Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001714

Physical Location & Seq

Genomic Coordinates Forward (+)

13935905 .. 13936201

Gene Structure 297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g15910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCCTTGCTATGATAATCCTGAGTACAGTAACTCGTTCGATGTCTTCATTCGAGGTGAGGAGATCATATCAGGTGCACAACGTATCCATTCAGCAGAATTCTTGACCGAACGTGCTAAAGCATGTGGAATTGAAGTAGAGACAATATCACCGTATATTGATTCCTTCAGATATGGTGTACCTGCCCATGGTGGATTTGGAGTAGAGCTGGAGCGTGTTGTGATGCTCTTCTGTGGTTTGAATAACATCCGCAAAACATCCTTATTCCCGCGTGATCCGAAACGGCTAACTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006422 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045202 GO:0046483 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

99

Amino Acids

11.07

Weight (kDa)

5.63

Isoelectric Point (pI)

49.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2	PF00152	6 - 92	6.8e-23	tRNA synthetases class II (D, K and N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26870 AT4G31180 AT4G31180
fragaria_vesca	FvH4_2g15870 FvH4_2g15910 FvH4_2g30550
malus_domestica	MD08G1134400.v1.1 MD12G1153800.v1.1 MD14G1143300.v1.1 MD15G1113400.v1.1
prunus_persica	Prupe.1G463800_v2.0.a1 Prupe.4G141600_v2.0.a1 Prupe.8G055000_v2.0.a1
pyrus_communis	pycom08g11340 pycom15g10170 pycom16g11710
rosa_chinensis	RchiOBHm_Chr5g0032141 RchiOBHm_Chr5g0032161 RchiOBHm_Chr6g0278871 RchiOBHm_Chr6g0312531
rosa_laevigata	RLG00000010321 RLG00000033368
rosa_multiflora	Rmu_co8427103.1_g000001 Rmu_sc0003031.1_g000023 Rmu_sc0005375.1_g000002 Rmu_sc0005375.1_g000011 Rmu_sc0008363.1_g000011 Rmu_sc0043080.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048240 Rroxscaffold_1G00048270 Rroxscaffold_7G00156770
rosa_rugosa	Rorug06G0119800 Rorug06G0120000 Rorug06G0123400 Rorug06G0396100 Rorug06G0396200
rosa_samantha	Rh5DG228900 Rh6AG228300 Rh6AG513500 Rh6BG233900 Rh6BG234000 Rh6BG524200 Rh6BG526500 Rh6CG236300 Rh6CG531400 Rh6DG515600
rosa_wichuraiana	Rw6G020030 Rw6G044650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	190
AccII	CGCG	1 cut(s)	271
AciI	CCGC	2 cut(s)	250, 269
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	151
AfaI	GTAC	2 cut(s)	26, 180
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	134, 241
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	134
Alw44I	GTGCAC	1 cut(s)	75
AlwI	GGATC	1 cut(s)	269
ApaLI	GTGCAC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	98
AsuHPI	GGTGA	2 cut(s)	68, 141
BaeGI	GKGCMC	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	79
BciVI	GTATCC	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	134
BfuAI	ACCTGC	1 cut(s)	190
BfuI	GTATCC	1 cut(s)	95
BmsI	GCATC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	2 cut(s)	246, 257
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	1 cut(s)	12
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	63, 274
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	2 cut(s)	250, 269
BspCNI	CTCAG	1 cut(s)	13
BspFNI	CGCG	1 cut(s)	271
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	1 cut(s)	269
BspQI	GCTCTTC	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	2 cut(s)	63, 274
BssT1I	CCWWGG	1 cut(s)	187
Bst4CI	ACNGT	2 cut(s)	29, 153
Bst6I	CTCTTC	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	21
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	246, 257
BstFNI	CGCG	1 cut(s)	271
BstKTI	GATC	2 cut(s)	66, 277
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	2 cut(s)	63, 274
BstNSI	RCATGY	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	79
BstUI	CGCG	1 cut(s)	271
BstV2I	GAAGAC	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	246, 257
BveI	ACCTGC	1 cut(s)	190
Csp6I	GTAC	2 cut(s)	25, 179
CviAII	CATG	2 cut(s)	123, 188
CviJI	RGCY	2 cut(s)	208, 286
CviKI_1	RGCY	2 cut(s)	208, 286
CviQI	GTAC	2 cut(s)	25, 179
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	2 cut(s)	65, 276
DpnII	GATC	2 cut(s)	63, 274
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco130I	CCWWGG	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	2 cut(s)	126, 191
FaiI	YATR	6 cut(s)	12, 68, 124, 156, 174, 189
FatI	CATG	2 cut(s)	122, 187
FauI	CCCGC	1 cut(s)	276
FokI	GGATG	2 cut(s)	233, 244
GsuI	CTGGAG	1 cut(s)	230
Hin1II	CATG	2 cut(s)	126, 191
HinfI	GANTC	1 cut(s)	161
HphI	GGTGA	2 cut(s)	68, 141
Hpy166II	GTNNAC	2 cut(s)	77, 179
Hpy188I	TCNGA	2 cut(s)	170, 279
Hpy188III	TCNNGA	2 cut(s)	20, 103
Hpy8I	GTNNAC	2 cut(s)	77, 179
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	2 cut(s)	29, 153
HpyCH4IV	ACGT	2 cut(s)	82, 112
HpyCH4V	TGCA	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	2 cut(s)	82, 112
Hsp92II	CATG	2 cut(s)	126, 191
Kzo9I	GATC	2 cut(s)	63, 274
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	4 cut(s)	33, 57, 194, 195
LweI	GCATC	1 cut(s)	213
MaeII	ACGT	2 cut(s)	82, 112
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	2 cut(s)	65, 276
MboI	GATC	2 cut(s)	63, 274
MboII	GAAGA	2 cut(s)	37, 220
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	2 cut(s)	98, 129
MnlI	CCTC	2 cut(s)	47, 52
MseI	TTAA	1 cut(s)	295
MvnI	CGCG	1 cut(s)	271
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	2 cut(s)	63, 274
NlaIII	CATG	2 cut(s)	126, 191
NspI	RCATGY	1 cut(s)	126
PciSI	GCTCTTC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	161
RsaI	GTAC	2 cut(s)	26, 180
RsaNI	GTAC	2 cut(s)	25, 179
SapI	GCTCTTC	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	295
Sau3AI	GATC	2 cut(s)	63, 274
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	6 cut(s)	58, 76, 85, 115, 184, 210
SfaNI	GCATC	1 cut(s)	213
Sse9I	AATT	2 cut(s)	98, 129
SsiI	CCGC	2 cut(s)	250, 269
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	29, 153
TaiI	ACGT	2 cut(s)	85, 115
TaqI	TCGA	2 cut(s)	39, 52
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	2 cut(s)	98, 129
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	1 cut(s)	295
Tru9I	TTAA	1 cut(s)	295
TspDTI	ATGAA	1 cut(s)	37
VneI	GTGCAC	1 cut(s)	75
XapI	RAATTY	1 cut(s)	98
XceI	RCATGY	1 cut(s)	126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.