Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8427103.1

Orthogroup ID

OG0001714

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1326

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8427103.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ctgtttctgagctgttcactgactttgatttatcctcatgtttttgaagaagacgttttggagaaaataaaggactgggtgatggatgagacttccagtgtctcggtcgaataccagaactggaagcatgatttgggaggaaaggaggtctcagattttgaaatgctgaagacatattctactggacttcttgctgtttgtttgactgggggtcaagtagtggaagatgtgttgacgtccggattgtcagccaaacttatgcgttatcttcgtgtccgtgttttgggggagtcaagtattagtcagaaggattctagtcatttaacagagactaaaaacacctctggtgtaagaggtagagatgaaggtcggggtagggttcggcaagttctggaaacaactcattttgatgatccaagggtaacaagtgagagatgcttggatgaccagactgttgaagggaaccaggacagaagtatctgtaggcaagcgtttggaggagaacgttgggttgatggtggagaaccacctgatggaatggatgaaggggttgagatcaatgatgttgatggcagtgattctcgtgatttacgtgatgggaaacaaaaatttggtgattttgatgaaaatgggagagatgactcctcaaggcgcagacctaaccgtggatgggcacgatctagagggaagggaagggcaaacgaaggcggtgtagaaaatgagcagctgttgacctcacccggatctgctattcggttgggacaggggcgaagctttagagacaagagtacatcaaagaattcagacgtgaaaaaaatatcagattctaggaagtgtttgggcaggaatgcttctgatgttttgtttctggaaagagaggataatgatgagtgcttccaggattgcacagttggaagtaaggatatctctgatctagtaaaaaaagcagttcgagctgcagaagctgaagctagagcagccaatgcacctgtagaagccatcaaagctgctggtgatgctgctgcggaagttgtcaaaagtgcagctttagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LisH

Protein Analysis

351

Amino Acids

38.62

Weight (kDa)

5.06

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26870 AT4G31180 AT4G31180
fragaria_vesca	FvH4_2g15870 FvH4_2g15910 FvH4_2g30550
malus_domestica	MD08G1134400.v1.1 MD12G1153800.v1.1 MD14G1143300.v1.1 MD15G1113400.v1.1
prunus_persica	Prupe.1G463800_v2.0.a1 Prupe.4G141600_v2.0.a1 Prupe.8G055000_v2.0.a1
pyrus_communis	pycom08g11340 pycom15g10170 pycom16g11710
rosa_chinensis	RchiOBHm_Chr5g0032141 RchiOBHm_Chr5g0032161 RchiOBHm_Chr6g0278871 RchiOBHm_Chr6g0312531
rosa_laevigata	RLG00000010321 RLG00000033368
rosa_multiflora	Rmu_co8427103.1_g000001 Rmu_sc0003031.1_g000023 Rmu_sc0005375.1_g000002 Rmu_sc0005375.1_g000011 Rmu_sc0008363.1_g000011 Rmu_sc0043080.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048240 Rroxscaffold_1G00048270 Rroxscaffold_7G00156770
rosa_rugosa	Rorug06G0119800 Rorug06G0120000 Rorug06G0123400 Rorug06G0396100 Rorug06G0396200
rosa_samantha	Rh5DG228900 Rh6AG228300 Rh6AG513500 Rh6BG233900 Rh6BG234000 Rh6BG524200 Rh6BG526500 Rh6CG236300 Rh6CG531400 Rh6DG515600
rosa_wichuraiana	Rw6G020030 Rw6G044650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	239
AccB7I	CCANNNNNTGG	1 cut(s)	533
AccIII	TCCGGA	1 cut(s)	239
AciI	CCGC	2 cut(s)	708, 1025
AclI	AACGTT	1 cut(s)	505
AclWI	GGATC	2 cut(s)	407, 751
AcsI	RAATTY	2 cut(s)	608, 799
AcuI	CTGAAG	2 cut(s)	188, 987
AcyI	GRCGYC	1 cut(s)	236
AfaI	GTAC	1 cut(s)	790
AfiI	CCNNNNNNNGG	4 cut(s)	283, 533, 665, 670
AgsI	TTSAA	3 cut(s)	47, 161, 458
AhdI	GACNNNNNGTC	1 cut(s)	210
AjiI	CACGTC	1 cut(s)	808
AjnI	CCWGG	2 cut(s)	465, 897
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	8 cut(s)	12, 727, 774, 956, 965, 971, 1007, 1046
AluI	AGCT	8 cut(s)	12, 727, 774, 956, 965, 971, 1007, 1046
Alw26I	GTCTC	5 cut(s)	83, 106, 154, 323, 774
AlwI	GGATC	2 cut(s)	407, 751
AlwNI	CAGNNNCTG	1 cut(s)	965
Aor13HI	TCCGGA	1 cut(s)	239
ApeKI	GCWGC	7 cut(s)	724, 956, 977, 1007, 1019, 1022, 1043
ApoI	RAATTY	2 cut(s)	608, 799
AspLEI	GCGC	1 cut(s)	654
AsuC2I	CCSGG	1 cut(s)	741
AsuHPI	GGTGA	4 cut(s)	91, 626, 729, 1025
BaeGI	GKGCMC	1 cut(s)	676
BaeI	ACNNNNGTAYC	2 cut(s)	460, 493
BauI	CACGAG	1 cut(s)	582
BbsI	GAAGAC	2 cut(s)	57, 176
BbvI	GCAGC	6 cut(s)	736, 943, 989, 994, 1006, 1009
BccI	CCATC	7 cut(s)	76, 509, 527, 563, 590, 663, 1007
BciT130I	CCWGG	2 cut(s)	467, 899
BcnI	CCSGG	1 cut(s)	741
BcoDI	GTCTC	5 cut(s)	83, 106, 154, 323, 774
BfaI	CTAG	5 cut(s)	315, 681, 828, 935, 972
BfmI	CTRYAG	3 cut(s)	481, 957, 990
BisI	GCNGC	7 cut(s)	725, 957, 978, 1008, 1020, 1023, 1044
BlsI	GCNGC	7 cut(s)	726, 958, 979, 1009, 1021, 1024, 1045
Bme1390I	CCNGG	3 cut(s)	467, 741, 899
BmeRI	GACNNNNNGTC	1 cut(s)	210
BmgBI	CACGTC	1 cut(s)	808
BmiI	GGNNCC	1 cut(s)	464
BmrFI	CCNGG	3 cut(s)	467, 741, 899
BmrI	ACTGGG	2 cut(s)	85, 216
BmsI	GCATC	2 cut(s)	425, 1006
BmuI	ACTGGG	2 cut(s)	85, 216
BpiI	GAAGAC	2 cut(s)	57, 176
BpuEI	CTTGAG	1 cut(s)	631
BpuMI	CCSGG	1 cut(s)	741
BsaAI	YACGTR	1 cut(s)	593
BsaHI	GRCGYC	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	416, 664
BsaWI	WCCGGW	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	4 cut(s)	283, 533, 665, 670
Bse1I	ACTGG	5 cut(s)	80, 96, 125, 187, 211
BseAI	TCCGGA	1 cut(s)	239
BseBI	CCWGG	2 cut(s)	467, 899
BseDI	CCNNGG	2 cut(s)	416, 664
BseGI	GGATG	4 cut(s)	91, 448, 547, 674
BseLI	CCNNNNNNNGG	4 cut(s)	283, 533, 665, 670
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	5 cut(s)	80, 96, 125, 187, 211
BseRI	GAGGAG	2 cut(s)	513, 634
BseSI	GKGCMC	1 cut(s)	676
BseXI	GCAGC	6 cut(s)	736, 943, 989, 994, 1006, 1009
Bsh1285I	CGRYCG	1 cut(s)	108
BsiEI	CGRYCG	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	240, 741
BslFI	GGGAC	1 cut(s)	774
BslI	CCNNNNNNNGG	4 cut(s)	283, 533, 665, 670
BsmAI	GTCTC	5 cut(s)	83, 106, 154, 323, 774
BsmFI	GGGAC	1 cut(s)	774
BsmI	GAATGC	1 cut(s)	853
Bso31I	GGTCTC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	676
Bsp13I	TCCGGA	1 cut(s)	239
Bsp143I	GATC	5 cut(s)	412, 555, 677, 743, 931
BspACI	CCGC	2 cut(s)	708, 1025
BspCNI	CTCAG	1 cut(s)	164
BspEI	TCCGGA	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	464
BspMAI	CTGCAG	1 cut(s)	961
BspPI	GGATC	2 cut(s)	407, 751
BspTNI	GGTCTC	1 cut(s)	154
BsrI	ACTGG	5 cut(s)	80, 96, 125, 187, 211
BssECI	CCNNGG	2 cut(s)	416, 664
BssMI	GATC	5 cut(s)	412, 555, 677, 743, 931
BssNI	GRCGYC	1 cut(s)	236
BssSI	CACGAG	1 cut(s)	582
BssT1I	CCWWGG	1 cut(s)	416
Bst2BI	CACGAG	1 cut(s)	582
Bst2UI	CCWGG	2 cut(s)	467, 899
Bst4CI	ACNGT	3 cut(s)	454, 665, 910
BstACI	GRCGYC	1 cut(s)	236
BstAPI	GCANNNNNTGC	1 cut(s)	983
BstBAI	YACGTR	1 cut(s)	593
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	2 cut(s)	8, 151
BstDSI	CCRYGG	1 cut(s)	664
BstF5I	GGATG	4 cut(s)	91, 448, 547, 674
BstHHI	GCGC	1 cut(s)	654
BstKTI	GATC	5 cut(s)	415, 558, 680, 746, 934
BstMAI	GTCTC	5 cut(s)	83, 106, 154, 323, 774
BstMBI	GATC	5 cut(s)	412, 555, 677, 743, 931
BstMCI	CGRYCG	1 cut(s)	108
BstMWI	GCNNNNNNNGC	6 cut(s)	953, 962, 977, 983, 1004, 1016
BstNI	CCWGG	2 cut(s)	467, 899
BstSCI	CCNGG	3 cut(s)	465, 739, 897
BstSFI	CTRYAG	3 cut(s)	481, 957, 990
BstSLI	GKGCMC	1 cut(s)	676
BstV1I	GCAGC	6 cut(s)	736, 943, 989, 994, 1006, 1009
BstV2I	GAAGAC	2 cut(s)	57, 176
BstX2I	RGATCY	1 cut(s)	743
BstYI	RGATCY	1 cut(s)	743
BtgI	CCRYGG	1 cut(s)	664
BtrI	CACGTC	1 cut(s)	808
BtsCI	GGATG	4 cut(s)	91, 448, 547, 674
BtsI	GCAGTG	1 cut(s)	580
BtsIMutI	CAGTG	3 cut(s)	17, 103, 580
Cac8I	GCNNGC	1 cut(s)	489
CaiI	CAGNNNCTG	1 cut(s)	965
CfoI	GCGC	1 cut(s)	654
Csp6I	GTAC	1 cut(s)	789
CviAII	CATG	2 cut(s)	38, 128
CviQI	GTAC	1 cut(s)	789
DdeI	CTNAG	2 cut(s)	8, 151
DpnI	GATC	5 cut(s)	414, 557, 679, 745, 933
DpnII	GATC	5 cut(s)	412, 555, 677, 743, 931
DriI	GACNNNNNGTC	1 cut(s)	210
Eam1105I	GACNNNNNGTC	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	416
Eco31I	GGTCTC	1 cut(s)	154
Eco32I	GATATC	1 cut(s)	925
Eco57I	CTGAAG	2 cut(s)	188, 987
EcoRI	GAATTC	1 cut(s)	799
EcoRII	CCWGG	2 cut(s)	465, 897
EcoRV	GATATC	1 cut(s)	925
EcoT14I	CCWWGG	1 cut(s)	416
ErhI	CCWWGG	1 cut(s)	416
FaeI	CATG	2 cut(s)	41, 131
FaiI	YATR	4 cut(s)	39, 129, 175, 260
FalI	AAGNNNNNCTT	1 cut(s)	1030
FaqI	GGGAC	1 cut(s)	774
FatI	CATG	2 cut(s)	37, 127
Fnu4HI	GCNGC	7 cut(s)	725, 957, 978, 1008, 1020, 1023, 1044
FokI	GGATG	4 cut(s)	98, 455, 554, 681
Fsp4HI	GCNGC	7 cut(s)	725, 957, 978, 1008, 1020, 1023, 1044
FspBI	CTAG	5 cut(s)	315, 681, 828, 935, 972
GlaI	GCGC	1 cut(s)	653
GluI	GCNGC	7 cut(s)	725, 957, 978, 1008, 1020, 1023, 1044
HapII	CCGG	2 cut(s)	240, 741
HhaI	GCGC	1 cut(s)	654
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	2 cut(s)	41, 131
Hin6I	GCGC	1 cut(s)	652
HinP1I	GCGC	1 cut(s)	652
HincII	GTYRAC	2 cut(s)	234, 732
HindII	GTYRAC	2 cut(s)	234, 732
HindIII	AAGCTT	1 cut(s)	772
HinfI	GANTC	5 cut(s)	290, 311, 578, 641, 824
HpaII	CCGG	2 cut(s)	240, 741
HphI	GGTGA	4 cut(s)	91, 626, 729, 1025
Hpy166II	GTNNAC	3 cut(s)	17, 234, 732
Hpy188I	TCNGA	7 cut(s)	9, 154, 306, 805, 823, 856, 931
Hpy188III	TCNNGA	5 cut(s)	240, 392, 584, 681, 869
Hpy8I	GTNNAC	3 cut(s)	17, 234, 732
HpyAV	CCTTC	7 cut(s)	301, 359, 452, 539, 682, 687, 698
HpyCH4III	ACNGT	3 cut(s)	454, 665, 910
HpyCH4IV	ACGT	5 cut(s)	54, 236, 505, 592, 807
HpyCH4V	TGCA	4 cut(s)	906, 959, 986, 1043
HpyF10VI	GCNNNNNNNGC	6 cut(s)	953, 962, 977, 983, 1004, 1016
HpyF3I	CTNAG	2 cut(s)	8, 151
HpySE526I	ACGT	5 cut(s)	54, 236, 505, 592, 807
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	2 cut(s)	41, 131
HspAI	GCGC	1 cut(s)	652
Kpn2I	TCCGGA	1 cut(s)	239
Kzo9I	GATC	5 cut(s)	412, 555, 677, 743, 931
Lsp1109I	GCAGC	6 cut(s)	736, 943, 989, 994, 1006, 1009
LweI	GCATC	2 cut(s)	425, 1006
MaeI	CTAG	5 cut(s)	315, 681, 828, 935, 972
MaeII	ACGT	5 cut(s)	54, 236, 505, 592, 807
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	5 cut(s)	414, 557, 679, 745, 933
MboI	GATC	5 cut(s)	412, 555, 677, 743, 931
MboII	GAAGA	5 cut(s)	59, 62, 181, 236, 260
MflI	RGATCY	1 cut(s)	743
MhlI	GDGCHC	1 cut(s)	676
MluCI	AATT	2 cut(s)	608, 799
MlyI	GAGTC	2 cut(s)	299, 635
MmeI	TCCRAC	1 cut(s)	892
MroI	TCCGGA	1 cut(s)	239
MseI	TTAA	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	408
MspA1I	CMGCKG	1 cut(s)	727
MspI	CCGG	2 cut(s)	240, 741
MspR9I	CCNGG	3 cut(s)	467, 741, 899
Mva1269I	GAATGC	1 cut(s)	853
MvaI	CCWGG	2 cut(s)	467, 899
MwoI	GCNNNNNNNGC	6 cut(s)	953, 962, 977, 983, 1004, 1016
NciI	CCSGG	1 cut(s)	741
NdeII	GATC	5 cut(s)	412, 555, 677, 743, 931
NlaIII	CATG	2 cut(s)	41, 131
NlaIV	GGNNCC	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	1 cut(s)	589
PctI	GAATGC	1 cut(s)	853
PfeI	GAWTC	3 cut(s)	311, 578, 824
PflMI	CCANNNNNTGG	1 cut(s)	533
PfoI	TCCNGGA	1 cut(s)	897
PkrI	GCNGC	7 cut(s)	726, 958, 979, 1009, 1021, 1024, 1045
PleI	GAGTC	2 cut(s)	298, 635
PpsI	GAGTC	2 cut(s)	298, 635
Ppu21I	YACGTR	1 cut(s)	593
Psp1406I	AACGTT	1 cut(s)	505
Psp6I	CCWGG	2 cut(s)	465, 897
PspGI	CCWGG	2 cut(s)	465, 897
PspN4I	GGNNCC	1 cut(s)	464
PstI	CTGCAG	1 cut(s)	961
PstNI	CAGNNNCTG	1 cut(s)	965
PsuI	RGATCY	1 cut(s)	743
PvuII	CAGCTG	1 cut(s)	727
RsaI	GTAC	1 cut(s)	790
RsaNI	GTAC	1 cut(s)	789
RseI	CAYNNNNRTG	1 cut(s)	408
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	7 cut(s)	725, 957, 978, 1008, 1020, 1023, 1044
Sau3AI	GATC	5 cut(s)	412, 555, 677, 743, 931
SchI	GAGTC	2 cut(s)	299, 635
ScrFI	CCNGG	3 cut(s)	467, 741, 899
SduI	GDGCHC	1 cut(s)	676
SfaNI	GCATC	2 cut(s)	425, 1006
SfcI	CTRYAG	3 cut(s)	481, 957, 990
SmiMI	CAYNNNNRTG	1 cut(s)	408
SmlI	CTYRAG	1 cut(s)	646
SmoI	CTYRAG	1 cut(s)	646
Sse9I	AATT	2 cut(s)	608, 799
SsiI	CCGC	2 cut(s)	708, 1025
SspMI	CTAG	5 cut(s)	315, 681, 828, 935, 972
StyD4I	CCNGG	3 cut(s)	465, 739, 897
StyI	CCWWGG	1 cut(s)	416
TaaI	ACNGT	3 cut(s)	454, 665, 910
TaiI	ACGT	5 cut(s)	57, 239, 508, 595, 810
TaqI	TCGA	2 cut(s)	108, 952
TaqII	GACCGA	1 cut(s)	94
TasI	AATT	2 cut(s)	608, 799
TatI	WGTACW	1 cut(s)	788
TfiI	GAWTC	3 cut(s)	311, 578, 824
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TscAI	CASTG	3 cut(s)	24, 103, 580
TseI	GCWGC	7 cut(s)	724, 956, 977, 1007, 1019, 1022, 1043
TspDTI	ATGAA	3 cut(s)	378, 558, 639
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	3 cut(s)	24, 103, 580
Van91I	CCANNNNNTGG	1 cut(s)	533
XapI	RAATTY	2 cut(s)	608, 799
XbaI	TCTAGA	1 cut(s)	680
XspI	CTAG	5 cut(s)	315, 681, 828, 935, 972
ZraI	GACGTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.