Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005375.1

Orthogroup ID

OG0001714

Physical Location & Seq

Genomic Coordinates Forward (+)

37504 .. 40641

Gene Structure 3138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005375.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

atgttagaacctcagccagccacccagcccaaccacaagccaaagaacgaggaattagcatctctgagcaaaaaggaggtgaagaaagaagaggctaagctcgagaagctcagtcgcaaccaagagcaagaagcggcacctccgcggctcacgctcgcgcttagtctgccgagccagaggacccactcgccgctaactacggtgacgtgcctctcattcagcattgaaggaccagaaggttctgttgcagttaaggctgataggcagttaaggtattgcagcagtttctttatggatgaaactgctttgcaagacgatatgtgccttcgggtcttcgagaagaacatggtgtttaattgtggtaagaaacggaaggagttcacagttcagtgcatcgtgacggttcagcttgagattgtgagccgtcagatggtgaagtacatggtggcgttgagccctggcaatcgactattgtcattcaagggattatttatgttcctgttatggcaattaaaggccattcacagtagattgaagaaactatggccatctattctttccaatgtgcgctggataattggtgatggtgaaagtgtctcattctggaaggacaattggttaggcattccactgaatacaatgtatgctattgagccggagttggctccatttctccaggatcaagtaagtaaatttatctttgataagcagtgggttttaccacctcttttttcctctactttccctgatgtggctgatcaaattcttggtattgagtttcctatggaggcaatatcagatacggcaatttggtctagtactgcttcagggtcattgaatgcaaaagaggcttatgcttctctggctcctcctggtgcggttgtaaactggggtaaactaatatggcataaagctattcagcccagaaagagtctagttgcatggcaagcttttcaagccttagaaatagttgcagaaccttttgcatcggacgcttctcccggcgctttcttctctgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

340

Amino Acids

38.21

Weight (kDa)

8.18

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26870 AT4G31180 AT4G31180
fragaria_vesca	FvH4_2g15870 FvH4_2g15910 FvH4_2g30550
malus_domestica	MD08G1134400.v1.1 MD12G1153800.v1.1 MD14G1143300.v1.1 MD15G1113400.v1.1
prunus_persica	Prupe.1G463800_v2.0.a1 Prupe.4G141600_v2.0.a1 Prupe.8G055000_v2.0.a1
pyrus_communis	pycom08g11340 pycom15g10170 pycom16g11710
rosa_chinensis	RchiOBHm_Chr5g0032141 RchiOBHm_Chr5g0032161 RchiOBHm_Chr6g0278871 RchiOBHm_Chr6g0312531
rosa_laevigata	RLG00000010321 RLG00000033368
rosa_multiflora	Rmu_co8427103.1_g000001 Rmu_sc0003031.1_g000023 Rmu_sc0005375.1_g000002 Rmu_sc0005375.1_g000011 Rmu_sc0008363.1_g000011 Rmu_sc0043080.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048240 Rroxscaffold_1G00048270 Rroxscaffold_7G00156770
rosa_rugosa	Rorug06G0119800 Rorug06G0120000 Rorug06G0123400 Rorug06G0396100 Rorug06G0396200
rosa_samantha	Rh5DG228900 Rh6AG228300 Rh6AG513500 Rh6BG233900 Rh6BG234000 Rh6BG524200 Rh6BG526500 Rh6CG236300 Rh6CG531400 Rh6DG515600
rosa_wichuraiana	Rw6G020030 Rw6G044650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	136
AccII	CGCG	2 cut(s)	145, 158
AciI	CCGC	5 cut(s)	134, 143, 145, 191, 878
AclWI	GGATC	1 cut(s)	687
AcoI	YGGCCR	1 cut(s)	545
AcsI	RAATTY	2 cut(s)	692, 762
AcuI	CTGAAG	1 cut(s)	810
AfaI	GTAC	2 cut(s)	440, 820
AfiI	CCNNNNNNNGG	2 cut(s)	430, 751
AgsI	TTSAA	5 cut(s)	227, 481, 535, 838, 956
AjiI	CACGTC	1 cut(s)	207
AjnI	CCWGG	3 cut(s)	457, 675, 871
AluBI	AGCT	5 cut(s)	100, 109, 409, 914, 950
AluI	AGCT	5 cut(s)	100, 109, 409, 914, 950
Alw26I	GTCTC	1 cut(s)	601
AlwI	GGATC	1 cut(s)	687
Ama87I	CYCGRG	1 cut(s)	101
AoxI	GGCC	2 cut(s)	516, 545
ApeKI	GCWGC	1 cut(s)	279
ApoI	RAATTY	2 cut(s)	692, 762
Asp700I	GAANNNNTTC	1 cut(s)	377
AspLEI	GCGC	3 cut(s)	160, 570, 1007
AspS9I	GGNCC	2 cut(s)	180, 230
AsuC2I	CCSGG	1 cut(s)	1002
AsuHPI	GGTGA	5 cut(s)	91, 214, 445, 593, 599
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	2 cut(s)	180, 230
BalI	TGGCCA	1 cut(s)	547
BanI	GGYRCC	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	458
BbsI	GAAGAC	1 cut(s)	325
BbvCI	CCTCAGC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	3 cut(s)	424, 556, 578
BceAI	ACGGC	2 cut(s)	408, 819
BciT130I	CCWGG	3 cut(s)	459, 677, 873
BclI	TGATCA	1 cut(s)	757
BcnI	CCSGG	1 cut(s)	1002
BcoDI	GTCTC	1 cut(s)	601
BfaI	CTAG	2 cut(s)	816, 935
BfoI	RGCGCY	1 cut(s)	1008
BisI	GCNGC	4 cut(s)	135, 146, 191, 280
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	4 cut(s)	136, 147, 192, 281
BmcAI	AGTACT	1 cut(s)	820
Bme1390I	CCNGG	4 cut(s)	459, 677, 873, 1002
Bme18I	GGWCC	2 cut(s)	180, 230
BmeT110I	CYCGRG	1 cut(s)	101
BmgBI	CACGTC	1 cut(s)	207
BmgT120I	GGNCC	2 cut(s)	180, 230
BmiI	GGNNCC	4 cut(s)	138, 182, 666, 867
BmrFI	CCNGG	4 cut(s)	459, 677, 873, 1002
BmrI	ACTGGG	1 cut(s)	898
BmsI	GCATC	3 cut(s)	68, 402, 995
BmuI	ACTGGG	1 cut(s)	898
BoxI	GACNNNNGTC	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	659
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	1002
BsaJI	CCNNGG	2 cut(s)	143, 457
Bsc4I	CCNNNNNNNGG	2 cut(s)	430, 751
Bse1I	ACTGG	1 cut(s)	893
BseBI	CCWGG	3 cut(s)	459, 677, 873
BseDI	CCNNGG	2 cut(s)	143, 457
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	2 cut(s)	430, 751
BseMII	CTCAG	3 cut(s)	26, 56, 124
BseNI	ACTGG	1 cut(s)	893
BseRI	GAGGAG	1 cut(s)	858
BseXI	GCAGC	1 cut(s)	291
BseYI	CCCAGC	1 cut(s)	24
Bsh1236I	CGCG	2 cut(s)	145, 158
BshFI	GGCC	2 cut(s)	518, 547
BshNI	GGYRCC	1 cut(s)	136
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	2 cut(s)	656, 1002
BslI	CCNNNNNNNGG	2 cut(s)	430, 751
BsmAI	GTCTC	1 cut(s)	601
BsmI	GAATGC	2 cut(s)	624, 844
BsnI	GGCC	2 cut(s)	518, 547
BsoBI	CYCGRG	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	458
Bsp143I	GATC	2 cut(s)	679, 757
Bsp1720I	GCTNAGC	1 cut(s)	96
BspACI	CCGC	5 cut(s)	134, 143, 145, 191, 878
BspANI	GGCC	2 cut(s)	518, 547
BspCNI	CTCAG	3 cut(s)	25, 57, 123
BspFNI	CGCG	2 cut(s)	145, 158
BspLI	GGNNCC	4 cut(s)	138, 182, 666, 867
BspPI	GGATC	1 cut(s)	687
BspT107I	GGYRCC	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	893
BssECI	CCNNGG	2 cut(s)	143, 457
BssMI	GATC	2 cut(s)	679, 757
Bst2UI	CCWGG	3 cut(s)	459, 677, 873
Bst4CI	ACNGT	4 cut(s)	202, 385, 403, 527
Bst6I	CTCTTC	1 cut(s)	84
BstC8I	GCNNGC	3 cut(s)	18, 156, 948
BstDEI	CTNAG	6 cut(s)	12, 65, 96, 110, 161, 961
BstDSI	CCRYGG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	301
BstFNI	CGCG	2 cut(s)	145, 158
BstH2I	RGCGCY	1 cut(s)	1008
BstHHI	GCGC	3 cut(s)	160, 570, 1007
BstKTI	GATC	2 cut(s)	682, 760
BstMAI	GTCTC	1 cut(s)	601
BstMBI	GATC	2 cut(s)	679, 757
BstMWI	GCNNNNNNNGC	9 cut(s)	106, 151, 166, 254, 848, 863, 947, 956, 992
BstNI	CCWGG	3 cut(s)	459, 677, 873
BstPAI	GACNNNNGTC	1 cut(s)	472
BstSCI	CCNGG	4 cut(s)	457, 675, 871, 1000
BstUI	CGCG	2 cut(s)	145, 158
BstV1I	GCAGC	1 cut(s)	291
BstV2I	GAAGAC	1 cut(s)	325
BsuRI	GGCC	2 cut(s)	518, 547
BtgI	CCRYGG	1 cut(s)	143
BtrI	CACGTC	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	301
BtsI	GCAGTG	1 cut(s)	716
BtsIMutI	CAGTG	3 cut(s)	395, 629, 716
Cac8I	GCNNGC	3 cut(s)	18, 156, 948
CfoI	GCGC	3 cut(s)	160, 570, 1007
Cfr13I	GGNCC	2 cut(s)	180, 230
Cfr42I	CCGCGG	1 cut(s)	146
CseI	GACGC	1 cut(s)	1001
Csp6I	GTAC	2 cut(s)	439, 819
CviAII	CATG	3 cut(s)	346, 442, 942
CviQI	GTAC	2 cut(s)	439, 819
DdeI	CTNAG	6 cut(s)	12, 65, 96, 110, 161, 961
DpnI	GATC	2 cut(s)	681, 759
DpnII	GATC	2 cut(s)	679, 757
EaeI	YGGCCR	1 cut(s)	545
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	458
Eco47I	GGWCC	2 cut(s)	180, 230
Eco57I	CTGAAG	1 cut(s)	810
Eco88I	CYCGRG	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	180
EcoRII	CCWGG	3 cut(s)	457, 675, 871
EcoT38I	GRGCYC	1 cut(s)	458
FaeI	CATG	3 cut(s)	349, 445, 945
FatI	CATG	3 cut(s)	345, 441, 941
FbaI	TGATCA	1 cut(s)	757
Fnu4HI	GCNGC	4 cut(s)	135, 146, 191, 280
FokI	GGATG	1 cut(s)	308
FriOI	GRGCYC	1 cut(s)	458
Fsp4HI	GCNGC	4 cut(s)	135, 146, 191, 280
FspBI	CTAG	2 cut(s)	816, 935
GlaI	GCGC	3 cut(s)	159, 569, 1006
GluI	GCNGC	4 cut(s)	135, 146, 191, 280
GsaI	CCCAGC	1 cut(s)	28
GsuI	CTGGAG	1 cut(s)	659
HaeII	RGCGCY	1 cut(s)	1008
HaeIII	GGCC	2 cut(s)	518, 547
HapII	CCGG	2 cut(s)	656, 1002
HgaI	GACGC	1 cut(s)	1001
HhaI	GCGC	3 cut(s)	160, 570, 1007
Hin1II	CATG	3 cut(s)	349, 445, 945
Hin6I	GCGC	3 cut(s)	158, 568, 1005
HinP1I	GCGC	3 cut(s)	158, 568, 1005
HindIII	AAGCTT	1 cut(s)	948
HinfI	GANTC	1 cut(s)	931
HpaII	CCGG	2 cut(s)	656, 1002
HphI	GGTGA	5 cut(s)	91, 214, 445, 593, 599
Hpy166II	GTNNAC	3 cut(s)	381, 886, 896
Hpy188I	TCNGA	5 cut(s)	66, 429, 799, 991, 1022
Hpy188III	TCNNGA	4 cut(s)	103, 337, 397, 604
Hpy8I	GTNNAC	3 cut(s)	381, 886, 896
HpyAV	CCTTC	5 cut(s)	221, 230, 335, 367, 601
HpyCH4III	ACNGT	4 cut(s)	202, 385, 403, 527
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	8 cut(s)	248, 279, 310, 393, 842, 941, 974, 986
HpyF10VI	GCNNNNNNNGC	9 cut(s)	106, 151, 166, 254, 848, 863, 947, 956, 992
HpyF3I	CTNAG	6 cut(s)	12, 65, 96, 110, 161, 961
HpySE526I	ACGT	1 cut(s)	206
Hsp92II	CATG	3 cut(s)	349, 445, 945
HspAI	GCGC	3 cut(s)	158, 568, 1005
Ksp22I	TGATCA	1 cut(s)	757
KspI	CCGCGG	1 cut(s)	146
Kzo9I	GATC	2 cut(s)	679, 757
LmnI	GCTCC	2 cut(s)	670, 871
Lsp1109I	GCAGC	1 cut(s)	291
LweI	GCATC	3 cut(s)	68, 402, 995
MaeI	CTAG	2 cut(s)	816, 935
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	2 cut(s)	202, 397
MalI	GATC	2 cut(s)	681, 759
MboI	GATC	2 cut(s)	679, 757
MboII	GAAGA	6 cut(s)	94, 101, 325, 352, 547, 1003
MfeI	CAATTG	1 cut(s)	613
MhlI	GDGCHC	1 cut(s)	458
MlsI	TGGCCA	1 cut(s)	547
MluCI	AATT	8 cut(s)	53, 355, 509, 576, 613, 692, 762, 807
MluNI	TGGCCA	1 cut(s)	547
MlyI	GAGTC	1 cut(s)	940
Mox20I	TGGCCA	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	547
MseI	TTAA	4 cut(s)	252, 269, 354, 512
Msp20I	TGGCCA	1 cut(s)	547
MspA1I	CMGCKG	1 cut(s)	145
MspI	CCGG	2 cut(s)	656, 1002
MspR9I	CCNGG	4 cut(s)	459, 677, 873, 1002
MunI	CAATTG	1 cut(s)	613
Mva1269I	GAATGC	2 cut(s)	624, 844
MvaI	CCWGG	3 cut(s)	459, 677, 873
MvnI	CGCG	2 cut(s)	145, 158
MwoI	GCNNNNNNNGC	9 cut(s)	106, 151, 166, 254, 848, 863, 947, 956, 992
NciI	CCSGG	1 cut(s)	1002
NdeII	GATC	2 cut(s)	679, 757
NlaIII	CATG	3 cut(s)	349, 445, 945
NlaIV	GGNNCC	4 cut(s)	138, 182, 666, 867
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	2 cut(s)	202, 397
PaeR7I	CTCGAG	1 cut(s)	101
PctI	GAATGC	2 cut(s)	624, 844
PdmI	GAANNNNTTC	1 cut(s)	377
PfoI	TCCNGGA	1 cut(s)	675
PkrI	GCNGC	4 cut(s)	136, 147, 192, 281
PleI	GAGTC	1 cut(s)	939
PpsI	GAGTC	1 cut(s)	939
PpuMI	RGGWCCY	1 cut(s)	180
PshAI	GACNNNNGTC	1 cut(s)	472
Psp5II	RGGWCCY	1 cut(s)	180
Psp6I	CCWGG	3 cut(s)	457, 675, 871
PspFI	CCCAGC	1 cut(s)	24
PspGI	CCWGG	3 cut(s)	457, 675, 871
PspN4I	GGNNCC	4 cut(s)	138, 182, 666, 867
PspPI	GGNCC	2 cut(s)	180, 230
PspPPI	RGGWCCY	1 cut(s)	180
RsaI	GTAC	2 cut(s)	440, 820
RsaNI	GTAC	2 cut(s)	439, 819
SacII	CCGCGG	1 cut(s)	146
SaqAI	TTAA	4 cut(s)	252, 269, 354, 512
SatI	GCNGC	4 cut(s)	135, 146, 191, 280
Sau3AI	GATC	2 cut(s)	679, 757
Sau96I	GGNCC	2 cut(s)	180, 230
ScaI	AGTACT	1 cut(s)	820
SchI	GAGTC	1 cut(s)	940
ScrFI	CCNGG	4 cut(s)	459, 677, 873, 1002
SduI	GDGCHC	1 cut(s)	458
SfaNI	GCATC	3 cut(s)	68, 402, 995
Sfr274I	CTCGAG	1 cut(s)	101
Sfr303I	CCGCGG	1 cut(s)	146
SgrBI	CCGCGG	1 cut(s)	146
SinI	GGWCC	2 cut(s)	180, 230
SlaI	CTCGAG	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	101, 410
SmoI	CTYRAG	2 cut(s)	101, 410
Sse9I	AATT	8 cut(s)	53, 355, 509, 576, 613, 692, 762, 807
SsiI	CCGC	5 cut(s)	134, 143, 145, 191, 878
SspMI	CTAG	2 cut(s)	816, 935
StyD4I	CCNGG	4 cut(s)	457, 675, 871, 1000
TaaI	ACNGT	4 cut(s)	202, 385, 403, 527
TaiI	ACGT	1 cut(s)	209
TaqI	TCGA	3 cut(s)	102, 336, 466
TasI	AATT	8 cut(s)	53, 355, 509, 576, 613, 692, 762, 807
TatI	WGTACW	2 cut(s)	438, 818
TauI	GCSGC	3 cut(s)	137, 148, 193
Tru1I	TTAA	4 cut(s)	252, 269, 354, 512
Tru9I	TTAA	4 cut(s)	252, 269, 354, 512
TscAI	CASTG	3 cut(s)	395, 636, 716
TseFI	GTSAC	2 cut(s)	202, 397
TseI	GCWGC	1 cut(s)	279
Tsp45I	GTSAC	2 cut(s)	202, 397
TspDTI	ATGAA	1 cut(s)	312
TspGWI	ACGGA	1 cut(s)	385
TspRI	CASTG	3 cut(s)	395, 636, 716
VpaK11BI	GGWCC	2 cut(s)	180, 230
XapI	RAATTY	2 cut(s)	692, 762
XhoI	CTCGAG	1 cut(s)	101
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	2 cut(s)	816, 935
ZrmI	AGTACT	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.