Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001714

Physical Location & Seq

Genomic Coordinates Forward (+)

43975057 .. 43975590

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG233900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTCTCATCCAGAATCTCAGCCAGCCACCGAGCTCAGCCACGAGCCAGAGAACGAGGAGTCAGCCTCTCTTAGCAAAAAGGCAGCAAAGAAAAAAGCGGCCAAGCTCGAGAAGCTCCGTCGCCGCCAGGAGCGAGAAGCAGCCATCGCCGCGGCTAGCGCTGATCAGTACTCTGCCGCGCCGGAGGACCAACTCGCCGGGAACTATGGCGACGTGTCACTCATTCAGCTCCAGTCGATGAAGATGGTCGACGTCAATCTTCGGACGGAGGTCGGAGCTCTAACTGAGGCGTTGAAGGACCAGAAGGTTCGGATACGCGGCCGTGCGCAGACGATTAGACCCACCGAGGAGAAGCTGGCGTTTATTGTGGTCAGAGAGAAGGGGTTCACGGTTCAGTGCGTCGTGACGGTTCAGCCGGAGATAGTGAGCTGTCAGATGGTGAAGTACGCGTCGAAGTTGAGCCGCGAGTCGATTATTGACATTGAAGGGATTGTGTCTAAACCTGATATGGCAATTGCAGGCGCTTCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006422 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045202 GO:0046483 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

177

Amino Acids

19.39

Weight (kDa)

7.73

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26870 AT4G31180 AT4G31180
fragaria_vesca	FvH4_2g15870 FvH4_2g15910 FvH4_2g30550
malus_domestica	MD08G1134400.v1.1 MD12G1153800.v1.1 MD14G1143300.v1.1 MD15G1113400.v1.1
prunus_persica	Prupe.1G463800_v2.0.a1 Prupe.4G141600_v2.0.a1 Prupe.8G055000_v2.0.a1
pyrus_communis	pycom08g11340 pycom15g10170 pycom16g11710
rosa_chinensis	RchiOBHm_Chr5g0032141 RchiOBHm_Chr5g0032161 RchiOBHm_Chr6g0278871 RchiOBHm_Chr6g0312531
rosa_laevigata	RLG00000010321 RLG00000033368
rosa_multiflora	Rmu_co8427103.1_g000001 Rmu_sc0003031.1_g000023 Rmu_sc0005375.1_g000002 Rmu_sc0005375.1_g000011 Rmu_sc0008363.1_g000011 Rmu_sc0043080.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048240 Rroxscaffold_1G00048270 Rroxscaffold_7G00156770
rosa_rugosa	Rorug06G0119800 Rorug06G0120000 Rorug06G0123400 Rorug06G0396100 Rorug06G0396200
rosa_samantha	Rh5DG228900 Rh6AG228300 Rh6AG513500 Rh6BG233900 Rh6BG234000 Rh6BG524200 Rh6BG526500 Rh6CG236300 Rh6CG531400 Rh6DG515600
rosa_wichuraiana	Rw6G020030 Rw6G044650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
Acc16I	TGCGCA	1 cut(s)	327
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	5 cut(s)	152, 179, 318, 449, 465
AciI	CCGC	7 cut(s)	98, 124, 150, 152, 177, 318, 463
AcoI	YGGCCR	2 cut(s)	99, 319
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	2 cut(s)	170, 446
AfeI	AGCGCT	1 cut(s)	160
AflIII	ACRYGT	2 cut(s)	213, 447
AgsI	TTSAA	2 cut(s)	295, 485
AjiI	CACGTC	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	7 cut(s)	34, 106, 115, 229, 278, 355, 429
AluI	AGCT	7 cut(s)	34, 106, 115, 229, 278, 355, 429
Alw21I	GWGCWC	2 cut(s)	36, 280
Alw26I	GTCTC	1 cut(s)	9
Ama87I	CYCGRG	1 cut(s)	107
Aor51HI	AGCGCT	1 cut(s)	160
AoxI	GGCC	2 cut(s)	99, 319
ApeKI	GCWGC	2 cut(s)	83, 140
Asp700I	GAANNNNTTC	1 cut(s)	383
AspLEI	GCGC	4 cut(s)	161, 181, 328, 524
AspS9I	GGNCC	2 cut(s)	187, 298
AsuC2I	CCSGG	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	451
AsuNHI	GCTAGC	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	2 cut(s)	187, 298
BanII	GRGCYC	2 cut(s)	36, 280
BauI	CACGAG	1 cut(s)	41
Bbv12I	GWGCWC	2 cut(s)	36, 280
BbvI	GCAGC	2 cut(s)	95, 152
BccI	CCATC	3 cut(s)	152, 238, 430
BceAI	ACGGC	1 cut(s)	306
BciT130I	CCWGG	1 cut(s)	128
BciVI	GTATCC	1 cut(s)	306
BclI	TGATCA	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	156
BfoI	RGCGCY	2 cut(s)	162, 525
BfuI	GTATCC	1 cut(s)	306
BisI	GCNGC	9 cut(s)	84, 99, 124, 141, 150, 153, 177, 319, 463
BlpI	GCTNAGC	1 cut(s)	35
BlsI	GCNGC	9 cut(s)	85, 100, 125, 142, 151, 154, 178, 320, 464
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	2 cut(s)	128, 199
Bme18I	GGWCC	2 cut(s)	187, 298
BmeT110I	CYCGRG	1 cut(s)	107
BmgBI	CACGTC	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	187, 298
BmrFI	CCNGG	2 cut(s)	128, 199
BmtI	GCTAGC	1 cut(s)	159
BoxI	GACNNNNGTC	1 cut(s)	269
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
BpmI	CTGGAG	1 cut(s)	215
Bpu1102I	GCTNAGC	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	199
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	150, 345
Bse1I	ACTGG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	150, 345
BseGI	GGATG	1 cut(s)	7
BseMII	CTCAG	3 cut(s)	32, 49, 276
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	2 cut(s)	71, 362
BseX3I	CGGCCG	1 cut(s)	319
BseXI	GCAGC	2 cut(s)	95, 152
Bsh1236I	CGCG	5 cut(s)	152, 179, 318, 449, 465
Bsh1285I	CGRYCG	1 cut(s)	322
BshFI	GGCC	2 cut(s)	101, 321
BsiEI	CGRYCG	1 cut(s)	322
BsiHKAI	GWGCWC	2 cut(s)	36, 280
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	3 cut(s)	182, 198, 416
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	2 cut(s)	101, 321
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	36, 280
Bsp143I	GATC	1 cut(s)	163
Bsp1720I	GCTNAGC	1 cut(s)	35
BspACI	CCGC	7 cut(s)	98, 124, 150, 152, 177, 318, 463
BspANI	GGCC	2 cut(s)	101, 321
BspCNI	CTCAG	3 cut(s)	31, 48, 277
BspFNI	CGCG	5 cut(s)	152, 179, 318, 449, 465
BspOI	GCTAGC	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	150, 345
BssMI	GATC	1 cut(s)	163
BssNI	GRCGYC	1 cut(s)	252
BssSI	CACGAG	1 cut(s)	41
Bst2BI	CACGAG	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	3 cut(s)	391, 409, 531
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	4 cut(s)	24, 157, 357, 520
BstDEI	CTNAG	4 cut(s)	18, 35, 71, 285
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	7
BstFNI	CGCG	5 cut(s)	152, 179, 318, 449, 465
BstH2I	RGCGCY	2 cut(s)	162, 525
BstHHI	GCGC	4 cut(s)	161, 181, 328, 524
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	163
BstMCI	CGRYCG	1 cut(s)	322
BstMWI	GCNNNNNNNGC	4 cut(s)	112, 146, 149, 158
BstNI	CCWGG	1 cut(s)	128
BstPAI	GACNNNNGTC	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	126, 197
BstUI	CGCG	5 cut(s)	152, 179, 318, 449, 465
BstV1I	GCAGC	2 cut(s)	95, 152
BstZI	CGGCCG	1 cut(s)	319
BsuI	GTATCC	1 cut(s)	306
BsuRI	GGCC	2 cut(s)	101, 321
BtgI	CCRYGG	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	130
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	401
Cac8I	GCNNGC	4 cut(s)	24, 157, 357, 520
CfoI	GCGC	4 cut(s)	161, 181, 328, 524
Cfr13I	GGNCC	2 cut(s)	187, 298
Cfr42I	CCGCGG	1 cut(s)	153
CseI	GACGC	2 cut(s)	388, 438
Csp6I	GTAC	2 cut(s)	169, 445
CviQI	GTAC	2 cut(s)	169, 445
DdeI	CTNAG	4 cut(s)	18, 35, 71, 285
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
EaeI	YGGCCR	2 cut(s)	99, 319
EagI	CGGCCG	1 cut(s)	319
Ecl136II	GAGCTC	2 cut(s)	34, 278
EclXI	CGGCCG	1 cut(s)	319
Eco24I	GRGCYC	2 cut(s)	36, 280
Eco47I	GGWCC	2 cut(s)	187, 298
Eco47III	AGCGCT	1 cut(s)	160
Eco52I	CGGCCG	1 cut(s)	319
Eco53kI	GAGCTC	2 cut(s)	34, 278
Eco88I	CYCGRG	1 cut(s)	107
EcoICRI	GAGCTC	2 cut(s)	34, 278
EcoRII	CCWGG	1 cut(s)	126
EcoT38I	GRGCYC	2 cut(s)	36, 280
FaiI	YATR	2 cut(s)	207, 509
FbaI	TGATCA	1 cut(s)	163
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	9 cut(s)	84, 99, 124, 141, 150, 153, 177, 319, 463
FriOI	GRGCYC	2 cut(s)	36, 280
Fsp4HI	GCNGC	9 cut(s)	84, 99, 124, 141, 150, 153, 177, 319, 463
FspBI	CTAG	1 cut(s)	156
FspI	TGCGCA	1 cut(s)	327
GlaI	GCGC	4 cut(s)	160, 180, 327, 523
GluI	GCNGC	9 cut(s)	84, 99, 124, 141, 150, 153, 177, 319, 463
GsuI	CTGGAG	1 cut(s)	215
HaeII	RGCGCY	2 cut(s)	162, 525
HaeIII	GGCC	2 cut(s)	101, 321
HapII	CCGG	3 cut(s)	182, 198, 416
HgaI	GACGC	2 cut(s)	388, 438
HhaI	GCGC	4 cut(s)	161, 181, 328, 524
Hin1I	GRCGYC	1 cut(s)	252
Hin6I	GCGC	4 cut(s)	159, 179, 326, 522
HinP1I	GCGC	4 cut(s)	159, 179, 326, 522
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	3 cut(s)	14, 59, 467
HpaII	CCGG	3 cut(s)	182, 198, 416
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	2 cut(s)	250, 387
Hpy188I	TCNGA	5 cut(s)	264, 275, 312, 374, 435
Hpy188III	TCNNGA	3 cut(s)	11, 109, 403
Hpy8I	GTNNAC	2 cut(s)	250, 387
Hpy99I	CGWCG	5 cut(s)	123, 215, 254, 404, 454
HpyAV	CCTTC	4 cut(s)	289, 298, 373, 479
HpyCH4III	ACNGT	3 cut(s)	391, 409, 531
HpyCH4IV	ACGT	2 cut(s)	213, 252
HpyCH4V	TGCA	1 cut(s)	518
HpyF10VI	GCNNNNNNNGC	4 cut(s)	112, 146, 149, 158
HpyF3I	CTNAG	4 cut(s)	18, 35, 71, 285
HpySE526I	ACGT	2 cut(s)	213, 252
Hsp92I	GRCGYC	1 cut(s)	252
HspAI	GCGC	4 cut(s)	159, 179, 326, 522
Ksp22I	TGATCA	1 cut(s)	163
KspI	CCGCGG	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	4 cut(s)	120, 130, 234, 275
Lsp1109I	GCAGC	2 cut(s)	95, 152
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	2 cut(s)	213, 252
MaeIII	GTNAC	2 cut(s)	216, 403
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	2 cut(s)	251, 253
MfeI	CAATTG	1 cut(s)	513
MhlI	GDGCHC	2 cut(s)	36, 280
MluCI	AATT	1 cut(s)	513
MluI	ACGCGT	1 cut(s)	447
MlyI	GAGTC	2 cut(s)	68, 476
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	6 cut(s)	49, 76, 178, 262, 280, 340
MroXI	GAANNNNTTC	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	3 cut(s)	182, 198, 416
MspR9I	CCNGG	2 cut(s)	128, 199
MunI	CAATTG	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	5 cut(s)	152, 179, 318, 449, 465
MwoI	GCNNNNNNNGC	4 cut(s)	112, 146, 149, 158
NciI	CCSGG	1 cut(s)	199
NdeII	GATC	1 cut(s)	163
NheI	GCTAGC	1 cut(s)	155
NmuCI	GTSAC	2 cut(s)	216, 403
NsbI	TGCGCA	1 cut(s)	327
PaeR7I	CTCGAG	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	9 cut(s)	85, 100, 125, 142, 151, 154, 178, 320, 464
PleI	GAGTC	2 cut(s)	67, 475
PpsI	GAGTC	2 cut(s)	67, 475
PshAI	GACNNNNGTC	1 cut(s)	269
Psp124BI	GAGCTC	2 cut(s)	36, 280
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspPI	GGNCC	2 cut(s)	187, 298
RsaI	GTAC	2 cut(s)	170, 446
RsaNI	GTAC	2 cut(s)	169, 445
SacI	GAGCTC	2 cut(s)	36, 280
SacII	CCGCGG	1 cut(s)	153
SalI	GTCGAC	1 cut(s)	248
SatI	GCNGC	9 cut(s)	84, 99, 124, 141, 150, 153, 177, 319, 463
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	2 cut(s)	187, 298
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	2 cut(s)	68, 476
ScrFI	CCNGG	2 cut(s)	128, 199
SduI	GDGCHC	2 cut(s)	36, 280
Sfr274I	CTCGAG	1 cut(s)	107
Sfr303I	CCGCGG	1 cut(s)	153
SgrBI	CCGCGG	1 cut(s)	153
SinI	GGWCC	2 cut(s)	187, 298
SlaI	CTCGAG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	1 cut(s)	513
SsiI	CCGC	7 cut(s)	98, 124, 150, 152, 177, 318, 463
SspMI	CTAG	1 cut(s)	156
SstI	GAGCTC	2 cut(s)	36, 280
StyD4I	CCNGG	2 cut(s)	126, 197
TaaI	ACNGT	3 cut(s)	391, 409, 531
TaiI	ACGT	2 cut(s)	216, 255
TaqI	TCGA	5 cut(s)	108, 236, 249, 452, 470
TasI	AATT	1 cut(s)	513
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	7 cut(s)	101, 126, 152, 155, 179, 321, 465
TfiI	GAWTC	1 cut(s)	14
TscAI	CASTG	1 cut(s)	401
TseFI	GTSAC	2 cut(s)	216, 403
TseI	GCWGC	2 cut(s)	83, 140
Tsp45I	GTSAC	2 cut(s)	216, 403
TspDTI	ATGAA	1 cut(s)	254
TspGWI	ACGGA	2 cut(s)	107, 281
TspRI	CASTG	1 cut(s)	401
VpaK11BI	GGWCC	2 cut(s)	187, 298
XhoI	CTCGAG	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	383
XspI	CTAG	1 cut(s)	156
ZraI	GACGTC	1 cut(s)	253
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.