 557
Esp3I CGTCTC 1 cut(s) 609
FaeI CATG 7 cut(s) 241, 286, 478, 490, 561, 646, 824
FaqI GGGAC 5 cut(s) 95, 384, 429, 508, 898
FatI CATG 7 cut(s) 237, 282, 474, 486, 557, 642, 820
Fnu4HI GCNGC 6 cut(s) 211, 214, 396, 510, 783, 859
FokI GGATG 1 cut(s) 814
FriOI GRGCYC 2 cut(s) 405, 919
Fsp4HI GCNGC 6 cut(s) 211, 214, 396, 510, 783, 859
FspBI CTAG 1 cut(s) 827
GlaI GCGC 1 cut(s) 682
GluI GCNGC 6 cut(s) 211, 214, 396, 510, 783, 859
HaeII RGCGCY 1 cut(s) 684
HaeIII GGCC 2 cut(s) 190, 785
HapII CCGG 5 cut(s) 144, 191, 889, 901, 919
HhaI GCGC 1 cut(s) 683
Hin1II CATG 7 cut(s) 241, 286, 478, 490, 561, 646, 824
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HincII GTYRAC 2 cut(s) 432, 673
HindII GTYRAC 2 cut(s) 432, 673
HinfI GANTC 2 cut(s) 194, 876
HpaI GTTAAC 2 cut(s) 432, 673
HpaII CCGG 5 cut(s) 144, 191, 889, 901, 919
HphI GGTGA 4 cut(s) 133, 252, 320, 754
Hpy166II GTNNAC 3 cut(s) 377, 432, 673
Hpy188I TCNGA 2 cut(s) 541, 696
Hpy188III TCNNGA 3 cut(s) 164, 451, 643
Hpy8I GTNNAC 3 cut(s) 377, 432, 673
HpyAV CCTTC 6 cut(s) 112, 200, 259, 349, 406, 589
HpyCH4III ACNGT 3 cut(s) 311, 466, 855
HpyCH4IV ACGT 3 cut(s) 103, 373, 382
HpyCH4V TGCA 7 cut(s) 237, 398, 424, 611, 660, 703, 710
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 4 cut(s) 449, 663, 725, 880
HpySE526I ACGT 3 cut(s) 103, 373, 382
Hsp92II CATG 7 cut(s) 241, 286, 478, 490, 561, 646, 824
HspAI GCGC 1 cut(s) 681
KflI GGGWCCC 1 cut(s) 885
KspAI GTTAAC 2 cut(s) 432, 673
Kzo9I GATC 2 cut(s) 570, 619
LmnI GCTCC 4 cut(s) 327, 733, 897, 914
Lsp1109I GCAGC 2 cut(s) 225, 382
MaeI CTAG 1 cut(s) 827
MaeII ACGT 3 cut(s) 103, 373, 382
MaeIII GTNAC 3 cut(s) 460, 470, 829
MalI GATC 2 cut(s) 572, 621
MboI GATC 2 cut(s) 570, 619
MboII GAAGA 8 cut(s) 53, 136, 190, 215, 565, 614, 751, 817
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 1 cut(s) 570
MhlI GDGCHC 2 cut(s) 405, 919
MluCI AATT 5 cut(s) 93, 135, 292, 454, 587
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 9 cut(s) 108, 336, 471, 499, 598, 639, 796, 835, 897
MroXI GAANNNNTTC 1 cut(s) 182
MseI TTAA 4 cut(s) 296, 351, 431, 672
MspI CCGG 5 cut(s) 144, 191, 889, 901, 919
MspR9I CCNGG 2 cut(s) 889, 919
MunI CAATTG 1 cut(s) 135
Mva1269I GAATGC 1 cut(s) 662
MvnI CGCG 1 cut(s) 782
MwoI GCNNNNNNNGC 1 cut(s) 158
NciI CCSGG 2 cut(s) 889, 919
NcoI CCATGG 1 cut(s) 557
NdeII GATC 2 cut(s) 570, 619
NlaIII CATG 7 cut(s) 241, 286, 478, 490, 561, 646, 824
NlaIV GGNNCC 5 cut(s) 83, 886, 887, 899, 916
NmuCI GTSAC 1 cut(s) 470
NspI RCATGY 1 cut(s) 286
PaeR7I CTCGAG 1 cut(s) 404
PagI TCATGA 1 cut(s) 642
PcsI WCGNNNNNNNCGW 1 cut(s) 379
PctI GAATGC 1 cut(s) 662
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 1 cut(s) 876
PflMI CCANNNNNTGG 1 cut(s) 337
PkrI GCNGC 6 cut(s) 212, 215, 397, 511, 784, 860
PleI GAGTC 1 cut(s) 202
PmaCI CACGTG 1 cut(s) 383
PmlI CACGTG 1 cut(s) 383
PpsI GAGTC 1 cut(s) 202
Ppu21I YACGTR 2 cut(s) 104, 383
PpuMI RGGWCCY 1 cut(s) 885
Psp124BI GAGCTC 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 885
PspCI CACGTG 1 cut(s) 383
PspN4I GGNNCC 5 cut(s) 83, 886, 887, 899, 916
PspPI GGNCC 4 cut(s) 82, 188, 377, 885
PspPPI RGGWCCY 1 cut(s) 885
PspXI VCTCGAGB 1 cut(s) 404
PstI CTGCAG 1 cut(s) 400
PsuI RGATCY 1 cut(s) 570
RsaI GTAC 2 cut(s) 29, 90
RsaNI GTAC 2 cut(s) 28, 89
SacI GAGCTC 1 cut(s) 405
SaqAI TTAA 4 cut(s) 296, 351, 431, 672
SatI GCNGC 6 cut(s) 211, 214, 396, 510, 783, 859
Sau3AI GATC 2 cut(s) 570, 619
Sau96I GGNCC 4 cut(s) 82, 188, 377, 885
ScaI AGTACT 1 cut(s) 90
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 2 cut(s) 889, 919
SduI GDGCHC 2 cut(s) 405, 919
SfcI CTRYAG 2 cut(s) 396, 766
Sfr274I CTCGAG 1 cut(s) 404
SinI GGWCC 3 cut(s) 82, 377, 885
SlaI CTCGAG 1 cut(s) 404
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 5 cut(s) 93, 135, 292, 454, 587
SsiI CCGC 4 cut(s) 210, 509, 782, 859
SspMI CTAG 1 cut(s) 827
SstI GAGCTC 1 cut(s) 405
StyD4I CCNGG 2 cut(s) 887, 917
StyI CCWWGG 2 cut(s) 439, 557
TaaI ACNGT 3 cut(s) 311, 466, 855
TaiI ACGT 3 cut(s) 106, 376, 385
TaqI TCGA 3 cut(s) 249, 405, 482
TasI AATT 5 cut(s) 93, 135, 292, 454, 587
TatI WGTACW 2 cut(s) 27, 88
TauI GCSGC 4 cut(s) 213, 512, 785, 861
TfiI GAWTC 1 cut(s) 876
Tru1I TTAA 4 cut(s) 296, 351, 431, 672
Tru9I TTAA 4 cut(s) 296, 351, 431, 672
TscAI CASTG 1 cut(s) 667
TseFI GTSAC 1 cut(s) 470
TseI GCWGC 2 cut(s) 213, 395
Tsp45I GTSAC 1 cut(s) 470
TspDTI ATGAA 6 cut(s) 218, 254, 405, 600, 631, 818
TspRI CASTG 1 cut(s) 667
Van91I CCANNNNNTGG 1 cut(s) 337
VpaK11BI GGWCC 3 cut(s) 82, 377, 885
XapI RAATTY 2 cut(s) 292, 587
XceI RCATGY 1 cut(s) 286
XhoI CTCGAG 1 cut(s) 404
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 1 cut(s) 827
ZrmI AGTACT 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.